Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04925

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097275: cellular ammonia homeostasis0.00E+00
2GO:0051924: regulation of calcium ion transport0.00E+00
3GO:0010024: phytochromobilin biosynthetic process5.10E-05
4GO:0006788: heme oxidation9.05E-05
5GO:0006168: adenine salvage1.36E-04
6GO:0006166: purine ribonucleoside salvage1.36E-04
7GO:0044209: AMP salvage2.40E-04
8GO:0000741: karyogamy2.97E-04
9GO:0006855: drug transmembrane transport3.58E-04
10GO:0010078: maintenance of root meristem identity4.84E-04
11GO:0046620: regulation of organ growth4.84E-04
12GO:0043562: cellular response to nitrogen levels5.50E-04
13GO:0009684: indoleacetic acid biosynthetic process8.37E-04
14GO:0010015: root morphogenesis8.37E-04
15GO:0009773: photosynthetic electron transport in photosystem I8.37E-04
16GO:0010588: cotyledon vascular tissue pattern formation9.90E-04
17GO:0048467: gynoecium development1.07E-03
18GO:0080147: root hair cell development1.32E-03
19GO:0019953: sexual reproduction1.41E-03
20GO:0019915: lipid storage1.50E-03
21GO:0031348: negative regulation of defense response1.59E-03
22GO:0006730: one-carbon metabolic process1.59E-03
23GO:0080022: primary root development1.98E-03
24GO:0010087: phloem or xylem histogenesis1.98E-03
25GO:0009958: positive gravitropism2.08E-03
26GO:0010197: polar nucleus fusion2.08E-03
27GO:0048825: cotyledon development2.29E-03
28GO:0009851: auxin biosynthetic process2.29E-03
29GO:0010583: response to cyclopentenone2.50E-03
30GO:1901657: glycosyl compound metabolic process2.61E-03
31GO:0009828: plant-type cell wall loosening2.73E-03
32GO:0010252: auxin homeostasis2.73E-03
33GO:0009607: response to biotic stimulus3.19E-03
34GO:0048527: lateral root development4.06E-03
35GO:0051707: response to other organism5.13E-03
36GO:0009664: plant-type cell wall organization6.00E-03
37GO:0048367: shoot system development7.24E-03
38GO:0042744: hydrogen peroxide catabolic process1.03E-02
39GO:0006413: translational initiation1.12E-02
40GO:0006952: defense response1.19E-02
41GO:0005975: carbohydrate metabolic process1.45E-02
42GO:0009826: unidimensional cell growth1.57E-02
43GO:0009723: response to ethylene1.78E-02
44GO:0015979: photosynthesis2.06E-02
45GO:0006357: regulation of transcription from RNA polymerase II promoter3.02E-02
46GO:0009908: flower development3.47E-02
47GO:0009555: pollen development3.72E-02
RankGO TermAdjusted P value
1GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.10E-05
2GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.10E-05
3GO:0003999: adenine phosphoribosyltransferase activity1.36E-04
4GO:0004392: heme oxygenase (decyclizing) activity1.86E-04
5GO:0015238: drug transmembrane transporter activity1.95E-04
6GO:0016846: carbon-sulfur lyase activity2.40E-04
7GO:0015297: antiporter activity9.34E-04
8GO:0004089: carbonate dehydratase activity9.90E-04
9GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.07E-03
10GO:0102483: scopolin beta-glucosidase activity3.43E-03
11GO:0008422: beta-glucosidase activity4.58E-03
12GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.20E-03
13GO:0004252: serine-type endopeptidase activity1.01E-02
14GO:0005215: transporter activity1.05E-02
15GO:0003743: translation initiation factor activity1.32E-02
16GO:0003674: molecular_function1.49E-02
17GO:0004601: peroxidase activity1.61E-02
18GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.13E-02
19GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.30E-02
RankGO TermAdjusted P value
1GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.19E-04
2GO:0005770: late endosome2.08E-03
3GO:0031902: late endosome membrane4.86E-03
4GO:0010008: endosome membrane7.24E-03
5GO:0005623: cell9.60E-03
6GO:0009705: plant-type vacuole membrane1.18E-02
7GO:0031969: chloroplast membrane1.87E-02
8GO:0009535: chloroplast thylakoid membrane2.14E-02
9GO:0009507: chloroplast2.50E-02
10GO:0016020: membrane2.56E-02
11GO:0016021: integral component of membrane2.64E-02
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Gene type



Gene DE type