Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071985: multivesicular body sorting pathway0.00E+00
2GO:0010055: atrichoblast differentiation0.00E+00
3GO:0006654: phosphatidic acid biosynthetic process0.00E+00
4GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
5GO:1902001: fatty acid transmembrane transport0.00E+00
6GO:1902289: negative regulation of defense response to oomycetes0.00E+00
7GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
8GO:0005993: trehalose catabolic process0.00E+00
9GO:0009312: oligosaccharide biosynthetic process0.00E+00
10GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
11GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
12GO:0052386: cell wall thickening0.00E+00
13GO:1902009: positive regulation of toxin transport0.00E+00
14GO:0046865: terpenoid transport0.00E+00
15GO:0018063: cytochrome c-heme linkage0.00E+00
16GO:0051553: flavone biosynthetic process0.00E+00
17GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.32E-05
18GO:0006605: protein targeting3.32E-05
19GO:0042742: defense response to bacterium3.81E-05
20GO:0010112: regulation of systemic acquired resistance6.32E-05
21GO:0015031: protein transport1.02E-04
22GO:0006623: protein targeting to vacuole1.25E-04
23GO:0000266: mitochondrial fission1.62E-04
24GO:0000162: tryptophan biosynthetic process3.17E-04
25GO:0009759: indole glucosinolate biosynthetic process3.35E-04
26GO:0009617: response to bacterium4.17E-04
27GO:0071456: cellular response to hypoxia5.32E-04
28GO:0043547: positive regulation of GTPase activity5.37E-04
29GO:1990641: response to iron ion starvation5.37E-04
30GO:0033306: phytol metabolic process5.37E-04
31GO:0050691: regulation of defense response to virus by host5.37E-04
32GO:0010230: alternative respiration5.37E-04
33GO:0009968: negative regulation of signal transduction5.37E-04
34GO:1990542: mitochondrial transmembrane transport5.37E-04
35GO:0032107: regulation of response to nutrient levels5.37E-04
36GO:1900057: positive regulation of leaf senescence5.72E-04
37GO:0009751: response to salicylic acid6.45E-04
38GO:0016559: peroxisome fission7.13E-04
39GO:0009636: response to toxic substance1.06E-03
40GO:0080181: lateral root branching1.16E-03
41GO:0006024: glycosaminoglycan biosynthetic process1.16E-03
42GO:0055088: lipid homeostasis1.16E-03
43GO:0006101: citrate metabolic process1.16E-03
44GO:0000719: photoreactive repair1.16E-03
45GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex1.16E-03
46GO:0015908: fatty acid transport1.16E-03
47GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.16E-03
48GO:0044419: interspecies interaction between organisms1.16E-03
49GO:0010200: response to chitin1.16E-03
50GO:0015012: heparan sulfate proteoglycan biosynthetic process1.16E-03
51GO:0051258: protein polymerization1.16E-03
52GO:0071668: plant-type cell wall assembly1.16E-03
53GO:0010193: response to ozone1.16E-03
54GO:0080183: response to photooxidative stress1.16E-03
55GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.22E-03
56GO:0009684: indoleacetic acid biosynthetic process1.65E-03
57GO:0006886: intracellular protein transport1.65E-03
58GO:0051607: defense response to virus1.73E-03
59GO:0045037: protein import into chloroplast stroma1.89E-03
60GO:0032504: multicellular organism reproduction1.90E-03
61GO:0010476: gibberellin mediated signaling pathway1.90E-03
62GO:0010325: raffinose family oligosaccharide biosynthetic process1.90E-03
63GO:0009410: response to xenobiotic stimulus1.90E-03
64GO:0015692: lead ion transport1.90E-03
65GO:0052546: cell wall pectin metabolic process1.90E-03
66GO:0015695: organic cation transport1.90E-03
67GO:0080168: abscisic acid transport1.90E-03
68GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.90E-03
69GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.90E-03
70GO:0080163: regulation of protein serine/threonine phosphatase activity1.90E-03
71GO:0071398: cellular response to fatty acid1.90E-03
72GO:0072661: protein targeting to plasma membrane1.90E-03
73GO:0006065: UDP-glucuronate biosynthetic process1.90E-03
74GO:0015783: GDP-fucose transport1.90E-03
75GO:0009620: response to fungus2.08E-03
76GO:0002237: response to molecule of bacterial origin2.43E-03
77GO:0090351: seedling development2.72E-03
78GO:0070301: cellular response to hydrogen peroxide2.75E-03
79GO:0051639: actin filament network formation2.75E-03
80GO:0002239: response to oomycetes2.75E-03
81GO:0010731: protein glutathionylation2.75E-03
82GO:0015696: ammonium transport2.75E-03
83GO:0071323: cellular response to chitin2.75E-03
84GO:0080024: indolebutyric acid metabolic process2.75E-03
85GO:0055070: copper ion homeostasis2.75E-03
86GO:0001676: long-chain fatty acid metabolic process2.75E-03
87GO:0055089: fatty acid homeostasis2.75E-03
88GO:0010116: positive regulation of abscisic acid biosynthetic process2.75E-03
89GO:0007275: multicellular organism development3.23E-03
90GO:0080147: root hair cell development3.37E-03
91GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.71E-03
92GO:0051764: actin crosslink formation3.71E-03
93GO:0048830: adventitious root development3.71E-03
94GO:1901002: positive regulation of response to salt stress3.71E-03
95GO:0072488: ammonium transmembrane transport3.71E-03
96GO:0006621: protein retention in ER lumen3.71E-03
97GO:0015867: ATP transport3.71E-03
98GO:0006979: response to oxidative stress4.06E-03
99GO:0006631: fatty acid metabolic process4.42E-03
100GO:0031348: negative regulation of defense response4.48E-03
101GO:0016192: vesicle-mediated transport4.49E-03
102GO:0034052: positive regulation of plant-type hypersensitive response4.75E-03
103GO:0006097: glyoxylate cycle4.75E-03
104GO:0009229: thiamine diphosphate biosynthetic process4.75E-03
105GO:0051707: response to other organism4.90E-03
106GO:0010150: leaf senescence5.54E-03
107GO:0006777: Mo-molybdopterin cofactor biosynthetic process5.89E-03
108GO:0010256: endomembrane system organization5.89E-03
109GO:1900425: negative regulation of defense response to bacterium5.89E-03
110GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.89E-03
111GO:0033365: protein localization to organelle5.89E-03
112GO:0009228: thiamine biosynthetic process5.89E-03
113GO:0009643: photosynthetic acclimation5.89E-03
114GO:0006014: D-ribose metabolic process5.89E-03
115GO:0015866: ADP transport5.89E-03
116GO:0010182: sugar mediated signaling pathway6.74E-03
117GO:0045926: negative regulation of growth7.11E-03
118GO:0048444: floral organ morphogenesis7.11E-03
119GO:0002229: defense response to oomycetes8.34E-03
120GO:1900056: negative regulation of leaf senescence8.42E-03
121GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.42E-03
122GO:0000122: negative regulation of transcription from RNA polymerase II promoter8.42E-03
123GO:2000014: regulation of endosperm development8.42E-03
124GO:0006333: chromatin assembly or disassembly8.42E-03
125GO:1902074: response to salt8.42E-03
126GO:0010044: response to aluminum ion8.42E-03
127GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.42E-03
128GO:0009737: response to abscisic acid9.75E-03
129GO:0009850: auxin metabolic process9.81E-03
130GO:0045010: actin nucleation9.81E-03
131GO:0031540: regulation of anthocyanin biosynthetic process9.81E-03
132GO:0006102: isocitrate metabolic process9.81E-03
133GO:0010208: pollen wall assembly1.13E-02
134GO:0010120: camalexin biosynthetic process1.13E-02
135GO:0010417: glucuronoxylan biosynthetic process1.13E-02
136GO:0006997: nucleus organization1.13E-02
137GO:0010204: defense response signaling pathway, resistance gene-independent1.13E-02
138GO:0017004: cytochrome complex assembly1.13E-02
139GO:0015780: nucleotide-sugar transport1.28E-02
140GO:0009835: fruit ripening1.28E-02
141GO:0007338: single fertilization1.28E-02
142GO:0019432: triglyceride biosynthetic process1.28E-02
143GO:0010029: regulation of seed germination1.28E-02
144GO:0009816: defense response to bacterium, incompatible interaction1.28E-02
145GO:0009056: catabolic process1.28E-02
146GO:0000902: cell morphogenesis1.28E-02
147GO:0009627: systemic acquired resistance1.35E-02
148GO:0006906: vesicle fusion1.35E-02
149GO:0009086: methionine biosynthetic process1.44E-02
150GO:0008202: steroid metabolic process1.44E-02
151GO:0009817: defense response to fungus, incompatible interaction1.59E-02
152GO:0016441: posttranscriptional gene silencing1.61E-02
153GO:0051555: flavonol biosynthetic process1.61E-02
154GO:0009870: defense response signaling pathway, resistance gene-dependent1.61E-02
155GO:0000103: sulfate assimilation1.61E-02
156GO:0006032: chitin catabolic process1.61E-02
157GO:0009688: abscisic acid biosynthetic process1.61E-02
158GO:0009641: shade avoidance1.61E-02
159GO:0009407: toxin catabolic process1.75E-02
160GO:0019684: photosynthesis, light reaction1.79E-02
161GO:0009089: lysine biosynthetic process via diaminopimelate1.79E-02
162GO:0009682: induced systemic resistance1.79E-02
163GO:0052544: defense response by callose deposition in cell wall1.79E-02
164GO:0006099: tricarboxylic acid cycle2.11E-02
165GO:0040008: regulation of growth2.13E-02
166GO:2000012: regulation of auxin polar transport2.15E-02
167GO:0010102: lateral root morphogenesis2.15E-02
168GO:0030036: actin cytoskeleton organization2.15E-02
169GO:0018107: peptidyl-threonine phosphorylation2.15E-02
170GO:0007015: actin filament organization2.35E-02
171GO:0006887: exocytosis2.40E-02
172GO:0007033: vacuole organization2.55E-02
173GO:0009225: nucleotide-sugar metabolic process2.55E-02
174GO:0046688: response to copper ion2.55E-02
175GO:0010114: response to red light2.60E-02
176GO:0009408: response to heat2.67E-02
177GO:0007166: cell surface receptor signaling pathway2.68E-02
178GO:0046686: response to cadmium ion2.74E-02
179GO:0034976: response to endoplasmic reticulum stress2.75E-02
180GO:0006636: unsaturated fatty acid biosynthetic process2.75E-02
181GO:0009863: salicylic acid mediated signaling pathway2.96E-02
182GO:0030150: protein import into mitochondrial matrix2.96E-02
183GO:0051017: actin filament bundle assembly2.96E-02
184GO:0006289: nucleotide-excision repair2.96E-02
185GO:0009753: response to jasmonic acid2.96E-02
186GO:0006855: drug transmembrane transport3.04E-02
187GO:0031347: regulation of defense response3.15E-02
188GO:0051302: regulation of cell division3.18E-02
189GO:0006874: cellular calcium ion homeostasis3.18E-02
190GO:0006825: copper ion transport3.18E-02
191GO:0006334: nucleosome assembly3.40E-02
192GO:0009269: response to desiccation3.40E-02
193GO:0016998: cell wall macromolecule catabolic process3.40E-02
194GO:0009814: defense response, incompatible interaction3.63E-02
195GO:0016226: iron-sulfur cluster assembly3.63E-02
196GO:0010224: response to UV-B3.63E-02
197GO:0007005: mitochondrion organization3.63E-02
198GO:0006012: galactose metabolic process3.86E-02
199GO:0009693: ethylene biosynthetic process3.86E-02
200GO:0009411: response to UV3.86E-02
201GO:0042127: regulation of cell proliferation4.09E-02
202GO:0009306: protein secretion4.09E-02
203GO:0006970: response to osmotic stress4.27E-02
204GO:0009626: plant-type hypersensitive response4.40E-02
205GO:0010118: stomatal movement4.58E-02
206GO:0010051: xylem and phloem pattern formation4.58E-02
207GO:0009723: response to ethylene4.66E-02
208GO:0050832: defense response to fungus4.70E-02
209GO:0006952: defense response4.77E-02
210GO:0009960: endosperm development4.83E-02
211GO:0006520: cellular amino acid metabolic process4.83E-02
212GO:0045489: pectin biosynthetic process4.83E-02
213GO:0006662: glycerol ether metabolic process4.83E-02
214GO:0010197: polar nucleus fusion4.83E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
3GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
4GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity0.00E+00
5GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
6GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
7GO:0050334: thiaminase activity0.00E+00
8GO:0005046: KDEL sequence binding0.00E+00
9GO:0004555: alpha,alpha-trehalase activity0.00E+00
10GO:0005212: structural constituent of eye lens0.00E+00
11GO:0034338: short-chain carboxylesterase activity0.00E+00
12GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
13GO:0004656: procollagen-proline 4-dioxygenase activity1.44E-05
14GO:0005509: calcium ion binding2.68E-05
15GO:0004834: tryptophan synthase activity1.56E-04
16GO:0030247: polysaccharide binding3.51E-04
17GO:0031418: L-ascorbic acid binding3.65E-04
18GO:0102391: decanoate--CoA ligase activity4.47E-04
19GO:2001227: quercitrin binding5.37E-04
20GO:0015927: trehalase activity5.37E-04
21GO:0032266: phosphatidylinositol-3-phosphate binding5.37E-04
22GO:0070401: NADP+ binding5.37E-04
23GO:0047150: betaine-homocysteine S-methyltransferase activity5.37E-04
24GO:0030942: endoplasmic reticulum signal peptide binding5.37E-04
25GO:2001147: camalexin binding5.37E-04
26GO:0009000: selenocysteine lyase activity5.37E-04
27GO:0015245: fatty acid transporter activity5.37E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity5.37E-04
29GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity5.37E-04
30GO:0016229: steroid dehydrogenase activity5.37E-04
31GO:0008320: protein transmembrane transporter activity5.72E-04
32GO:0004467: long-chain fatty acid-CoA ligase activity5.72E-04
33GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.01E-04
34GO:0003994: aconitate hydratase activity1.16E-03
35GO:0032934: sterol binding1.16E-03
36GO:0015036: disulfide oxidoreductase activity1.16E-03
37GO:0050736: O-malonyltransferase activity1.16E-03
38GO:0010331: gibberellin binding1.16E-03
39GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.90E-03
40GO:0004324: ferredoxin-NADP+ reductase activity1.90E-03
41GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.90E-03
42GO:0016531: copper chaperone activity1.90E-03
43GO:0032403: protein complex binding1.90E-03
44GO:0005457: GDP-fucose transmembrane transporter activity1.90E-03
45GO:0003979: UDP-glucose 6-dehydrogenase activity1.90E-03
46GO:0017077: oxidative phosphorylation uncoupler activity2.75E-03
47GO:0030527: structural constituent of chromatin2.75E-03
48GO:0010178: IAA-amino acid conjugate hydrolase activity2.75E-03
49GO:0016656: monodehydroascorbate reductase (NADH) activity2.75E-03
50GO:0008106: alcohol dehydrogenase (NADP+) activity2.75E-03
51GO:0001046: core promoter sequence-specific DNA binding3.37E-03
52GO:0046923: ER retention sequence binding3.71E-03
53GO:0050378: UDP-glucuronate 4-epimerase activity3.71E-03
54GO:0004930: G-protein coupled receptor activity3.71E-03
55GO:0030170: pyridoxal phosphate binding3.97E-03
56GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.75E-03
57GO:0004623: phospholipase A2 activity4.75E-03
58GO:0005496: steroid binding4.75E-03
59GO:0030151: molybdenum ion binding4.75E-03
60GO:0008519: ammonium transmembrane transporter activity5.89E-03
61GO:0015217: ADP transmembrane transporter activity7.11E-03
62GO:0004747: ribokinase activity7.11E-03
63GO:0004144: diacylglycerol O-acyltransferase activity7.11E-03
64GO:0005347: ATP transmembrane transporter activity7.11E-03
65GO:0003978: UDP-glucose 4-epimerase activity7.11E-03
66GO:0050662: coenzyme binding7.25E-03
67GO:0043295: glutathione binding8.42E-03
68GO:0008312: 7S RNA binding9.81E-03
69GO:0047893: flavonol 3-O-glucosyltransferase activity9.81E-03
70GO:0052747: sinapyl alcohol dehydrogenase activity9.81E-03
71GO:0004033: aldo-keto reductase (NADP) activity9.81E-03
72GO:0004869: cysteine-type endopeptidase inhibitor activity9.81E-03
73GO:0008865: fructokinase activity9.81E-03
74GO:0004714: transmembrane receptor protein tyrosine kinase activity9.81E-03
75GO:0008483: transaminase activity1.08E-02
76GO:0008142: oxysterol binding1.13E-02
77GO:0015035: protein disulfide oxidoreductase activity1.17E-02
78GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.28E-02
79GO:0008375: acetylglucosaminyltransferase activity1.35E-02
80GO:0004806: triglyceride lipase activity1.43E-02
81GO:0030234: enzyme regulator activity1.61E-02
82GO:0004568: chitinase activity1.61E-02
83GO:0004864: protein phosphatase inhibitor activity1.61E-02
84GO:0045551: cinnamyl-alcohol dehydrogenase activity1.97E-02
85GO:0042803: protein homodimerization activity2.10E-02
86GO:0015297: antiporter activity2.13E-02
87GO:0004022: alcohol dehydrogenase (NAD) activity2.15E-02
88GO:0000149: SNARE binding2.20E-02
89GO:0051539: 4 iron, 4 sulfur cluster binding2.30E-02
90GO:0004364: glutathione transferase activity2.50E-02
91GO:0008061: chitin binding2.55E-02
92GO:0003712: transcription cofactor activity2.55E-02
93GO:0004970: ionotropic glutamate receptor activity2.55E-02
94GO:0005217: intracellular ligand-gated ion channel activity2.55E-02
95GO:0005484: SNAP receptor activity2.60E-02
96GO:0005198: structural molecule activity2.92E-02
97GO:0043130: ubiquitin binding2.96E-02
98GO:0051536: iron-sulfur cluster binding2.96E-02
99GO:0015079: potassium ion transmembrane transporter activity3.18E-02
100GO:0035251: UDP-glucosyltransferase activity3.40E-02
101GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.63E-02
102GO:0008810: cellulase activity3.86E-02
103GO:0004499: N,N-dimethylaniline monooxygenase activity4.09E-02
104GO:0003682: chromatin binding4.18E-02
105GO:0005102: receptor binding4.33E-02
106GO:0047134: protein-disulfide reductase activity4.33E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane3.08E-08
2GO:0005794: Golgi apparatus4.40E-06
3GO:0005789: endoplasmic reticulum membrane1.44E-05
4GO:0017119: Golgi transport complex1.06E-04
5GO:0005886: plasma membrane4.34E-04
6GO:0005801: cis-Golgi network4.47E-04
7GO:0005741: mitochondrial outer membrane4.73E-04
8GO:0045252: oxoglutarate dehydrogenase complex5.37E-04
9GO:0005783: endoplasmic reticulum5.71E-04
10GO:0031314: extrinsic component of mitochondrial inner membrane1.16E-03
11GO:0030134: ER to Golgi transport vesicle1.16E-03
12GO:0000814: ESCRT II complex1.16E-03
13GO:0030665: clathrin-coated vesicle membrane1.22E-03
14GO:0042406: extrinsic component of endoplasmic reticulum membrane1.90E-03
15GO:0005743: mitochondrial inner membrane2.04E-03
16GO:0005802: trans-Golgi network2.28E-03
17GO:0005795: Golgi stack2.72E-03
18GO:0032432: actin filament bundle2.75E-03
19GO:0030658: transport vesicle membrane2.75E-03
20GO:0005768: endosome3.10E-03
21GO:0031902: late endosome membrane4.42E-03
22GO:0000813: ESCRT I complex4.75E-03
23GO:0000164: protein phosphatase type 1 complex4.75E-03
24GO:0009506: plasmodesma6.66E-03
25GO:0005885: Arp2/3 protein complex7.11E-03
26GO:0009504: cell plate7.78E-03
27GO:0031965: nuclear membrane7.78E-03
28GO:0005829: cytosol7.99E-03
29GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane8.42E-03
30GO:0032580: Golgi cisterna membrane1.01E-02
31GO:0005778: peroxisomal membrane1.08E-02
32GO:0005779: integral component of peroxisomal membrane1.13E-02
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.13E-02
34GO:0031901: early endosome membrane1.28E-02
35GO:0008540: proteasome regulatory particle, base subcomplex1.44E-02
36GO:0005623: cell1.56E-02
37GO:0031225: anchored component of membrane1.73E-02
38GO:0005884: actin filament1.79E-02
39GO:0031201: SNARE complex2.40E-02
40GO:0005769: early endosome2.75E-02
41GO:0005777: peroxisome2.76E-02
42GO:0005758: mitochondrial intermembrane space2.96E-02
43GO:0046658: anchored component of plasma membrane3.21E-02
44GO:0005744: mitochondrial inner membrane presequence translocase complex4.09E-02
45GO:0005887: integral component of plasma membrane4.17E-02
46GO:0005770: late endosome4.83E-02
47GO:0000139: Golgi membrane4.91E-02
48GO:0009706: chloroplast inner membrane4.96E-02
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Gene type



Gene DE type