co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G16400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0009733: response to auxin	7.72E-06
5	GO:0046620: regulation of organ growth	8.33E-06
6	GO:0009734: auxin-activated signaling pathway	2.05E-04
7	GO:0032958: inositol phosphate biosynthetic process	3.07E-04
8	GO:0034757: negative regulation of iron ion transport	3.07E-04
9	GO:0010271: regulation of chlorophyll catabolic process	6.71E-04
10	GO:0080009: mRNA methylation	6.71E-04
11	GO:0010582: floral meristem determinacy	8.40E-04
12	GO:0080117: secondary growth	1.09E-03
13	GO:0071398: cellular response to fatty acid	1.09E-03
14	GO:0045910: negative regulation of DNA recombination	1.09E-03
15	GO:0090506: axillary shoot meristem initiation	1.09E-03
16	GO:0006863: purine nucleobase transport	1.33E-03
17	GO:0040008: regulation of growth	1.42E-03
18	GO:0010371: regulation of gibberellin biosynthetic process	1.56E-03
19	GO:0006020: inositol metabolic process	1.56E-03
20	GO:0009926: auxin polar transport	1.68E-03
21	GO:0009755: hormone-mediated signaling pathway	2.09E-03
22	GO:0071215: cellular response to abscisic acid stimulus	2.12E-03
23	GO:0009686: gibberellin biosynthetic process	2.12E-03
24	GO:0048497: maintenance of floral organ identity	2.67E-03
25	GO:0010438: cellular response to sulfur starvation	2.67E-03
26	GO:0010158: abaxial cell fate specification	2.67E-03
27	GO:0045487: gibberellin catabolic process	2.67E-03
28	GO:0010087: phloem or xylem histogenesis	2.70E-03
29	GO:0009913: epidermal cell differentiation	3.30E-03
30	GO:1902456: regulation of stomatal opening	3.30E-03
31	GO:0048831: regulation of shoot system development	3.30E-03
32	GO:0003006: developmental process involved in reproduction	3.30E-03
33	GO:0010358: leaf shaping	3.30E-03
34	GO:0016554: cytidine to uridine editing	3.30E-03
35	GO:0010583: response to cyclopentenone	3.83E-03
36	GO:0032502: developmental process	3.83E-03
37	GO:0009082: branched-chain amino acid biosynthetic process	3.97E-03
38	GO:0048509: regulation of meristem development	3.97E-03
39	GO:0009099: valine biosynthetic process	3.97E-03
40	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.97E-03
41	GO:0031930: mitochondria-nucleus signaling pathway	3.97E-03
42	GO:0010098: suspensor development	4.68E-03
43	GO:0030497: fatty acid elongation	4.68E-03
44	GO:0010050: vegetative phase change	4.68E-03
45	GO:0006402: mRNA catabolic process	5.44E-03
46	GO:0010439: regulation of glucosinolate biosynthetic process	5.44E-03
47	GO:0009850: auxin metabolic process	5.44E-03
48	GO:0009690: cytokinin metabolic process	5.44E-03
49	GO:0009704: de-etiolation	5.44E-03
50	GO:2000070: regulation of response to water deprivation	5.44E-03
51	GO:0009819: drought recovery	5.44E-03
52	GO:0042255: ribosome assembly	5.44E-03
53	GO:0006353: DNA-templated transcription, termination	5.44E-03
54	GO:0048573: photoperiodism, flowering	6.11E-03
55	GO:0009097: isoleucine biosynthetic process	6.23E-03
56	GO:0000373: Group II intron splicing	7.07E-03
57	GO:0009056: catabolic process	7.07E-03
58	GO:0009051: pentose-phosphate shunt, oxidative branch	7.07E-03
59	GO:0048507: meristem development	7.07E-03
60	GO:0000160: phosphorelay signal transduction system	7.11E-03
61	GO:0009098: leucine biosynthetic process	7.94E-03
62	GO:1900865: chloroplast RNA modification	7.94E-03
63	GO:0009867: jasmonic acid mediated signaling pathway	8.59E-03
64	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.84E-03
65	GO:0009641: shade avoidance	8.84E-03
66	GO:0006298: mismatch repair	8.84E-03
67	GO:0010192: mucilage biosynthetic process	8.84E-03
68	GO:0009682: induced systemic resistance	9.79E-03
69	GO:0006631: fatty acid metabolic process	1.02E-02
70	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.08E-02
71	GO:0005983: starch catabolic process	1.08E-02
72	GO:0042546: cell wall biogenesis	1.16E-02
73	GO:0006006: glucose metabolic process	1.18E-02
74	GO:2000028: regulation of photoperiodism, flowering	1.18E-02
75	GO:0010588: cotyledon vascular tissue pattern formation	1.18E-02
76	GO:0010102: lateral root morphogenesis	1.18E-02
77	GO:0009636: response to toxic substance	1.25E-02
78	GO:0010207: photosystem II assembly	1.28E-02
79	GO:0010223: secondary shoot formation	1.28E-02
80	GO:0009887: animal organ morphogenesis	1.28E-02
81	GO:0006302: double-strand break repair	1.28E-02
82	GO:0048467: gynoecium development	1.28E-02
83	GO:0009658: chloroplast organization	1.35E-02
84	GO:0090351: seedling development	1.39E-02
85	GO:0009736: cytokinin-activated signaling pathway	1.50E-02
86	GO:0009833: plant-type primary cell wall biogenesis	1.50E-02
87	GO:0051017: actin filament bundle assembly	1.62E-02
88	GO:0005992: trehalose biosynthetic process	1.62E-02
89	GO:0009909: regulation of flower development	1.66E-02
90	GO:0071555: cell wall organization	1.71E-02
91	GO:0048367: shoot system development	1.83E-02
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.85E-02
93	GO:0051321: meiotic cell cycle	1.86E-02
94	GO:0016114: terpenoid biosynthetic process	1.86E-02
95	GO:0010431: seed maturation	1.86E-02
96	GO:0010082: regulation of root meristem growth	2.11E-02
97	GO:0001944: vasculature development	2.11E-02
98	GO:0009625: response to insect	2.11E-02
99	GO:0009693: ethylene biosynthetic process	2.11E-02
100	GO:0045892: negative regulation of transcription, DNA-templated	2.27E-02
101	GO:0070417: cellular response to cold	2.37E-02
102	GO:0080022: primary root development	2.50E-02
103	GO:0010118: stomatal movement	2.50E-02
104	GO:0010182: sugar mediated signaling pathway	2.64E-02
105	GO:0009741: response to brassinosteroid	2.64E-02
106	GO:0010268: brassinosteroid homeostasis	2.64E-02
107	GO:0010305: leaf vascular tissue pattern formation	2.64E-02
108	GO:0007018: microtubule-based movement	2.78E-02
109	GO:0048825: cotyledon development	2.92E-02
110	GO:0006351: transcription, DNA-templated	2.92E-02
111	GO:0016132: brassinosteroid biosynthetic process	3.07E-02
112	GO:0071554: cell wall organization or biogenesis	3.07E-02
113	GO:0010090: trichome morphogenesis	3.36E-02
114	GO:0009639: response to red or far red light	3.52E-02
115	GO:0016125: sterol metabolic process	3.52E-02
116	GO:0051607: defense response to virus	3.83E-02
117	GO:0010027: thylakoid membrane organization	3.98E-02
118	GO:0009739: response to gibberellin	4.13E-02
119	GO:0010029: regulation of seed germination	4.15E-02
120	GO:0007166: cell surface receptor signaling pathway	4.22E-02
121	GO:0010411: xyloglucan metabolic process	4.48E-02
122	GO:0030244: cellulose biosynthetic process	4.81E-02
123	GO:0009817: defense response to fungus, incompatible interaction	4.81E-02
124	GO:0009832: plant-type cell wall biogenesis	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0015267: channel activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.07E-04
6	GO:0010012: steroid 22-alpha hydroxylase activity	3.07E-04
7	GO:0000829: inositol heptakisphosphate kinase activity	3.07E-04
8	GO:0005227: calcium activated cation channel activity	3.07E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.07E-04
10	GO:0000828: inositol hexakisphosphate kinase activity	3.07E-04
11	GO:0019156: isoamylase activity	6.71E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.71E-04
13	GO:0010296: prenylcysteine methylesterase activity	6.71E-04
14	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.71E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.71E-04
16	GO:0050736: O-malonyltransferase activity	6.71E-04
17	GO:0009884: cytokinin receptor activity	6.71E-04
18	GO:0005034: osmosensor activity	1.09E-03
19	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.09E-03
20	GO:0052656: L-isoleucine transaminase activity	1.56E-03
21	GO:0052654: L-leucine transaminase activity	1.56E-03
22	GO:0052655: L-valine transaminase activity	1.56E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.56E-03
24	GO:0005345: purine nucleobase transmembrane transporter activity	1.62E-03
25	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.09E-03
26	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.09E-03
27	GO:0004084: branched-chain-amino-acid transaminase activity	2.09E-03
28	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.67E-03
29	GO:0004556: alpha-amylase activity	3.30E-03
30	GO:0030983: mismatched DNA binding	3.30E-03
31	GO:0004709: MAP kinase kinase kinase activity	3.30E-03
32	GO:0019900: kinase binding	3.97E-03
33	GO:0016832: aldehyde-lyase activity	3.97E-03
34	GO:0016759: cellulose synthase activity	4.35E-03
35	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.07E-03
36	GO:0004519: endonuclease activity	8.49E-03
37	GO:0004673: protein histidine kinase activity	8.84E-03
38	GO:0004805: trehalose-phosphatase activity	8.84E-03
39	GO:0000155: phosphorelay sensor kinase activity	1.18E-02
40	GO:0003712: transcription cofactor activity	1.39E-02
41	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.53E-02
42	GO:0008134: transcription factor binding	1.62E-02
43	GO:0031418: L-ascorbic acid binding	1.62E-02
44	GO:0003777: microtubule motor activity	1.66E-02
45	GO:0043424: protein histidine kinase binding	1.74E-02
46	GO:0033612: receptor serine/threonine kinase binding	1.86E-02
47	GO:0003964: RNA-directed DNA polymerase activity	1.86E-02
48	GO:0008408: 3'-5' exonuclease activity	1.86E-02
49	GO:0010333: terpene synthase activity	1.86E-02
50	GO:0016874: ligase activity	2.01E-02
51	GO:0003779: actin binding	2.08E-02
52	GO:0016760: cellulose synthase (UDP-forming) activity	2.11E-02
53	GO:0015035: protein disulfide oxidoreductase activity	2.20E-02
54	GO:0003727: single-stranded RNA binding	2.24E-02
55	GO:0004871: signal transducer activity	2.36E-02
56	GO:0005199: structural constituent of cell wall	2.64E-02
57	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.64E-02
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.75E-02
59	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.05E-02
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.07E-02
61	GO:0009055: electron carrier activity	3.15E-02
62	GO:0004518: nuclease activity	3.21E-02
63	GO:0000156: phosphorelay response regulator activity	3.36E-02
64	GO:0051015: actin filament binding	3.36E-02
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.45E-02
66	GO:0003684: damaged DNA binding	3.52E-02
67	GO:0016413: O-acetyltransferase activity	3.83E-02
68	GO:0008017: microtubule binding	3.86E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.48E-02
70	GO:0016301: kinase activity	4.63E-02
71	GO:0008236: serine-type peptidase activity	4.64E-02
72	GO:0042802: identical protein binding	4.68E-02
73	GO:0015238: drug transmembrane transporter activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0000791: euchromatin	3.07E-04
3	GO:0030870: Mre11 complex	6.71E-04
4	GO:0009569: chloroplast starch grain	6.71E-04
5	GO:0000795: synaptonemal complex	2.67E-03
6	GO:0030095: chloroplast photosystem II	1.28E-02
7	GO:0005875: microtubule associated complex	1.50E-02
8	GO:0009654: photosystem II oxygen evolving complex	1.74E-02
9	GO:0015629: actin cytoskeleton	2.11E-02
10	GO:0005886: plasma membrane	2.33E-02
11	GO:0005871: kinesin complex	2.37E-02
12	GO:0019898: extrinsic component of membrane	2.92E-02
13	GO:0009504: cell plate	2.92E-02
14	GO:0000785: chromatin	3.21E-02
15	GO:0030529: intracellular ribonucleoprotein complex	3.98E-02
16	GO:0000151: ubiquitin ligase complex	4.81E-02
17	GO:0009707: chloroplast outer membrane	4.81E-02