co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G05840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
2	GO:0006488: dolichol-linked oligosaccharide biosynthetic process	0.00E+00
3	GO:0036258: multivesicular body assembly	0.00E+00
4	GO:0002191: cap-dependent translational initiation	0.00E+00
5	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
6	GO:0006511: ubiquitin-dependent protein catabolic process	5.53E-15
7	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-05
8	GO:0043248: proteasome assembly	1.95E-05
9	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.95E-05
10	GO:0030163: protein catabolic process	4.39E-05
11	GO:0046686: response to cadmium ion	8.37E-05
12	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.16E-04
13	GO:0010372: positive regulation of gibberellin biosynthetic process	2.16E-04
14	GO:0051788: response to misfolded protein	2.16E-04
15	GO:0006487: protein N-linked glycosylation	2.85E-04
16	GO:0090630: activation of GTPase activity	3.61E-04
17	GO:0010498: proteasomal protein catabolic process	3.61E-04
18	GO:0055074: calcium ion homeostasis	3.61E-04
19	GO:0010359: regulation of anion channel activity	3.61E-04
20	GO:0030433: ubiquitin-dependent ERAD pathway	3.80E-04
21	GO:0042147: retrograde transport, endosome to Golgi	4.87E-04
22	GO:0002679: respiratory burst involved in defense response	5.20E-04
23	GO:0009647: skotomorphogenesis	5.20E-04
24	GO:0010255: glucose mediated signaling pathway	5.20E-04
25	GO:0071786: endoplasmic reticulum tubular network organization	5.20E-04
26	GO:0070676: intralumenal vesicle formation	5.20E-04
27	GO:0009651: response to salt stress	5.53E-04
28	GO:0010363: regulation of plant-type hypersensitive response	6.90E-04
29	GO:0006221: pyrimidine nucleotide biosynthetic process	6.90E-04
30	GO:0006413: translational initiation	8.31E-04
31	GO:0018279: protein N-linked glycosylation via asparagine	8.73E-04
32	GO:0006564: L-serine biosynthetic process	8.73E-04
33	GO:0005513: detection of calcium ion	8.73E-04
34	GO:0016579: protein deubiquitination	9.33E-04
35	GO:0001731: formation of translation preinitiation complex	1.07E-03
36	GO:0050665: hydrogen peroxide biosynthetic process	1.07E-03
37	GO:0006888: ER to Golgi vesicle-mediated transport	1.15E-03
38	GO:0009612: response to mechanical stimulus	1.27E-03
39	GO:0048280: vesicle fusion with Golgi apparatus	1.27E-03
40	GO:0010189: vitamin E biosynthetic process	1.27E-03
41	GO:0009854: oxidative photosynthetic carbon pathway	1.27E-03
42	GO:0048528: post-embryonic root development	1.49E-03
43	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.49E-03
44	GO:0031540: regulation of anthocyanin biosynthetic process	1.72E-03
45	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.72E-03
46	GO:0048766: root hair initiation	1.72E-03
47	GO:0006402: mRNA catabolic process	1.72E-03
48	GO:0050821: protein stabilization	1.72E-03
49	GO:0009932: cell tip growth	1.96E-03
50	GO:0046685: response to arsenic-containing substance	2.21E-03
51	GO:0045454: cell redox homeostasis	2.56E-03
52	GO:0006896: Golgi to vacuole transport	2.75E-03
53	GO:0048765: root hair cell differentiation	3.03E-03
54	GO:0046856: phosphatidylinositol dephosphorylation	3.03E-03
55	GO:0006820: anion transport	3.32E-03
56	GO:0009553: embryo sac development	3.78E-03
57	GO:0034605: cellular response to heat	3.93E-03
58	GO:0006446: regulation of translational initiation	3.93E-03
59	GO:0010053: root epidermal cell differentiation	4.26E-03
60	GO:0007031: peroxisome organization	4.26E-03
61	GO:0000162: tryptophan biosynthetic process	4.58E-03
62	GO:0034976: response to endoplasmic reticulum stress	4.58E-03
63	GO:0010187: negative regulation of seed germination	4.92E-03
64	GO:0006406: mRNA export from nucleus	4.92E-03
65	GO:0010431: seed maturation	5.62E-03
66	GO:0080092: regulation of pollen tube growth	5.98E-03
67	GO:0010227: floral organ abscission	6.35E-03
68	GO:0009411: response to UV	6.35E-03
69	GO:0040007: growth	6.35E-03
70	GO:0009561: megagametogenesis	6.73E-03
71	GO:0009306: protein secretion	6.73E-03
72	GO:0009555: pollen development	6.89E-03
73	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.49E-03
74	GO:0034220: ion transmembrane transport	7.51E-03
75	GO:0048868: pollen tube development	7.91E-03
76	GO:0010154: fruit development	7.91E-03
77	GO:0009617: response to bacterium	8.00E-03
78	GO:0055072: iron ion homeostasis	8.74E-03
79	GO:0006623: protein targeting to vacuole	8.74E-03
80	GO:0010183: pollen tube guidance	8.74E-03
81	GO:0048825: cotyledon development	8.74E-03
82	GO:0006891: intra-Golgi vesicle-mediated transport	9.16E-03
83	GO:0009630: gravitropism	9.60E-03
84	GO:0031047: gene silencing by RNA	9.60E-03
85	GO:0009567: double fertilization forming a zygote and endosperm	1.05E-02
86	GO:0048366: leaf development	1.22E-02
87	GO:0009816: defense response to bacterium, incompatible interaction	1.23E-02
88	GO:0006950: response to stress	1.33E-02
89	GO:0046777: protein autophosphorylation	1.38E-02
90	GO:0009793: embryo development ending in seed dormancy	1.38E-02
91	GO:0009817: defense response to fungus, incompatible interaction	1.43E-02
92	GO:0006811: ion transport	1.54E-02
93	GO:0006499: N-terminal protein myristoylation	1.54E-02
94	GO:0010043: response to zinc ion	1.59E-02
95	GO:0010119: regulation of stomatal movement	1.59E-02
96	GO:0000724: double-strand break repair via homologous recombination	1.64E-02
97	GO:0042742: defense response to bacterium	1.69E-02
98	GO:0009867: jasmonic acid mediated signaling pathway	1.69E-02
99	GO:0045087: innate immune response	1.69E-02
100	GO:0009408: response to heat	1.91E-02
101	GO:0000209: protein polyubiquitination	2.09E-02
102	GO:0015031: protein transport	2.28E-02
103	GO:0009664: plant-type cell wall organization	2.38E-02
104	GO:0009846: pollen germination	2.38E-02
105	GO:0009736: cytokinin-activated signaling pathway	2.51E-02
106	GO:0009626: plant-type hypersensitive response	2.96E-02
107	GO:0009735: response to cytokinin	3.09E-02
108	GO:0018105: peptidyl-serine phosphorylation	3.29E-02
109	GO:0006457: protein folding	4.36E-02
110	GO:0040008: regulation of growth	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0004583: dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity	0.00E+00
3	GO:0004298: threonine-type endopeptidase activity	6.56E-14
4	GO:0008233: peptidase activity	8.32E-08
5	GO:0036402: proteasome-activating ATPase activity	1.95E-05
6	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	9.14E-05
7	GO:0051879: Hsp90 protein binding	2.16E-04
8	GO:0004617: phosphoglycerate dehydrogenase activity	2.16E-04
9	GO:0004127: cytidylate kinase activity	2.16E-04
10	GO:0004640: phosphoribosylanthranilate isomerase activity	2.16E-04
11	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.16E-04
12	GO:0017025: TBP-class protein binding	2.28E-04
13	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.47E-04
14	GO:0004848: ureidoglycolate hydrolase activity	3.61E-04
15	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	5.20E-04
16	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	5.20E-04
17	GO:0009041: uridylate kinase activity	5.20E-04
18	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	5.20E-04
19	GO:0046527: glucosyltransferase activity	6.90E-04
20	GO:0008891: glycolate oxidase activity	6.90E-04
21	GO:0004518: nuclease activity	7.39E-04
22	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	8.73E-04
23	GO:0016887: ATPase activity	1.09E-03
24	GO:0003743: translation initiation factor activity	1.10E-03
25	GO:0051920: peroxiredoxin activity	1.27E-03
26	GO:0004656: procollagen-proline 4-dioxygenase activity	1.27E-03
27	GO:0005524: ATP binding	1.46E-03
28	GO:0015288: porin activity	1.72E-03
29	GO:0016209: antioxidant activity	1.72E-03
30	GO:0008308: voltage-gated anion channel activity	1.96E-03
31	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.75E-03
32	GO:0008327: methyl-CpG binding	3.03E-03
33	GO:0031625: ubiquitin protein ligase binding	3.04E-03
34	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.63E-03
35	GO:0004175: endopeptidase activity	3.93E-03
36	GO:0004190: aspartic-type endopeptidase activity	4.26E-03
37	GO:0031418: L-ascorbic acid binding	4.92E-03
38	GO:0043130: ubiquitin binding	4.92E-03
39	GO:0043424: protein histidine kinase binding	5.27E-03
40	GO:0003756: protein disulfide isomerase activity	6.73E-03
41	GO:0047134: protein-disulfide reductase activity	7.11E-03
42	GO:0004791: thioredoxin-disulfide reductase activity	8.32E-03
43	GO:0016853: isomerase activity	8.32E-03
44	GO:0010181: FMN binding	8.32E-03
45	GO:0004872: receptor activity	8.74E-03
46	GO:0004843: thiol-dependent ubiquitin-specific protease activity	9.16E-03
47	GO:0004197: cysteine-type endopeptidase activity	9.60E-03
48	GO:0016597: amino acid binding	1.14E-02
49	GO:0005516: calmodulin binding	1.16E-02
50	GO:0015250: water channel activity	1.19E-02
51	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.28E-02
52	GO:0004683: calmodulin-dependent protein kinase activity	1.33E-02
53	GO:0061630: ubiquitin protein ligase activity	1.36E-02
54	GO:0005096: GTPase activator activity	1.48E-02
55	GO:0005509: calcium ion binding	1.52E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.69E-02
57	GO:0000149: SNARE binding	1.80E-02
58	GO:0005484: SNAP receptor activity	2.03E-02
59	GO:0035091: phosphatidylinositol binding	2.14E-02
60	GO:0051287: NAD binding	2.32E-02
61	GO:0051082: unfolded protein binding	3.22E-02
62	GO:0008026: ATP-dependent helicase activity	3.36E-02
63	GO:0008565: protein transporter activity	4.30E-02
64	GO:0016787: hydrolase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0000502: proteasome complex	1.04E-21
3	GO:0005839: proteasome core complex	6.56E-14
4	GO:0005829: cytosol	2.31E-08
5	GO:0005774: vacuolar membrane	4.08E-07
6	GO:0019773: proteasome core complex, alpha-subunit complex	6.22E-07
7	GO:0005789: endoplasmic reticulum membrane	1.06E-05
8	GO:0031597: cytosolic proteasome complex	2.78E-05
9	GO:0031595: nuclear proteasome complex	3.77E-05
10	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.94E-05
11	GO:0005783: endoplasmic reticulum	5.85E-05
12	GO:0009510: plasmodesmatal desmotubule	9.14E-05
13	GO:0016442: RISC complex	9.14E-05
14	GO:0008540: proteasome regulatory particle, base subcomplex	9.45E-05
15	GO:0008541: proteasome regulatory particle, lid subcomplex	1.33E-04
16	GO:0048471: perinuclear region of cytoplasm	1.33E-04
17	GO:0031902: late endosome membrane	1.72E-04
18	GO:0005773: vacuole	4.42E-04
19	GO:0071782: endoplasmic reticulum tubular network	5.20E-04
20	GO:0030660: Golgi-associated vesicle membrane	6.90E-04
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.90E-04
22	GO:0000813: ESCRT I complex	8.73E-04
23	GO:0008250: oligosaccharyltransferase complex	8.73E-04
24	GO:0005788: endoplasmic reticulum lumen	1.04E-03
25	GO:0030904: retromer complex	1.07E-03
26	GO:0030140: trans-Golgi network transport vesicle	1.07E-03
27	GO:0016282: eukaryotic 43S preinitiation complex	1.07E-03
28	GO:0033290: eukaryotic 48S preinitiation complex	1.27E-03
29	GO:0012507: ER to Golgi transport vesicle membrane	1.72E-03
30	GO:0046930: pore complex	1.96E-03
31	GO:0010494: cytoplasmic stress granule	2.21E-03
32	GO:0005765: lysosomal membrane	3.03E-03
33	GO:0009536: plastid	5.30E-03
34	GO:0005741: mitochondrial outer membrane	5.62E-03
35	GO:0005634: nucleus	5.83E-03
36	GO:0005770: late endosome	7.91E-03
37	GO:0048046: apoplast	8.21E-03
38	GO:0009504: cell plate	8.74E-03
39	GO:0016020: membrane	9.21E-03
40	GO:0005618: cell wall	9.53E-03
41	GO:0016592: mediator complex	9.60E-03
42	GO:0009506: plasmodesma	1.09E-02
43	GO:0005778: peroxisomal membrane	1.09E-02
44	GO:0000932: P-body	1.19E-02
45	GO:0005802: trans-Golgi network	1.25E-02
46	GO:0019005: SCF ubiquitin ligase complex	1.43E-02
47	GO:0005886: plasma membrane	1.47E-02
48	GO:0000325: plant-type vacuole	1.59E-02
49	GO:0031201: SNARE complex	1.91E-02
50	GO:0031966: mitochondrial membrane	2.38E-02
51	GO:0005635: nuclear envelope	2.63E-02
52	GO:0005747: mitochondrial respiratory chain complex I	2.89E-02
53	GO:0009706: chloroplast inner membrane	3.22E-02
54	GO:0005737: cytoplasm	3.74E-02
55	GO:0005623: cell	3.85E-02
56	GO:0005777: peroxisome	3.88E-02