co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G12170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0046486: glycerolipid metabolic process	0.00E+00
7	GO:0019685: photosynthesis, dark reaction	0.00E+00
8	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.70E-04
9	GO:0032958: inositol phosphate biosynthetic process	3.70E-04
10	GO:0043087: regulation of GTPase activity	3.70E-04
11	GO:0043609: regulation of carbon utilization	3.70E-04
12	GO:0051013: microtubule severing	3.70E-04
13	GO:0034757: negative regulation of iron ion transport	3.70E-04
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.74E-04
15	GO:0009926: auxin polar transport	3.75E-04
16	GO:0010583: response to cyclopentenone	6.31E-04
17	GO:0006650: glycerophospholipid metabolic process	8.05E-04
18	GO:0061062: regulation of nematode larval development	8.05E-04
19	GO:0010271: regulation of chlorophyll catabolic process	8.05E-04
20	GO:0001736: establishment of planar polarity	8.05E-04
21	GO:0045037: protein import into chloroplast stroma	1.10E-03
22	GO:0006000: fructose metabolic process	1.30E-03
23	GO:0046168: glycerol-3-phosphate catabolic process	1.30E-03
24	GO:0010226: response to lithium ion	1.30E-03
25	GO:0080117: secondary growth	1.30E-03
26	GO:0016045: detection of bacterium	1.30E-03
27	GO:0042780: tRNA 3'-end processing	1.30E-03
28	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.30E-03
29	GO:0010540: basipetal auxin transport	1.40E-03
30	GO:0009734: auxin-activated signaling pathway	1.52E-03
31	GO:0009825: multidimensional cell growth	1.57E-03
32	GO:0051639: actin filament network formation	1.88E-03
33	GO:0034059: response to anoxia	1.88E-03
34	GO:0007276: gamete generation	1.88E-03
35	GO:0006072: glycerol-3-phosphate metabolic process	1.88E-03
36	GO:0009800: cinnamic acid biosynthetic process	1.88E-03
37	GO:2001141: regulation of RNA biosynthetic process	1.88E-03
38	GO:0045017: glycerolipid biosynthetic process	1.88E-03
39	GO:0006020: inositol metabolic process	1.88E-03
40	GO:0051513: regulation of monopolar cell growth	1.88E-03
41	GO:0051017: actin filament bundle assembly	1.93E-03
42	GO:0009416: response to light stimulus	2.40E-03
43	GO:0051764: actin crosslink formation	2.52E-03
44	GO:0006021: inositol biosynthetic process	2.52E-03
45	GO:0009956: radial pattern formation	2.52E-03
46	GO:0042127: regulation of cell proliferation	3.04E-03
47	GO:0016554: cytidine to uridine editing	3.99E-03
48	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.99E-03
49	GO:0006559: L-phenylalanine catabolic process	3.99E-03
50	GO:0048831: regulation of shoot system development	3.99E-03
51	GO:0003006: developmental process involved in reproduction	3.99E-03
52	GO:0048827: phyllome development	3.99E-03
53	GO:0009733: response to auxin	4.11E-03
54	GO:0009942: longitudinal axis specification	4.81E-03
55	GO:0048509: regulation of meristem development	4.81E-03
56	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.81E-03
57	GO:0048444: floral organ morphogenesis	4.81E-03
58	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.81E-03
59	GO:0009624: response to nematode	5.50E-03
60	GO:1900056: negative regulation of leaf senescence	5.68E-03
61	GO:0000082: G1/S transition of mitotic cell cycle	5.68E-03
62	GO:0010444: guard mother cell differentiation	5.68E-03
63	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.68E-03
64	GO:0006401: RNA catabolic process	5.68E-03
65	GO:0009610: response to symbiotic fungus	5.68E-03
66	GO:0046620: regulation of organ growth	6.61E-03
67	GO:0010492: maintenance of shoot apical meristem identity	6.61E-03
68	GO:0000105: histidine biosynthetic process	6.61E-03
69	GO:0006002: fructose 6-phosphate metabolic process	7.58E-03
70	GO:0071482: cellular response to light stimulus	7.58E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	7.58E-03
72	GO:0032544: plastid translation	7.58E-03
73	GO:0007389: pattern specification process	7.58E-03
74	GO:0009932: cell tip growth	7.58E-03
75	GO:0048507: meristem development	8.60E-03
76	GO:0046916: cellular transition metal ion homeostasis	8.60E-03
77	GO:0048589: developmental growth	8.60E-03
78	GO:0009056: catabolic process	8.60E-03
79	GO:0009832: plant-type cell wall biogenesis	9.44E-03
80	GO:0000160: phosphorelay signal transduction system	9.44E-03
81	GO:1900865: chloroplast RNA modification	9.67E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	1.08E-02
83	GO:0006535: cysteine biosynthetic process from serine	1.08E-02
84	GO:0048829: root cap development	1.08E-02
85	GO:0009641: shade avoidance	1.08E-02
86	GO:0010192: mucilage biosynthetic process	1.08E-02
87	GO:0008285: negative regulation of cell proliferation	1.19E-02
88	GO:0009089: lysine biosynthetic process via diaminopimelate	1.19E-02
89	GO:0006352: DNA-templated transcription, initiation	1.19E-02
90	GO:0009750: response to fructose	1.19E-02
91	GO:0016485: protein processing	1.19E-02
92	GO:0048765: root hair cell differentiation	1.19E-02
93	GO:0030001: metal ion transport	1.30E-02
94	GO:0006790: sulfur compound metabolic process	1.32E-02
95	GO:0005983: starch catabolic process	1.32E-02
96	GO:0010582: floral meristem determinacy	1.32E-02
97	GO:0010152: pollen maturation	1.32E-02
98	GO:0010229: inflorescence development	1.44E-02
99	GO:0009718: anthocyanin-containing compound biosynthetic process	1.44E-02
100	GO:0009744: response to sucrose	1.47E-02
101	GO:0048467: gynoecium development	1.57E-02
102	GO:0009933: meristem structural organization	1.57E-02
103	GO:0009887: animal organ morphogenesis	1.57E-02
104	GO:0009934: regulation of meristem structural organization	1.57E-02
105	GO:0080188: RNA-directed DNA methylation	1.70E-02
106	GO:0046854: phosphatidylinositol phosphorylation	1.70E-02
107	GO:0010053: root epidermal cell differentiation	1.70E-02
108	GO:0009833: plant-type primary cell wall biogenesis	1.84E-02
109	GO:0080147: root hair cell development	1.98E-02
110	GO:0019344: cysteine biosynthetic process	1.98E-02
111	GO:0006364: rRNA processing	1.99E-02
112	GO:0009736: cytokinin-activated signaling pathway	1.99E-02
113	GO:0006874: cellular calcium ion homeostasis	2.12E-02
114	GO:0043622: cortical microtubule organization	2.12E-02
115	GO:0051302: regulation of cell division	2.12E-02
116	GO:0006306: DNA methylation	2.27E-02
117	GO:0003333: amino acid transmembrane transport	2.27E-02
118	GO:0016226: iron-sulfur cluster assembly	2.42E-02
119	GO:0071215: cellular response to abscisic acid stimulus	2.58E-02
120	GO:0048443: stamen development	2.73E-02
121	GO:0006284: base-excision repair	2.73E-02
122	GO:0010091: trichome branching	2.73E-02
123	GO:0071555: cell wall organization	2.77E-02
124	GO:0070417: cellular response to cold	2.90E-02
125	GO:0051726: regulation of cell cycle	3.01E-02
126	GO:0048653: anther development	3.06E-02
127	GO:0000226: microtubule cytoskeleton organization	3.06E-02
128	GO:0000271: polysaccharide biosynthetic process	3.06E-02
129	GO:0010087: phloem or xylem histogenesis	3.06E-02
130	GO:0045489: pectin biosynthetic process	3.23E-02
131	GO:0010305: leaf vascular tissue pattern formation	3.23E-02
132	GO:0009958: positive gravitropism	3.23E-02
133	GO:0048868: pollen tube development	3.23E-02
134	GO:0009741: response to brassinosteroid	3.23E-02
135	GO:0007018: microtubule-based movement	3.40E-02
136	GO:0048825: cotyledon development	3.57E-02
137	GO:0009749: response to glucose	3.57E-02
138	GO:0008654: phospholipid biosynthetic process	3.57E-02
139	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.75E-02
140	GO:0031047: gene silencing by RNA	3.93E-02
141	GO:0032502: developmental process	3.93E-02
142	GO:0016042: lipid catabolic process	3.95E-02
143	GO:0019760: glucosinolate metabolic process	4.30E-02
144	GO:0010252: auxin homeostasis	4.30E-02
145	GO:0048364: root development	4.31E-02
146	GO:0009793: embryo development ending in seed dormancy	4.65E-02
147	GO:0040008: regulation of growth	4.66E-02
148	GO:0009911: positive regulation of flower development	4.87E-02
149	GO:0045490: pectin catabolic process	4.88E-02
150	GO:0009451: RNA modification	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0010011: auxin binding	8.40E-05
7	GO:0005096: GTPase activator activity	1.80E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.70E-04
9	GO:0008836: diaminopimelate decarboxylase activity	3.70E-04
10	GO:0000828: inositol hexakisphosphate kinase activity	3.70E-04
11	GO:0008568: microtubule-severing ATPase activity	3.70E-04
12	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.70E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.70E-04
14	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.70E-04
15	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.70E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	3.70E-04
17	GO:0052832: inositol monophosphate 3-phosphatase activity	8.05E-04
18	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.05E-04
19	GO:0004109: coproporphyrinogen oxidase activity	8.05E-04
20	GO:0008805: carbon-monoxide oxygenase activity	8.05E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	8.05E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	8.05E-04
23	GO:0009884: cytokinin receptor activity	8.05E-04
24	GO:0019156: isoamylase activity	8.05E-04
25	GO:0050017: L-3-cyanoalanine synthase activity	8.05E-04
26	GO:0005094: Rho GDP-dissociation inhibitor activity	8.05E-04
27	GO:0010296: prenylcysteine methylesterase activity	8.05E-04
28	GO:0004047: aminomethyltransferase activity	8.05E-04
29	GO:0045548: phenylalanine ammonia-lyase activity	1.30E-03
30	GO:0003913: DNA photolyase activity	1.30E-03
31	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.30E-03
32	GO:0005034: osmosensor activity	1.30E-03
33	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.30E-03
34	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.88E-03
35	GO:0001872: (1->3)-beta-D-glucan binding	1.88E-03
36	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.52E-03
37	GO:0016987: sigma factor activity	2.52E-03
38	GO:0010328: auxin influx transmembrane transporter activity	2.52E-03
39	GO:0004930: G-protein coupled receptor activity	2.52E-03
40	GO:0001053: plastid sigma factor activity	2.52E-03
41	GO:0030570: pectate lyase activity	2.80E-03
42	GO:0005471: ATP:ADP antiporter activity	3.23E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	3.23E-03
44	GO:0004556: alpha-amylase activity	3.99E-03
45	GO:2001070: starch binding	3.99E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.81E-03
47	GO:0019900: kinase binding	4.81E-03
48	GO:0004124: cysteine synthase activity	4.81E-03
49	GO:0051015: actin filament binding	5.40E-03
50	GO:0009881: photoreceptor activity	5.68E-03
51	GO:0052689: carboxylic ester hydrolase activity	7.39E-03
52	GO:0046914: transition metal ion binding	7.58E-03
53	GO:0004871: signal transducer activity	8.96E-03
54	GO:0009672: auxin:proton symporter activity	9.67E-03
55	GO:0004673: protein histidine kinase activity	1.08E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.34E-02
57	GO:0000175: 3'-5'-exoribonuclease activity	1.44E-02
58	GO:0010329: auxin efflux transmembrane transporter activity	1.44E-02
59	GO:0000155: phosphorelay sensor kinase activity	1.44E-02
60	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.57E-02
61	GO:0005217: intracellular ligand-gated ion channel activity	1.70E-02
62	GO:0003712: transcription cofactor activity	1.70E-02
63	GO:0004970: ionotropic glutamate receptor activity	1.70E-02
64	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.84E-02
65	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.84E-02
66	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.84E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	1.97E-02
68	GO:0004672: protein kinase activity	2.01E-02
69	GO:0043424: protein histidine kinase binding	2.12E-02
70	GO:0004540: ribonuclease activity	2.27E-02
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.42E-02
72	GO:0016760: cellulose synthase (UDP-forming) activity	2.58E-02
73	GO:0003779: actin binding	2.75E-02
74	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.23E-02
75	GO:0042803: protein homodimerization activity	3.35E-02
76	GO:0010181: FMN binding	3.40E-02
77	GO:0019843: rRNA binding	3.55E-02
78	GO:0019901: protein kinase binding	3.57E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.75E-02
80	GO:0016829: lyase activity	3.84E-02
81	GO:0000156: phosphorelay response regulator activity	4.11E-02
82	GO:0004674: protein serine/threonine kinase activity	4.11E-02
83	GO:0008565: protein transporter activity	4.24E-02
84	GO:0016791: phosphatase activity	4.30E-02
85	GO:0016759: cellulose synthase activity	4.30E-02
86	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.40E-02
87	GO:0008237: metallopeptidase activity	4.49E-02
88	GO:0004519: endonuclease activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0045254: pyruvate dehydrogenase complex	8.05E-04
3	GO:0009569: chloroplast starch grain	8.05E-04
4	GO:0032432: actin filament bundle	1.88E-03
5	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.88E-03
6	GO:0000178: exosome (RNase complex)	3.23E-03
7	GO:0046658: anchored component of plasma membrane	3.60E-03
8	GO:0009507: chloroplast	3.93E-03
9	GO:0005886: plasma membrane	4.00E-03
10	GO:0009986: cell surface	5.68E-03
11	GO:0005884: actin filament	1.19E-02
12	GO:0016602: CCAAT-binding factor complex	1.44E-02
13	GO:0009574: preprophase band	1.44E-02
14	GO:0005578: proteinaceous extracellular matrix	1.44E-02
15	GO:0031225: anchored component of membrane	1.78E-02
16	GO:0000419: DNA-directed RNA polymerase V complex	1.84E-02
17	GO:0015629: actin cytoskeleton	2.58E-02
18	GO:0009706: chloroplast inner membrane	2.84E-02
19	GO:0005871: kinesin complex	2.90E-02
20	GO:0005770: late endosome	3.23E-02
21	GO:0005623: cell	3.64E-02
22	GO:0009536: plastid	3.88E-02
23	GO:0005759: mitochondrial matrix	4.45E-02
24	GO:0000932: P-body	4.87E-02