co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G16280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0043392: negative regulation of DNA binding	0.00E+00
8	GO:2000469: negative regulation of peroxidase activity	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0005983: starch catabolic process	1.56E-05
11	GO:0030307: positive regulation of cell growth	1.20E-04
12	GO:0046520: sphingoid biosynthetic process	1.91E-04
13	GO:1905039: carboxylic acid transmembrane transport	1.91E-04
14	GO:1905200: gibberellic acid transmembrane transport	1.91E-04
15	GO:0010480: microsporocyte differentiation	1.91E-04
16	GO:0006659: phosphatidylserine biosynthetic process	1.91E-04
17	GO:0042371: vitamin K biosynthetic process	1.91E-04
18	GO:0015904: tetracycline transport	1.91E-04
19	GO:0005991: trehalose metabolic process	1.91E-04
20	GO:0000023: maltose metabolic process	1.91E-04
21	GO:0000025: maltose catabolic process	1.91E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.91E-04
23	GO:0080112: seed growth	1.91E-04
24	GO:0005980: glycogen catabolic process	1.91E-04
25	GO:0030198: extracellular matrix organization	1.91E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	3.78E-04
27	GO:0006423: cysteinyl-tRNA aminoacylation	4.29E-04
28	GO:0009629: response to gravity	4.29E-04
29	GO:0007154: cell communication	4.29E-04
30	GO:0018026: peptidyl-lysine monomethylation	4.29E-04
31	GO:0071497: cellular response to freezing	4.29E-04
32	GO:0006568: tryptophan metabolic process	4.29E-04
33	GO:0009733: response to auxin	4.82E-04
34	GO:2000012: regulation of auxin polar transport	4.93E-04
35	GO:0006696: ergosterol biosynthetic process	6.99E-04
36	GO:0033591: response to L-ascorbic acid	6.99E-04
37	GO:0006855: drug transmembrane transport	8.71E-04
38	GO:0010306: rhamnogalacturonan II biosynthetic process	9.97E-04
39	GO:0046739: transport of virus in multicellular host	9.97E-04
40	GO:0045338: farnesyl diphosphate metabolic process	9.97E-04
41	GO:0010107: potassium ion import	1.32E-03
42	GO:0006021: inositol biosynthetic process	1.32E-03
43	GO:1901141: regulation of lignin biosynthetic process	1.32E-03
44	GO:0010109: regulation of photosynthesis	1.32E-03
45	GO:0022622: root system development	1.32E-03
46	GO:0006221: pyrimidine nucleotide biosynthetic process	1.32E-03
47	GO:0010197: polar nucleus fusion	1.48E-03
48	GO:0009646: response to absence of light	1.59E-03
49	GO:0098719: sodium ion import across plasma membrane	1.68E-03
50	GO:0010236: plastoquinone biosynthetic process	1.68E-03
51	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.07E-03
52	GO:0000741: karyogamy	2.07E-03
53	GO:0010405: arabinogalactan protein metabolic process	2.07E-03
54	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.07E-03
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.07E-03
56	GO:0009959: negative gravitropism	2.07E-03
57	GO:0010252: auxin homeostasis	2.21E-03
58	GO:0042026: protein refolding	2.49E-03
59	GO:0042372: phylloquinone biosynthetic process	2.49E-03
60	GO:0006458: 'de novo' protein folding	2.49E-03
61	GO:0048280: vesicle fusion with Golgi apparatus	2.49E-03
62	GO:0048509: regulation of meristem development	2.49E-03
63	GO:0030488: tRNA methylation	2.49E-03
64	GO:0009955: adaxial/abaxial pattern specification	2.49E-03
65	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.93E-03
66	GO:0032880: regulation of protein localization	2.93E-03
67	GO:0010161: red light signaling pathway	2.93E-03
68	GO:0006955: immune response	2.93E-03
69	GO:0009772: photosynthetic electron transport in photosystem II	2.93E-03
70	GO:0048437: floral organ development	2.93E-03
71	GO:0046620: regulation of organ growth	3.40E-03
72	GO:0070413: trehalose metabolism in response to stress	3.40E-03
73	GO:0006605: protein targeting	3.40E-03
74	GO:0055075: potassium ion homeostasis	3.40E-03
75	GO:0052543: callose deposition in cell wall	3.40E-03
76	GO:0010497: plasmodesmata-mediated intercellular transport	3.88E-03
77	GO:0009657: plastid organization	3.88E-03
78	GO:0010100: negative regulation of photomorphogenesis	3.88E-03
79	GO:0010099: regulation of photomorphogenesis	3.88E-03
80	GO:0048527: lateral root development	3.95E-03
81	GO:0010206: photosystem II repair	4.40E-03
82	GO:0090333: regulation of stomatal closure	4.40E-03
83	GO:0006783: heme biosynthetic process	4.40E-03
84	GO:0009734: auxin-activated signaling pathway	4.41E-03
85	GO:0051453: regulation of intracellular pH	4.93E-03
86	GO:0009638: phototropism	4.93E-03
87	GO:0043067: regulation of programmed cell death	4.93E-03
88	GO:0006896: Golgi to vacuole transport	5.48E-03
89	GO:0009640: photomorphogenesis	5.57E-03
90	GO:0015770: sucrose transport	6.06E-03
91	GO:0009073: aromatic amino acid family biosynthetic process	6.06E-03
92	GO:0048229: gametophyte development	6.06E-03
93	GO:0010015: root morphogenesis	6.06E-03
94	GO:0009723: response to ethylene	6.76E-03
95	GO:0048366: leaf development	6.91E-03
96	GO:0010102: lateral root morphogenesis	7.28E-03
97	GO:0010628: positive regulation of gene expression	7.28E-03
98	GO:0006006: glucose metabolic process	7.28E-03
99	GO:0010075: regulation of meristem growth	7.28E-03
100	GO:0009767: photosynthetic electron transport chain	7.28E-03
101	GO:0009266: response to temperature stimulus	7.91E-03
102	GO:0009934: regulation of meristem structural organization	7.91E-03
103	GO:0009901: anther dehiscence	8.57E-03
104	GO:0070588: calcium ion transmembrane transport	8.57E-03
105	GO:0010187: negative regulation of seed germination	9.94E-03
106	GO:0005992: trehalose biosynthetic process	9.94E-03
107	GO:0016998: cell wall macromolecule catabolic process	1.14E-02
108	GO:0061077: chaperone-mediated protein folding	1.14E-02
109	GO:0016042: lipid catabolic process	1.17E-02
110	GO:0006730: one-carbon metabolic process	1.21E-02
111	GO:0031348: negative regulation of defense response	1.21E-02
112	GO:0009686: gibberellin biosynthetic process	1.29E-02
113	GO:0008284: positive regulation of cell proliferation	1.45E-02
114	GO:0016117: carotenoid biosynthetic process	1.45E-02
115	GO:0042147: retrograde transport, endosome to Golgi	1.45E-02
116	GO:0048653: anther development	1.53E-02
117	GO:0009958: positive gravitropism	1.62E-02
118	GO:0006885: regulation of pH	1.62E-02
119	GO:0006662: glycerol ether metabolic process	1.62E-02
120	GO:0010182: sugar mediated signaling pathway	1.62E-02
121	GO:0048868: pollen tube development	1.62E-02
122	GO:0009741: response to brassinosteroid	1.62E-02
123	GO:0006814: sodium ion transport	1.70E-02
124	GO:0019252: starch biosynthetic process	1.79E-02
125	GO:0008654: phospholipid biosynthetic process	1.79E-02
126	GO:0006623: protein targeting to vacuole	1.79E-02
127	GO:0009791: post-embryonic development	1.79E-02
128	GO:0007623: circadian rhythm	1.86E-02
129	GO:0006891: intra-Golgi vesicle-mediated transport	1.88E-02
130	GO:0010583: response to cyclopentenone	1.97E-02
131	GO:0010090: trichome morphogenesis	2.06E-02
132	GO:1901657: glycosyl compound metabolic process	2.06E-02
133	GO:0030154: cell differentiation	2.07E-02
134	GO:0009739: response to gibberellin	2.08E-02
135	GO:0016126: sterol biosynthetic process	2.44E-02
136	GO:0010029: regulation of seed germination	2.54E-02
137	GO:0009607: response to biotic stimulus	2.54E-02
138	GO:0015995: chlorophyll biosynthetic process	2.74E-02
139	GO:0006888: ER to Golgi vesicle-mediated transport	2.74E-02
140	GO:0009658: chloroplast organization	2.87E-02
141	GO:0009832: plant-type cell wall biogenesis	3.05E-02
142	GO:0000160: phosphorelay signal transduction system	3.05E-02
143	GO:0009631: cold acclimation	3.27E-02
144	GO:0005975: carbohydrate metabolic process	3.36E-02
145	GO:0080167: response to karrikin	3.56E-02
146	GO:0034599: cellular response to oxidative stress	3.60E-02
147	GO:0009651: response to salt stress	4.08E-02
148	GO:0008283: cell proliferation	4.18E-02
149	GO:0045892: negative regulation of transcription, DNA-templated	4.32E-02
150	GO:0008643: carbohydrate transport	4.41E-02
151	GO:0007275: multicellular organism development	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0010303: limit dextrinase activity	0.00E+00
7	GO:0010313: phytochrome binding	1.91E-04
8	GO:0004134: 4-alpha-glucanotransferase activity	1.91E-04
9	GO:0004645: phosphorylase activity	1.91E-04
10	GO:0005080: protein kinase C binding	1.91E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.91E-04
12	GO:0000170: sphingosine hydroxylase activity	1.91E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	1.91E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.91E-04
15	GO:1905201: gibberellin transmembrane transporter activity	1.91E-04
16	GO:0008184: glycogen phosphorylase activity	1.91E-04
17	GO:0042834: peptidoglycan binding	1.91E-04
18	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.91E-04
19	GO:0015238: drug transmembrane transporter activity	4.10E-04
20	GO:0008493: tetracycline transporter activity	4.29E-04
21	GO:0004512: inositol-3-phosphate synthase activity	4.29E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.29E-04
23	GO:0004817: cysteine-tRNA ligase activity	4.29E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	4.29E-04
25	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.99E-04
26	GO:0009041: uridylate kinase activity	9.97E-04
27	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.97E-04
28	GO:0004659: prenyltransferase activity	1.32E-03
29	GO:0016279: protein-lysine N-methyltransferase activity	1.32E-03
30	GO:0004556: alpha-amylase activity	2.07E-03
31	GO:0015081: sodium ion transmembrane transporter activity	2.07E-03
32	GO:0080030: methyl indole-3-acetate esterase activity	2.07E-03
33	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.07E-03
34	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.49E-03
35	GO:0015297: antiporter activity	3.04E-03
36	GO:0008173: RNA methyltransferase activity	3.88E-03
37	GO:0016788: hydrolase activity, acting on ester bonds	5.75E-03
38	GO:0015386: potassium:proton antiporter activity	6.06E-03
39	GO:0008515: sucrose transmembrane transporter activity	6.06E-03
40	GO:0008559: xenobiotic-transporting ATPase activity	6.06E-03
41	GO:0044183: protein binding involved in protein folding	6.06E-03
42	GO:0005215: transporter activity	6.16E-03
43	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.66E-03
44	GO:0003725: double-stranded RNA binding	7.28E-03
45	GO:0004089: carbonate dehydratase activity	7.28E-03
46	GO:0005262: calcium channel activity	7.28E-03
47	GO:0016298: lipase activity	7.77E-03
48	GO:0008083: growth factor activity	7.91E-03
49	GO:0051119: sugar transmembrane transporter activity	8.57E-03
50	GO:0005528: FK506 binding	9.94E-03
51	GO:0005345: purine nucleobase transmembrane transporter activity	1.07E-02
52	GO:0033612: receptor serine/threonine kinase binding	1.14E-02
53	GO:0003727: single-stranded RNA binding	1.37E-02
54	GO:0008514: organic anion transmembrane transporter activity	1.37E-02
55	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.38E-02
56	GO:0047134: protein-disulfide reductase activity	1.45E-02
57	GO:0004252: serine-type endopeptidase activity	1.49E-02
58	GO:0003713: transcription coactivator activity	1.62E-02
59	GO:0001085: RNA polymerase II transcription factor binding	1.62E-02
60	GO:0004791: thioredoxin-disulfide reductase activity	1.70E-02
61	GO:0000156: phosphorelay response regulator activity	2.06E-02
62	GO:0015385: sodium:proton antiporter activity	2.06E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.06E-02
64	GO:0016791: phosphatase activity	2.15E-02
65	GO:0016759: cellulose synthase activity	2.15E-02
66	GO:0102483: scopolin beta-glucosidase activity	2.74E-02
67	GO:0008236: serine-type peptidase activity	2.84E-02
68	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.27E-02
69	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.27E-02
70	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.49E-02
71	GO:0004497: monooxygenase activity	3.56E-02
72	GO:0008422: beta-glucosidase activity	3.71E-02
73	GO:0000149: SNARE binding	3.71E-02
74	GO:0042393: histone binding	3.83E-02
75	GO:0052689: carboxylic ester hydrolase activity	3.93E-02
76	GO:0016757: transferase activity, transferring glycosyl groups	4.17E-02
77	GO:0005484: SNAP receptor activity	4.18E-02
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.98E-06
2	GO:0009570: chloroplast stroma	1.39E-04
3	GO:0019897: extrinsic component of plasma membrane	6.99E-04
4	GO:0009544: chloroplast ATP synthase complex	1.32E-03
5	GO:0031969: chloroplast membrane	1.45E-03
6	GO:0009534: chloroplast thylakoid	2.09E-03
7	GO:0009543: chloroplast thylakoid lumen	2.14E-03
8	GO:0009535: chloroplast thylakoid membrane	2.19E-03
9	GO:0009295: nucleoid	2.34E-03
10	GO:0012507: ER to Golgi transport vesicle membrane	3.40E-03
11	GO:0009501: amyloplast	3.40E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.40E-03
13	GO:0010494: cytoplasmic stress granule	4.40E-03
14	GO:0031902: late endosome membrane	5.13E-03
15	GO:0031977: thylakoid lumen	5.13E-03
16	GO:0009508: plastid chromosome	7.28E-03
17	GO:0016021: integral component of membrane	8.34E-03
18	GO:0009654: photosystem II oxygen evolving complex	1.07E-02
19	GO:0005770: late endosome	1.62E-02
20	GO:0019898: extrinsic component of membrane	1.79E-02
21	GO:0000932: P-body	2.44E-02
22	GO:0046658: anchored component of plasma membrane	2.46E-02
23	GO:0005667: transcription factor complex	2.64E-02
24	GO:0009579: thylakoid	3.12E-02
25	GO:0000325: plant-type vacuole	3.27E-02
26	GO:0031201: SNARE complex	3.94E-02
27	GO:0031225: anchored component of membrane	4.33E-02