Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G03710

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
2GO:0007037: vacuolar phosphate transport0.00E+00
3GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0006573: valine metabolic process0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:1905177: tracheary element differentiation0.00E+00
8GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0008298: intracellular mRNA localization0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0070979: protein K11-linked ubiquitination0.00E+00
13GO:1900871: chloroplast mRNA modification5.37E-06
14GO:0080110: sporopollenin biosynthetic process1.16E-04
15GO:0045038: protein import into chloroplast thylakoid membrane1.16E-04
16GO:0016123: xanthophyll biosynthetic process1.16E-04
17GO:0009658: chloroplast organization1.71E-04
18GO:0015969: guanosine tetraphosphate metabolic process3.44E-04
19GO:0009090: homoserine biosynthetic process3.44E-04
20GO:0051382: kinetochore assembly3.44E-04
21GO:0031426: polycistronic mRNA processing3.44E-04
22GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.44E-04
23GO:1902025: nitrate import3.44E-04
24GO:0000012: single strand break repair3.44E-04
25GO:0043266: regulation of potassium ion transport3.44E-04
26GO:0006551: leucine metabolic process3.44E-04
27GO:2000021: regulation of ion homeostasis3.44E-04
28GO:0070574: cadmium ion transmembrane transport3.44E-04
29GO:0051247: positive regulation of protein metabolic process3.44E-04
30GO:0090548: response to nitrate starvation3.44E-04
31GO:0000066: mitochondrial ornithine transport3.44E-04
32GO:1902458: positive regulation of stomatal opening3.44E-04
33GO:2000905: negative regulation of starch metabolic process3.44E-04
34GO:0006419: alanyl-tRNA aminoacylation3.44E-04
35GO:0048564: photosystem I assembly3.72E-04
36GO:0000373: Group II intron splicing5.47E-04
37GO:0009098: leucine biosynthetic process6.45E-04
38GO:0060359: response to ammonium ion7.51E-04
39GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole7.51E-04
40GO:0006432: phenylalanyl-tRNA aminoacylation7.51E-04
41GO:1903426: regulation of reactive oxygen species biosynthetic process7.51E-04
42GO:0031297: replication fork processing7.51E-04
43GO:0048586: regulation of long-day photoperiodism, flowering1.21E-03
44GO:0031145: anaphase-promoting complex-dependent catabolic process1.21E-03
45GO:0010623: programmed cell death involved in cell development1.21E-03
46GO:0006696: ergosterol biosynthetic process1.21E-03
47GO:0043157: response to cation stress1.21E-03
48GO:0005977: glycogen metabolic process1.21E-03
49GO:0010207: photosystem II assembly1.26E-03
50GO:0009226: nucleotide-sugar biosynthetic process1.75E-03
51GO:0051016: barbed-end actin filament capping1.75E-03
52GO:0042989: sequestering of actin monomers1.75E-03
53GO:2001141: regulation of RNA biosynthetic process1.75E-03
54GO:0090308: regulation of methylation-dependent chromatin silencing1.75E-03
55GO:0046836: glycolipid transport1.75E-03
56GO:0009067: aspartate family amino acid biosynthetic process1.75E-03
57GO:0030071: regulation of mitotic metaphase/anaphase transition1.75E-03
58GO:0010239: chloroplast mRNA processing1.75E-03
59GO:0009451: RNA modification2.06E-03
60GO:0009793: embryo development ending in seed dormancy2.15E-03
61GO:2000306: positive regulation of photomorphogenesis2.35E-03
62GO:0010508: positive regulation of autophagy2.35E-03
63GO:0008295: spermidine biosynthetic process2.35E-03
64GO:0010021: amylopectin biosynthetic process2.35E-03
65GO:0051322: anaphase2.35E-03
66GO:0006661: phosphatidylinositol biosynthetic process2.35E-03
67GO:0010584: pollen exine formation2.74E-03
68GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.96E-03
69GO:0016117: carotenoid biosynthetic process2.96E-03
70GO:0032876: negative regulation of DNA endoreduplication3.00E-03
71GO:0030041: actin filament polymerization3.00E-03
72GO:0010190: cytochrome b6f complex assembly3.71E-03
73GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.71E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.71E-03
75GO:0009959: negative gravitropism3.71E-03
76GO:0009082: branched-chain amino acid biosynthetic process4.47E-03
77GO:0009099: valine biosynthetic process4.47E-03
78GO:0009854: oxidative photosynthetic carbon pathway4.47E-03
79GO:0009088: threonine biosynthetic process4.47E-03
80GO:0051693: actin filament capping5.27E-03
81GO:0006400: tRNA modification5.27E-03
82GO:0051510: regulation of unidimensional cell growth5.27E-03
83GO:0000712: resolution of meiotic recombination intermediates5.27E-03
84GO:0009395: phospholipid catabolic process5.27E-03
85GO:0042255: ribosome assembly6.13E-03
86GO:0006353: DNA-templated transcription, termination6.13E-03
87GO:0070413: trehalose metabolism in response to stress6.13E-03
88GO:0006875: cellular metal ion homeostasis6.13E-03
89GO:0032875: regulation of DNA endoreduplication6.13E-03
90GO:2000070: regulation of response to water deprivation6.13E-03
91GO:0009738: abscisic acid-activated signaling pathway6.45E-03
92GO:0010029: regulation of seed germination6.52E-03
93GO:0009657: plastid organization7.03E-03
94GO:0009097: isoleucine biosynthetic process7.03E-03
95GO:0032544: plastid translation7.03E-03
96GO:0007129: synapsis7.03E-03
97GO:0071482: cellular response to light stimulus7.03E-03
98GO:0010206: photosystem II repair7.97E-03
99GO:0048507: meristem development7.97E-03
100GO:0010018: far-red light signaling pathway8.96E-03
101GO:0009086: methionine biosynthetic process8.96E-03
102GO:1900865: chloroplast RNA modification8.96E-03
103GO:0009299: mRNA transcription1.00E-02
104GO:0006259: DNA metabolic process1.00E-02
105GO:0045087: innate immune response1.02E-02
106GO:0006265: DNA topological change1.11E-02
107GO:0009089: lysine biosynthetic process via diaminopimelate1.11E-02
108GO:0006415: translational termination1.11E-02
109GO:0006352: DNA-templated transcription, initiation1.11E-02
110GO:0010216: maintenance of DNA methylation1.11E-02
111GO:0055114: oxidation-reduction process1.15E-02
112GO:0045037: protein import into chloroplast stroma1.22E-02
113GO:0030036: actin cytoskeleton organization1.33E-02
114GO:0009718: anthocyanin-containing compound biosynthetic process1.33E-02
115GO:0009725: response to hormone1.33E-02
116GO:0006541: glutamine metabolic process1.45E-02
117GO:0007015: actin filament organization1.45E-02
118GO:0006302: double-strand break repair1.45E-02
119GO:0090351: seedling development1.58E-02
120GO:0042753: positive regulation of circadian rhythm1.70E-02
121GO:0030150: protein import into mitochondrial matrix1.83E-02
122GO:0007010: cytoskeleton organization1.83E-02
123GO:0006289: nucleotide-excision repair1.83E-02
124GO:0005992: trehalose biosynthetic process1.83E-02
125GO:0008299: isoprenoid biosynthetic process1.96E-02
126GO:0048316: seed development2.18E-02
127GO:0031348: negative regulation of defense response2.24E-02
128GO:0009416: response to light stimulus2.30E-02
129GO:0009740: gibberellic acid mediated signaling pathway2.40E-02
130GO:0019722: calcium-mediated signaling2.53E-02
131GO:0009306: protein secretion2.53E-02
132GO:0010089: xylem development2.53E-02
133GO:0006396: RNA processing2.62E-02
134GO:0008033: tRNA processing2.83E-02
135GO:0010087: phloem or xylem histogenesis2.83E-02
136GO:0045489: pectin biosynthetic process2.99E-02
137GO:0046323: glucose import2.99E-02
138GO:0010268: brassinosteroid homeostasis2.99E-02
139GO:0007018: microtubule-based movement3.15E-02
140GO:0007059: chromosome segregation3.15E-02
141GO:0009791: post-embryonic development3.31E-02
142GO:0019252: starch biosynthetic process3.31E-02
143GO:0008654: phospholipid biosynthetic process3.31E-02
144GO:0055072: iron ion homeostasis3.31E-02
145GO:0016132: brassinosteroid biosynthetic process3.47E-02
146GO:0010583: response to cyclopentenone3.64E-02
147GO:0019761: glucosinolate biosynthetic process3.64E-02
148GO:0032502: developmental process3.64E-02
149GO:0009630: gravitropism3.64E-02
150GO:0007264: small GTPase mediated signal transduction3.64E-02
151GO:0006397: mRNA processing3.78E-02
152GO:0009639: response to red or far red light3.98E-02
153GO:0006464: cellular protein modification process3.98E-02
154GO:0016125: sterol metabolic process3.98E-02
155GO:0006413: translational initiation4.09E-02
156GO:0007267: cell-cell signaling4.15E-02
157GO:0000910: cytokinesis4.33E-02
158GO:0010027: thylakoid membrane organization4.51E-02
159GO:0016126: sterol biosynthetic process4.51E-02
160GO:0005975: carbohydrate metabolic process4.59E-02
161GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.69E-02
162GO:0007166: cell surface receptor signaling pathway5.00E-02
RankGO TermAdjusted P value
1GO:0019144: ADP-sugar diphosphatase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
9GO:0080042: ADP-glucose pyrophosphohydrolase activity3.44E-04
10GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity3.44E-04
11GO:0004813: alanine-tRNA ligase activity3.44E-04
12GO:0005290: L-histidine transmembrane transporter activity3.44E-04
13GO:0016618: hydroxypyruvate reductase activity3.44E-04
14GO:0051996: squalene synthase activity3.44E-04
15GO:0003984: acetolactate synthase activity3.44E-04
16GO:0008242: omega peptidase activity3.44E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.44E-04
18GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.44E-04
19GO:0004451: isocitrate lyase activity3.44E-04
20GO:0016776: phosphotransferase activity, phosphate group as acceptor3.44E-04
21GO:0043022: ribosome binding3.72E-04
22GO:0003690: double-stranded DNA binding5.35E-04
23GO:0000064: L-ornithine transmembrane transporter activity7.51E-04
24GO:0004826: phenylalanine-tRNA ligase activity7.51E-04
25GO:0004412: homoserine dehydrogenase activity7.51E-04
26GO:0019156: isoamylase activity7.51E-04
27GO:0048531: beta-1,3-galactosyltransferase activity7.51E-04
28GO:0034722: gamma-glutamyl-peptidase activity7.51E-04
29GO:0008728: GTP diphosphokinase activity7.51E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.51E-04
31GO:0003862: 3-isopropylmalate dehydrogenase activity7.51E-04
32GO:0010291: carotene beta-ring hydroxylase activity7.51E-04
33GO:0017118: lipoyltransferase activity7.51E-04
34GO:0080041: ADP-ribose pyrophosphohydrolase activity7.51E-04
35GO:0043425: bHLH transcription factor binding7.51E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity7.51E-04
37GO:0004766: spermidine synthase activity7.51E-04
38GO:0016597: amino acid binding7.52E-04
39GO:0003723: RNA binding8.00E-04
40GO:0000049: tRNA binding9.90E-04
41GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.21E-03
43GO:0003861: 3-isopropylmalate dehydratase activity1.21E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.21E-03
45GO:0070402: NADPH binding1.21E-03
46GO:0004180: carboxypeptidase activity1.21E-03
47GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.26E-03
48GO:0005354: galactose transmembrane transporter activity1.75E-03
49GO:0048027: mRNA 5'-UTR binding1.75E-03
50GO:0015181: arginine transmembrane transporter activity1.75E-03
51GO:0015086: cadmium ion transmembrane transporter activity1.75E-03
52GO:0004792: thiosulfate sulfurtransferase activity1.75E-03
53GO:0016149: translation release factor activity, codon specific1.75E-03
54GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.75E-03
55GO:0017172: cysteine dioxygenase activity1.75E-03
56GO:0015189: L-lysine transmembrane transporter activity1.75E-03
57GO:0017089: glycolipid transporter activity1.75E-03
58GO:0004072: aspartate kinase activity1.75E-03
59GO:0080032: methyl jasmonate esterase activity2.35E-03
60GO:0016987: sigma factor activity2.35E-03
61GO:0070628: proteasome binding2.35E-03
62GO:0052793: pectin acetylesterase activity2.35E-03
63GO:0042277: peptide binding2.35E-03
64GO:0001053: plastid sigma factor activity2.35E-03
65GO:0016836: hydro-lyase activity2.35E-03
66GO:0051861: glycolipid binding2.35E-03
67GO:0003785: actin monomer binding3.00E-03
68GO:0031593: polyubiquitin binding3.71E-03
69GO:0050662: coenzyme binding3.71E-03
70GO:0004556: alpha-amylase activity3.71E-03
71GO:0004462: lactoylglutathione lyase activity3.71E-03
72GO:0008200: ion channel inhibitor activity3.71E-03
73GO:0080030: methyl indole-3-acetate esterase activity3.71E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity4.47E-03
75GO:0008195: phosphatidate phosphatase activity4.47E-03
76GO:0005525: GTP binding5.18E-03
77GO:0015103: inorganic anion transmembrane transporter activity5.27E-03
78GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.03E-03
79GO:0008236: serine-type peptidase activity7.65E-03
80GO:0003747: translation release factor activity7.97E-03
81GO:0015144: carbohydrate transmembrane transporter activity8.03E-03
82GO:0004222: metalloendopeptidase activity8.89E-03
83GO:0005351: sugar:proton symporter activity9.36E-03
84GO:0004805: trehalose-phosphatase activity1.00E-02
85GO:0003993: acid phosphatase activity1.07E-02
86GO:0005089: Rho guanyl-nucleotide exchange factor activity1.11E-02
87GO:0016491: oxidoreductase activity1.33E-02
88GO:0015266: protein channel activity1.33E-02
89GO:0008081: phosphoric diester hydrolase activity1.33E-02
90GO:0009982: pseudouridine synthase activity1.33E-02
91GO:0008266: poly(U) RNA binding1.45E-02
92GO:0051287: NAD binding1.60E-02
93GO:0004672: protein kinase activity1.64E-02
94GO:0031418: L-ascorbic acid binding1.83E-02
95GO:0043130: ubiquitin binding1.83E-02
96GO:0003779: actin binding2.47E-02
97GO:0003727: single-stranded RNA binding2.53E-02
98GO:0003824: catalytic activity2.70E-02
99GO:0008080: N-acetyltransferase activity2.99E-02
100GO:0004527: exonuclease activity2.99E-02
101GO:0046873: metal ion transmembrane transporter activity2.99E-02
102GO:0008536: Ran GTPase binding2.99E-02
103GO:0005355: glucose transmembrane transporter activity3.15E-02
104GO:0016853: isomerase activity3.15E-02
105GO:0019843: rRNA binding3.19E-02
106GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.27E-02
107GO:0019901: protein kinase binding3.31E-02
108GO:0016787: hydrolase activity3.32E-02
109GO:0048038: quinone binding3.47E-02
110GO:0003924: GTPase activity3.58E-02
111GO:0004518: nuclease activity3.64E-02
112GO:0004519: endonuclease activity3.97E-02
113GO:0003684: damaged DNA binding3.98E-02
114GO:0016791: phosphatase activity3.98E-02
115GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.09E-02
116GO:0008017: microtubule binding4.58E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast2.60E-20
4GO:0009570: chloroplast stroma1.42E-05
5GO:0043240: Fanconi anaemia nuclear complex3.44E-04
6GO:0071821: FANCM-MHF complex3.44E-04
7GO:0080085: signal recognition particle, chloroplast targeting7.51E-04
8GO:0008290: F-actin capping protein complex7.51E-04
9GO:0033281: TAT protein transport complex1.21E-03
10GO:0009536: plastid1.29E-03
11GO:0042651: thylakoid membrane1.92E-03
12GO:0009535: chloroplast thylakoid membrane1.98E-03
13GO:0009941: chloroplast envelope2.22E-03
14GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.35E-03
15GO:0030663: COPI-coated vesicle membrane2.35E-03
16GO:0009295: nucleoid5.49E-03
17GO:0031305: integral component of mitochondrial inner membrane6.13E-03
18GO:0009501: amyloplast6.13E-03
19GO:0030529: intracellular ribonucleoprotein complex6.16E-03
20GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.03E-03
21GO:0042644: chloroplast nucleoid7.97E-03
22GO:0005720: nuclear heterochromatin7.97E-03
23GO:0005680: anaphase-promoting complex7.97E-03
24GO:0016604: nuclear body8.96E-03
25GO:0009579: thylakoid9.33E-03
26GO:0030125: clathrin vesicle coat1.00E-02
27GO:0009508: plastid chromosome1.33E-02
28GO:0005938: cell cortex1.33E-02
29GO:0009574: preprophase band1.33E-02
30GO:0046658: anchored component of plasma membrane1.38E-02
31GO:0030176: integral component of endoplasmic reticulum membrane1.58E-02
32GO:0009654: photosystem II oxygen evolving complex1.96E-02
33GO:0009532: plastid stroma2.10E-02
34GO:0031969: chloroplast membrane2.21E-02
35GO:0015629: actin cytoskeleton2.38E-02
36GO:0005744: mitochondrial inner membrane presequence translocase complex2.53E-02
37GO:0009706: chloroplast inner membrane2.55E-02
38GO:0005871: kinesin complex2.68E-02
39GO:0010287: plastoglobule3.02E-02
40GO:0009543: chloroplast thylakoid lumen3.19E-02
41GO:0005623: cell3.27E-02
42GO:0019898: extrinsic component of membrane3.31E-02
43GO:0005759: mitochondrial matrix4.00E-02
44GO:0043231: intracellular membrane-bounded organelle4.04E-02
45GO:0009705: plant-type vacuole membrane4.38E-02
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Gene type



Gene DE type