co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0036172: thiamine salvage	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0033528: S-methylmethionine cycle	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0070979: protein K11-linked ubiquitination	0.00E+00
11	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
12	GO:0000373: Group II intron splicing	1.54E-06
13	GO:0009793: embryo development ending in seed dormancy	9.62E-05
14	GO:0009451: RNA modification	2.90E-04
15	GO:0009090: homoserine biosynthetic process	5.32E-04
16	GO:0051382: kinetochore assembly	5.32E-04
17	GO:0043489: RNA stabilization	5.32E-04
18	GO:0000012: single strand break repair	5.32E-04
19	GO:0043266: regulation of potassium ion transport	5.32E-04
20	GO:1902025: nitrate import	5.32E-04
21	GO:0019478: D-amino acid catabolic process	5.32E-04
22	GO:0010080: regulation of floral meristem growth	5.32E-04
23	GO:0072387: flavin adenine dinucleotide metabolic process	5.32E-04
24	GO:0043087: regulation of GTPase activity	5.32E-04
25	GO:2000021: regulation of ion homeostasis	5.32E-04
26	GO:0043609: regulation of carbon utilization	5.32E-04
27	GO:0006436: tryptophanyl-tRNA aminoacylation	5.32E-04
28	GO:0090548: response to nitrate starvation	5.32E-04
29	GO:0000066: mitochondrial ornithine transport	5.32E-04
30	GO:0034757: negative regulation of iron ion transport	5.32E-04
31	GO:0051510: regulation of unidimensional cell growth	5.64E-04
32	GO:0016117: carotenoid biosynthetic process	7.21E-04
33	GO:0009657: plastid organization	8.55E-04
34	GO:0048255: mRNA stabilization	1.14E-03
35	GO:1900871: chloroplast mRNA modification	1.14E-03
36	GO:0010617: circadian regulation of calcium ion oscillation	1.14E-03
37	GO:0010271: regulation of chlorophyll catabolic process	1.14E-03
38	GO:0006435: threonyl-tRNA aminoacylation	1.14E-03
39	GO:0099402: plant organ development	1.14E-03
40	GO:0001736: establishment of planar polarity	1.14E-03
41	GO:0031297: replication fork processing	1.14E-03
42	GO:0010343: singlet oxygen-mediated programmed cell death	1.14E-03
43	GO:1901529: positive regulation of anion channel activity	1.14E-03
44	GO:0009086: methionine biosynthetic process	1.20E-03
45	GO:0006415: translational termination	1.62E-03
46	GO:0010582: floral meristem determinacy	1.86E-03
47	GO:0080117: secondary growth	1.88E-03
48	GO:0006000: fructose metabolic process	1.88E-03
49	GO:0010022: meristem determinacy	1.88E-03
50	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.88E-03
51	GO:1901672: positive regulation of systemic acquired resistance	1.88E-03
52	GO:0010623: programmed cell death involved in cell development	1.88E-03
53	GO:0006696: ergosterol biosynthetic process	1.88E-03
54	GO:0030029: actin filament-based process	1.88E-03
55	GO:0045910: negative regulation of DNA recombination	1.88E-03
56	GO:1902448: positive regulation of shade avoidance	1.88E-03
57	GO:0006094: gluconeogenesis	2.11E-03
58	GO:0010207: photosystem II assembly	2.39E-03
59	GO:0090351: seedling development	2.68E-03
60	GO:0009800: cinnamic acid biosynthetic process	2.72E-03
61	GO:0042989: sequestering of actin monomers	2.72E-03
62	GO:1901332: negative regulation of lateral root development	2.72E-03
63	GO:1990019: protein storage vacuole organization	2.72E-03
64	GO:0046836: glycolipid transport	2.72E-03
65	GO:0009067: aspartate family amino acid biosynthetic process	2.72E-03
66	GO:0051513: regulation of monopolar cell growth	2.72E-03
67	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.72E-03
68	GO:0051639: actin filament network formation	2.72E-03
69	GO:0034059: response to anoxia	2.72E-03
70	GO:0010239: chloroplast mRNA processing	2.72E-03
71	GO:0009658: chloroplast organization	2.73E-03
72	GO:0005992: trehalose biosynthetic process	3.31E-03
73	GO:0010508: positive regulation of autophagy	3.66E-03
74	GO:0008295: spermidine biosynthetic process	3.66E-03
75	GO:1902347: response to strigolactone	3.66E-03
76	GO:0051781: positive regulation of cell division	3.66E-03
77	GO:0051764: actin crosslink formation	3.66E-03
78	GO:0048442: sepal development	3.66E-03
79	GO:0051322: anaphase	3.66E-03
80	GO:0015846: polyamine transport	3.66E-03
81	GO:0030041: actin filament polymerization	4.70E-03
82	GO:0010117: photoprotection	4.70E-03
83	GO:0046283: anthocyanin-containing compound metabolic process	4.70E-03
84	GO:0010236: plastoquinone biosynthetic process	4.70E-03
85	GO:0031365: N-terminal protein amino acid modification	4.70E-03
86	GO:0009229: thiamine diphosphate biosynthetic process	4.70E-03
87	GO:0016123: xanthophyll biosynthetic process	4.70E-03
88	GO:0010158: abaxial cell fate specification	4.70E-03
89	GO:0032876: negative regulation of DNA endoreduplication	4.70E-03
90	GO:0080110: sporopollenin biosynthetic process	4.70E-03
91	GO:0060918: auxin transport	5.82E-03
92	GO:0048831: regulation of shoot system development	5.82E-03
93	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.82E-03
94	GO:0010190: cytochrome b6f complex assembly	5.82E-03
95	GO:1901371: regulation of leaf morphogenesis	5.82E-03
96	GO:0006559: L-phenylalanine catabolic process	5.82E-03
97	GO:0009228: thiamine biosynthetic process	5.82E-03
98	GO:0048827: phyllome development	5.82E-03
99	GO:0010087: phloem or xylem histogenesis	6.14E-03
100	GO:0009958: positive gravitropism	6.63E-03
101	GO:0042372: phylloquinone biosynthetic process	7.03E-03
102	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.03E-03
103	GO:0010076: maintenance of floral meristem identity	7.03E-03
104	GO:0048509: regulation of meristem development	7.03E-03
105	GO:0009088: threonine biosynthetic process	7.03E-03
106	GO:0010310: regulation of hydrogen peroxide metabolic process	7.03E-03
107	GO:0007059: chromosome segregation	7.13E-03
108	GO:0010050: vegetative phase change	8.33E-03
109	GO:0010098: suspensor development	8.33E-03
110	GO:0015693: magnesium ion transport	8.33E-03
111	GO:0000712: resolution of meiotic recombination intermediates	8.33E-03
112	GO:0006955: immune response	8.33E-03
113	GO:0007264: small GTPase mediated signal transduction	8.76E-03
114	GO:0048316: seed development	9.09E-03
115	GO:0009850: auxin metabolic process	9.70E-03
116	GO:0042255: ribosome assembly	9.70E-03
117	GO:0006353: DNA-templated transcription, termination	9.70E-03
118	GO:0032875: regulation of DNA endoreduplication	9.70E-03
119	GO:0070413: trehalose metabolism in response to stress	9.70E-03
120	GO:0000105: histidine biosynthetic process	9.70E-03
121	GO:0048564: photosystem I assembly	9.70E-03
122	GO:0009827: plant-type cell wall modification	1.11E-02
123	GO:0032544: plastid translation	1.11E-02
124	GO:0006002: fructose 6-phosphate metabolic process	1.11E-02
125	GO:0007129: synapsis	1.11E-02
126	GO:0071482: cellular response to light stimulus	1.11E-02
127	GO:0022900: electron transport chain	1.11E-02
128	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.27E-02
129	GO:0006098: pentose-phosphate shunt	1.27E-02
130	GO:0010206: photosystem II repair	1.27E-02
131	GO:0010018: far-red light signaling pathway	1.43E-02
132	GO:1900865: chloroplast RNA modification	1.43E-02
133	GO:0016571: histone methylation	1.43E-02
134	GO:0016573: histone acetylation	1.43E-02
135	GO:1900426: positive regulation of defense response to bacterium	1.43E-02
136	GO:0009638: phototropism	1.43E-02
137	GO:0018298: protein-chromophore linkage	1.56E-02
138	GO:0009299: mRNA transcription	1.59E-02
139	GO:0006535: cysteine biosynthetic process from serine	1.59E-02
140	GO:0048441: petal development	1.59E-02
141	GO:0048829: root cap development	1.59E-02
142	GO:0006298: mismatch repair	1.59E-02
143	GO:0006259: DNA metabolic process	1.59E-02
144	GO:0000160: phosphorelay signal transduction system	1.64E-02
145	GO:0006265: DNA topological change	1.76E-02
146	GO:0009089: lysine biosynthetic process via diaminopimelate	1.76E-02
147	GO:0048765: root hair cell differentiation	1.76E-02
148	GO:0045037: protein import into chloroplast stroma	1.94E-02
149	GO:0009785: blue light signaling pathway	2.13E-02
150	GO:0010229: inflorescence development	2.13E-02
151	GO:0010075: regulation of meristem growth	2.13E-02
152	GO:0009725: response to hormone	2.13E-02
153	GO:0009416: response to light stimulus	2.13E-02
154	GO:0006839: mitochondrial transport	2.26E-02
155	GO:0048440: carpel development	2.32E-02
156	GO:0010020: chloroplast fission	2.32E-02
157	GO:0010540: basipetal auxin transport	2.32E-02
158	GO:0009266: response to temperature stimulus	2.32E-02
159	GO:0006302: double-strand break repair	2.32E-02
160	GO:0008283: cell proliferation	2.56E-02
161	GO:0006281: DNA repair	2.61E-02
162	GO:0042753: positive regulation of circadian rhythm	2.72E-02
163	GO:0006863: purine nucleobase transport	2.72E-02
164	GO:0006397: mRNA processing	2.77E-02
165	GO:0009636: response to toxic substance	2.88E-02
166	GO:0030150: protein import into mitochondrial matrix	2.93E-02
167	GO:0006338: chromatin remodeling	2.93E-02
168	GO:0007010: cytoskeleton organization	2.93E-02
169	GO:0051017: actin filament bundle assembly	2.93E-02
170	GO:0006289: nucleotide-excision repair	2.93E-02
171	GO:2000377: regulation of reactive oxygen species metabolic process	2.93E-02
172	GO:0019344: cysteine biosynthetic process	2.93E-02
173	GO:0006418: tRNA aminoacylation for protein translation	3.14E-02
174	GO:0010073: meristem maintenance	3.14E-02
175	GO:0003333: amino acid transmembrane transport	3.36E-02
176	GO:0016998: cell wall macromolecule catabolic process	3.36E-02
177	GO:0015992: proton transport	3.36E-02
178	GO:0006364: rRNA processing	3.45E-02
179	GO:0009736: cytokinin-activated signaling pathway	3.45E-02
180	GO:0016226: iron-sulfur cluster assembly	3.58E-02
181	GO:0035428: hexose transmembrane transport	3.58E-02
182	GO:0006730: one-carbon metabolic process	3.58E-02
183	GO:0071215: cellular response to abscisic acid stimulus	3.81E-02
184	GO:0048443: stamen development	4.05E-02
185	GO:0006284: base-excision repair	4.05E-02
186	GO:0019722: calcium-mediated signaling	4.05E-02
187	GO:0010089: xylem development	4.05E-02
188	GO:0010584: pollen exine formation	4.05E-02
189	GO:0070417: cellular response to cold	4.28E-02
190	GO:0008033: tRNA processing	4.53E-02
191	GO:0034220: ion transmembrane transport	4.53E-02
192	GO:0010118: stomatal movement	4.53E-02
193	GO:0045489: pectin biosynthetic process	4.77E-02
194	GO:0048868: pollen tube development	4.77E-02
195	GO:0046323: glucose import	4.77E-02
196	GO:0010268: brassinosteroid homeostasis	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
9	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
10	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
11	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
12	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
13	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
14	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
15	GO:0005290: L-histidine transmembrane transporter activity	5.32E-04
16	GO:0051996: squalene synthase activity	5.32E-04
17	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	5.32E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.32E-04
19	GO:0004830: tryptophan-tRNA ligase activity	5.32E-04
20	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	5.32E-04
21	GO:0003879: ATP phosphoribosyltransferase activity	5.32E-04
22	GO:0005227: calcium activated cation channel activity	5.32E-04
23	GO:0042834: peptidoglycan binding	5.32E-04
24	GO:0004519: endonuclease activity	7.74E-04
25	GO:0003747: translation release factor activity	1.02E-03
26	GO:0008805: carbon-monoxide oxygenase activity	1.14E-03
27	GO:0004829: threonine-tRNA ligase activity	1.14E-03
28	GO:0000064: L-ornithine transmembrane transporter activity	1.14E-03
29	GO:0004412: homoserine dehydrogenase activity	1.14E-03
30	GO:0050736: O-malonyltransferase activity	1.14E-03
31	GO:0009884: cytokinin receptor activity	1.14E-03
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.14E-03
33	GO:0050017: L-3-cyanoalanine synthase activity	1.14E-03
34	GO:0017118: lipoyltransferase activity	1.14E-03
35	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.14E-03
36	GO:0043425: bHLH transcription factor binding	1.14E-03
37	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	1.14E-03
38	GO:0004047: aminomethyltransferase activity	1.14E-03
39	GO:0004766: spermidine synthase activity	1.14E-03
40	GO:0004805: trehalose-phosphatase activity	1.40E-03
41	GO:0003690: double-stranded DNA binding	1.43E-03
42	GO:0045548: phenylalanine ammonia-lyase activity	1.88E-03
43	GO:0003913: DNA photolyase activity	1.88E-03
44	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.88E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.88E-03
46	GO:0016805: dipeptidase activity	1.88E-03
47	GO:0005034: osmosensor activity	1.88E-03
48	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.88E-03
49	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.72E-03
50	GO:0015181: arginine transmembrane transporter activity	2.72E-03
51	GO:0016149: translation release factor activity, codon specific	2.72E-03
52	GO:0017172: cysteine dioxygenase activity	2.72E-03
53	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.72E-03
54	GO:0009882: blue light photoreceptor activity	2.72E-03
55	GO:0004300: enoyl-CoA hydratase activity	2.72E-03
56	GO:0001872: (1->3)-beta-D-glucan binding	2.72E-03
57	GO:0015189: L-lysine transmembrane transporter activity	2.72E-03
58	GO:0017089: glycolipid transporter activity	2.72E-03
59	GO:0004072: aspartate kinase activity	2.72E-03
60	GO:0019843: rRNA binding	3.30E-03
61	GO:0010328: auxin influx transmembrane transporter activity	3.66E-03
62	GO:0070628: proteasome binding	3.66E-03
63	GO:0042277: peptide binding	3.66E-03
64	GO:0010011: auxin binding	3.66E-03
65	GO:0051861: glycolipid binding	3.66E-03
66	GO:0003785: actin monomer binding	4.70E-03
67	GO:0005471: ATP:ADP antiporter activity	4.70E-03
68	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.70E-03
69	GO:0008725: DNA-3-methyladenine glycosylase activity	4.70E-03
70	GO:2001070: starch binding	5.82E-03
71	GO:0030983: mismatched DNA binding	5.82E-03
72	GO:0004332: fructose-bisphosphate aldolase activity	5.82E-03
73	GO:0031593: polyubiquitin binding	5.82E-03
74	GO:0004656: procollagen-proline 4-dioxygenase activity	7.03E-03
75	GO:0019900: kinase binding	7.03E-03
76	GO:0004124: cysteine synthase activity	7.03E-03
77	GO:0003723: RNA binding	7.66E-03
78	GO:0003924: GTPase activity	7.90E-03
79	GO:0009881: photoreceptor activity	8.33E-03
80	GO:0008235: metalloexopeptidase activity	8.33E-03
81	GO:0004427: inorganic diphosphatase activity	8.33E-03
82	GO:0004518: nuclease activity	8.76E-03
83	GO:0043022: ribosome binding	9.70E-03
84	GO:0003684: damaged DNA binding	9.96E-03
85	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.11E-02
86	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.22E-02
87	GO:0071949: FAD binding	1.27E-02
88	GO:0004673: protein histidine kinase activity	1.59E-02
89	GO:0005096: GTPase activator activity	1.64E-02
90	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.76E-02
91	GO:0004177: aminopeptidase activity	1.76E-02
92	GO:0004161: dimethylallyltranstransferase activity	1.76E-02
93	GO:0008081: phosphoric diester hydrolase activity	2.13E-02
94	GO:0015266: protein channel activity	2.13E-02
95	GO:0015095: magnesium ion transmembrane transporter activity	2.13E-02
96	GO:0000155: phosphorelay sensor kinase activity	2.13E-02
97	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.32E-02
98	GO:0008266: poly(U) RNA binding	2.32E-02
99	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.72E-02
100	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.72E-02
101	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.72E-02
102	GO:0031418: L-ascorbic acid binding	2.93E-02
103	GO:0043130: ubiquitin binding	2.93E-02
104	GO:0042802: identical protein binding	2.99E-02
105	GO:0005345: purine nucleobase transmembrane transporter activity	3.14E-02
106	GO:0051087: chaperone binding	3.14E-02
107	GO:0043424: protein histidine kinase binding	3.14E-02
108	GO:0003727: single-stranded RNA binding	4.05E-02
109	GO:0004812: aminoacyl-tRNA ligase activity	4.28E-02
110	GO:0004527: exonuclease activity	4.77E-02
111	GO:0008536: Ran GTPase binding	4.77E-02
112	GO:0005525: GTP binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009507: chloroplast	2.83E-13
5	GO:0043240: Fanconi anaemia nuclear complex	5.32E-04
6	GO:0071821: FANCM-MHF complex	5.32E-04
7	GO:0009513: etioplast	1.14E-03
8	GO:0016604: nuclear body	1.20E-03
9	GO:0030529: intracellular ribonucleoprotein complex	1.82E-03
10	GO:0009509: chromoplast	1.88E-03
11	GO:0016605: PML body	1.88E-03
12	GO:0009570: chloroplast stroma	2.01E-03
13	GO:0009574: preprophase band	2.11E-03
14	GO:0032432: actin filament bundle	2.72E-03
15	GO:0042651: thylakoid membrane	3.66E-03
16	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.66E-03
17	GO:0042807: central vacuole	8.33E-03
18	GO:0009986: cell surface	8.33E-03
19	GO:0031305: integral component of mitochondrial inner membrane	9.70E-03
20	GO:0009501: amyloplast	9.70E-03
21	GO:0009535: chloroplast thylakoid membrane	1.06E-02
22	GO:0000326: protein storage vacuole	1.11E-02
23	GO:0005680: anaphase-promoting complex	1.27E-02
24	GO:0031969: chloroplast membrane	1.46E-02
25	GO:0009536: plastid	1.61E-02
26	GO:0005884: actin filament	1.76E-02
27	GO:0000311: plastid large ribosomal subunit	1.94E-02
28	GO:0005759: mitochondrial matrix	1.97E-02
29	GO:0005938: cell cortex	2.13E-02
30	GO:0005578: proteinaceous extracellular matrix	2.13E-02
31	GO:0030176: integral component of endoplasmic reticulum membrane	2.52E-02
32	GO:0009579: thylakoid	2.87E-02
33	GO:0046658: anchored component of plasma membrane	3.15E-02
34	GO:0009532: plastid stroma	3.36E-02
35	GO:0015629: actin cytoskeleton	3.81E-02
36	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.05E-02
37	GO:0031225: anchored component of membrane	4.45E-02
38	GO:0005770: late endosome	4.77E-02