co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G02390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0048034: heme O biosynthetic process	0.00E+00
5	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
6	GO:0030149: sphingolipid catabolic process	0.00E+00
7	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
8	GO:0010398: xylogalacturonan metabolic process	0.00E+00
9	GO:0000162: tryptophan biosynthetic process	1.89E-05
10	GO:0046283: anthocyanin-containing compound metabolic process	2.79E-05
11	GO:0006564: L-serine biosynthetic process	2.79E-05
12	GO:0055114: oxidation-reduction process	5.55E-05
13	GO:0009851: auxin biosynthetic process	8.48E-05
14	GO:0046686: response to cadmium ion	9.27E-05
15	GO:0007186: G-protein coupled receptor signaling pathway	1.27E-04
16	GO:0042964: thioredoxin reduction	1.46E-04
17	GO:0060862: negative regulation of floral organ abscission	1.46E-04
18	GO:0006979: response to oxidative stress	1.47E-04
19	GO:0045454: cell redox homeostasis	1.82E-04
20	GO:0009407: toxin catabolic process	2.67E-04
21	GO:0046939: nucleotide phosphorylation	3.33E-04
22	GO:0031349: positive regulation of defense response	3.33E-04
23	GO:0015865: purine nucleotide transport	3.33E-04
24	GO:0019752: carboxylic acid metabolic process	3.33E-04
25	GO:0006807: nitrogen compound metabolic process	3.41E-04
26	GO:0010272: response to silver ion	5.47E-04
27	GO:0006591: ornithine metabolic process	5.47E-04
28	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.47E-04
29	GO:0002230: positive regulation of defense response to virus by host	5.47E-04
30	GO:0055074: calcium ion homeostasis	5.47E-04
31	GO:0061158: 3'-UTR-mediated mRNA destabilization	5.47E-04
32	GO:0016998: cell wall macromolecule catabolic process	6.43E-04
33	GO:0006571: tyrosine biosynthetic process	7.83E-04
34	GO:0046902: regulation of mitochondrial membrane permeability	7.83E-04
35	GO:1902290: positive regulation of defense response to oomycetes	7.83E-04
36	GO:0006662: glycerol ether metabolic process	1.03E-03
37	GO:0045227: capsule polysaccharide biosynthetic process	1.04E-03
38	GO:0033358: UDP-L-arabinose biosynthetic process	1.04E-03
39	GO:0010600: regulation of auxin biosynthetic process	1.04E-03
40	GO:0010188: response to microbial phytotoxin	1.04E-03
41	GO:0006878: cellular copper ion homeostasis	1.04E-03
42	GO:1901657: glycosyl compound metabolic process	1.44E-03
43	GO:0042744: hydrogen peroxide catabolic process	1.57E-03
44	GO:0010942: positive regulation of cell death	1.61E-03
45	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.61E-03
46	GO:0009228: thiamine biosynthetic process	1.61E-03
47	GO:0009972: cytidine deamination	1.61E-03
48	GO:0006561: proline biosynthetic process	1.61E-03
49	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.93E-03
50	GO:0009094: L-phenylalanine biosynthetic process	1.93E-03
51	GO:0045926: negative regulation of growth	1.93E-03
52	GO:0009082: branched-chain amino acid biosynthetic process	1.93E-03
53	GO:0009099: valine biosynthetic process	1.93E-03
54	GO:0010150: leaf senescence	2.00E-03
55	GO:1900056: negative regulation of leaf senescence	2.27E-03
56	GO:0071669: plant-type cell wall organization or biogenesis	2.27E-03
57	GO:0050829: defense response to Gram-negative bacterium	2.27E-03
58	GO:1900057: positive regulation of leaf senescence	2.27E-03
59	GO:0006499: N-terminal protein myristoylation	2.60E-03
60	GO:0006102: isocitrate metabolic process	2.63E-03
61	GO:0009819: drought recovery	2.63E-03
62	GO:0042742: defense response to bacterium	2.65E-03
63	GO:0022900: electron transport chain	3.00E-03
64	GO:0015996: chlorophyll catabolic process	3.00E-03
65	GO:0010497: plasmodesmata-mediated intercellular transport	3.00E-03
66	GO:0019430: removal of superoxide radicals	3.00E-03
67	GO:0010120: camalexin biosynthetic process	3.00E-03
68	GO:0009097: isoleucine biosynthetic process	3.00E-03
69	GO:0010204: defense response signaling pathway, resistance gene-independent	3.00E-03
70	GO:0034599: cellular response to oxidative stress	3.11E-03
71	GO:0046685: response to arsenic-containing substance	3.40E-03
72	GO:0006783: heme biosynthetic process	3.40E-03
73	GO:0010112: regulation of systemic acquired resistance	3.40E-03
74	GO:1900426: positive regulation of defense response to bacterium	3.81E-03
75	GO:0009098: leucine biosynthetic process	3.81E-03
76	GO:2000280: regulation of root development	3.81E-03
77	GO:0043069: negative regulation of programmed cell death	4.23E-03
78	GO:0006032: chitin catabolic process	4.23E-03
79	GO:0009688: abscisic acid biosynthetic process	4.23E-03
80	GO:0009636: response to toxic substance	4.30E-03
81	GO:0052544: defense response by callose deposition in cell wall	4.67E-03
82	GO:0072593: reactive oxygen species metabolic process	4.67E-03
83	GO:0000272: polysaccharide catabolic process	4.67E-03
84	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.13E-03
85	GO:0071365: cellular response to auxin stimulus	5.13E-03
86	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
87	GO:0009785: blue light signaling pathway	5.60E-03
88	GO:0050832: defense response to fungus	5.67E-03
89	GO:0009626: plant-type hypersensitive response	6.48E-03
90	GO:0009225: nucleotide-sugar metabolic process	6.59E-03
91	GO:0010167: response to nitrate	6.59E-03
92	GO:0009651: response to salt stress	7.19E-03
93	GO:0005992: trehalose biosynthetic process	7.63E-03
94	GO:0045333: cellular respiration	7.63E-03
95	GO:0006874: cellular calcium ion homeostasis	8.18E-03
96	GO:0048511: rhythmic process	8.73E-03
97	GO:0009058: biosynthetic process	9.67E-03
98	GO:0006012: galactose metabolic process	9.89E-03
99	GO:0071215: cellular response to abscisic acid stimulus	9.89E-03
100	GO:0042127: regulation of cell proliferation	1.05E-02
101	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.11E-02
102	GO:0042147: retrograde transport, endosome to Golgi	1.11E-02
103	GO:0042631: cellular response to water deprivation	1.17E-02
104	GO:0045489: pectin biosynthetic process	1.24E-02
105	GO:0006520: cellular amino acid metabolic process	1.24E-02
106	GO:0006814: sodium ion transport	1.30E-02
107	GO:0048544: recognition of pollen	1.30E-02
108	GO:0010183: pollen tube guidance	1.37E-02
109	GO:0009749: response to glucose	1.37E-02
110	GO:0006891: intra-Golgi vesicle-mediated transport	1.43E-02
111	GO:0009630: gravitropism	1.50E-02
112	GO:0009617: response to bacterium	1.52E-02
113	GO:0009409: response to cold	1.62E-02
114	GO:0051607: defense response to virus	1.79E-02
115	GO:0009615: response to virus	1.86E-02
116	GO:0010027: thylakoid membrane organization	1.86E-02
117	GO:0006952: defense response	1.89E-02
118	GO:0005975: carbohydrate metabolic process	1.92E-02
119	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.94E-02
120	GO:0009627: systemic acquired resistance	2.01E-02
121	GO:0006974: cellular response to DNA damage stimulus	2.01E-02
122	GO:0006888: ER to Golgi vesicle-mediated transport	2.09E-02
123	GO:0016049: cell growth	2.17E-02
124	GO:0008219: cell death	2.25E-02
125	GO:0010311: lateral root formation	2.33E-02
126	GO:0010043: response to zinc ion	2.49E-02
127	GO:0007568: aging	2.49E-02
128	GO:0010119: regulation of stomatal movement	2.49E-02
129	GO:0006099: tricarboxylic acid cycle	2.75E-02
130	GO:0006839: mitochondrial transport	2.92E-02
131	GO:0042542: response to hydrogen peroxide	3.10E-02
132	GO:0009926: auxin polar transport	3.19E-02
133	GO:0051707: response to other organism	3.19E-02
134	GO:0016042: lipid catabolic process	3.50E-02
135	GO:0031347: regulation of defense response	3.65E-02
136	GO:0009664: plant-type cell wall organization	3.75E-02
137	GO:0009846: pollen germination	3.75E-02
138	GO:0042538: hyperosmotic salinity response	3.75E-02
139	GO:0006812: cation transport	3.75E-02
140	GO:0006813: potassium ion transport	3.94E-02
141	GO:0008152: metabolic process	3.96E-02
142	GO:0048316: seed development	4.54E-02
143	GO:0009620: response to fungus	4.75E-02
144	GO:0009740: gibberellic acid mediated signaling pathway	4.85E-02
145	GO:0042545: cell wall modification	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0051670: inulinase activity	0.00E+00
5	GO:0016247: channel regulator activity	0.00E+00
6	GO:0047844: deoxycytidine deaminase activity	0.00E+00
7	GO:0005095: GTPase inhibitor activity	0.00E+00
8	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
9	GO:0008495: protoheme IX farnesyltransferase activity	0.00E+00
10	GO:0019172: glyoxalase III activity	1.05E-06
11	GO:0004601: peroxidase activity	6.77E-06
12	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	4.18E-05
13	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	4.18E-05
14	GO:0004791: thioredoxin-disulfide reductase activity	7.62E-05
15	GO:0043295: glutathione binding	7.88E-05
16	GO:0004649: poly(ADP-ribose) glycohydrolase activity	1.46E-04
17	GO:0016229: steroid dehydrogenase activity	1.46E-04
18	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.46E-04
19	GO:2001227: quercitrin binding	1.46E-04
20	GO:0010013: N-1-naphthylphthalamic acid binding	1.46E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.46E-04
22	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.46E-04
23	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.46E-04
24	GO:0070401: NADP+ binding	1.46E-04
25	GO:0051669: fructan beta-fructosidase activity	1.46E-04
26	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.46E-04
27	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.46E-04
28	GO:0031219: levanase activity	1.46E-04
29	GO:2001147: camalexin binding	1.46E-04
30	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.46E-04
31	GO:0004566: beta-glucuronidase activity	3.33E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	3.33E-04
33	GO:0004364: glutathione transferase activity	4.24E-04
34	GO:0004049: anthranilate synthase activity	5.47E-04
35	GO:0001664: G-protein coupled receptor binding	5.47E-04
36	GO:0031683: G-protein beta/gamma-subunit complex binding	5.47E-04
37	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.47E-04
38	GO:0052654: L-leucine transaminase activity	7.83E-04
39	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	7.83E-04
40	GO:0052655: L-valine transaminase activity	7.83E-04
41	GO:0019201: nucleotide kinase activity	7.83E-04
42	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.83E-04
43	GO:0005432: calcium:sodium antiporter activity	7.83E-04
44	GO:0010178: IAA-amino acid conjugate hydrolase activity	7.83E-04
45	GO:0052656: L-isoleucine transaminase activity	7.83E-04
46	GO:0003824: catalytic activity	8.00E-04
47	GO:0047134: protein-disulfide reductase activity	8.94E-04
48	GO:0004659: prenyltransferase activity	1.04E-03
49	GO:0050373: UDP-arabinose 4-epimerase activity	1.04E-03
50	GO:0004834: tryptophan synthase activity	1.04E-03
51	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.04E-03
52	GO:0004084: branched-chain-amino-acid transaminase activity	1.04E-03
53	GO:0004930: G-protein coupled receptor activity	1.04E-03
54	GO:0004031: aldehyde oxidase activity	1.04E-03
55	GO:0050302: indole-3-acetaldehyde oxidase activity	1.04E-03
56	GO:0015035: protein disulfide oxidoreductase activity	1.05E-03
57	GO:0005471: ATP:ADP antiporter activity	1.31E-03
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.44E-03
59	GO:0003924: GTPase activity	1.47E-03
60	GO:0030170: pyridoxal phosphate binding	1.52E-03
61	GO:0008200: ion channel inhibitor activity	1.61E-03
62	GO:0035252: UDP-xylosyltransferase activity	1.61E-03
63	GO:0051020: GTPase binding	1.93E-03
64	GO:0051920: peroxiredoxin activity	1.93E-03
65	GO:0004126: cytidine deaminase activity	1.93E-03
66	GO:0004017: adenylate kinase activity	1.93E-03
67	GO:0003978: UDP-glucose 4-epimerase activity	1.93E-03
68	GO:0004602: glutathione peroxidase activity	1.93E-03
69	GO:0102483: scopolin beta-glucosidase activity	2.13E-03
70	GO:0016831: carboxy-lyase activity	2.27E-03
71	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.27E-03
72	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.63E-03
73	GO:0016209: antioxidant activity	2.63E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	2.63E-03
75	GO:0004311: farnesyltranstransferase activity	2.63E-03
76	GO:0015491: cation:cation antiporter activity	2.63E-03
77	GO:0008422: beta-glucosidase activity	3.25E-03
78	GO:0004568: chitinase activity	4.23E-03
79	GO:0004713: protein tyrosine kinase activity	4.23E-03
80	GO:0051287: NAD binding	4.63E-03
81	GO:0004177: aminopeptidase activity	4.67E-03
82	GO:0008794: arsenate reductase (glutaredoxin) activity	4.67E-03
83	GO:0052689: carboxylic ester hydrolase activity	5.18E-03
84	GO:0031072: heat shock protein binding	5.60E-03
85	GO:0004867: serine-type endopeptidase inhibitor activity	6.59E-03
86	GO:0008061: chitin binding	6.59E-03
87	GO:0005217: intracellular ligand-gated ion channel activity	6.59E-03
88	GO:0004970: ionotropic glutamate receptor activity	6.59E-03
89	GO:0051082: unfolded protein binding	7.32E-03
90	GO:0005525: GTP binding	7.49E-03
91	GO:0003727: single-stranded RNA binding	1.05E-02
92	GO:0005199: structural constituent of cell wall	1.24E-02
93	GO:0008080: N-acetyltransferase activity	1.24E-02
94	GO:0001085: RNA polymerase II transcription factor binding	1.24E-02
95	GO:0010181: FMN binding	1.30E-02
96	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.72E-02
97	GO:0008237: metallopeptidase activity	1.72E-02
98	GO:0016597: amino acid binding	1.79E-02
99	GO:0004683: calmodulin-dependent protein kinase activity	2.09E-02
100	GO:0004806: triglyceride lipase activity	2.09E-02
101	GO:0043531: ADP binding	2.16E-02
102	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.20E-02
103	GO:0030246: carbohydrate binding	2.25E-02
104	GO:0005507: copper ion binding	2.42E-02
105	GO:0030145: manganese ion binding	2.49E-02
106	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.49E-02
107	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.49E-02
108	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.66E-02
109	GO:0051537: 2 iron, 2 sulfur cluster binding	3.37E-02
110	GO:0005509: calcium ion binding	3.39E-02
111	GO:0005198: structural molecule activity	3.47E-02
112	GO:0009055: electron carrier activity	3.86E-02
113	GO:0045330: aspartyl esterase activity	4.24E-02
114	GO:0045735: nutrient reservoir activity	4.44E-02
115	GO:0030599: pectinesterase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005950: anthranilate synthase complex	3.33E-04
2	GO:0030139: endocytic vesicle	5.47E-04
3	GO:0009530: primary cell wall	5.47E-04
4	GO:0032585: multivesicular body membrane	7.83E-04
5	GO:0005788: endoplasmic reticulum lumen	1.92E-03
6	GO:0005829: cytosol	2.19E-03
7	GO:0031901: early endosome membrane	3.40E-03
8	GO:0009570: chloroplast stroma	3.50E-03
9	GO:0005765: lysosomal membrane	4.67E-03
10	GO:0005750: mitochondrial respiratory chain complex III	6.09E-03
11	GO:0005773: vacuole	6.20E-03
12	GO:0005769: early endosome	7.10E-03
13	GO:0005886: plasma membrane	7.29E-03
14	GO:0009505: plant-type cell wall	1.44E-02
15	GO:0071944: cell periphery	1.57E-02
16	GO:0032580: Golgi cisterna membrane	1.64E-02
17	GO:0005789: endoplasmic reticulum membrane	1.94E-02
18	GO:0005667: transcription factor complex	2.01E-02
19	GO:0005774: vacuolar membrane	2.28E-02
20	GO:0048046: apoplast	2.48E-02
21	GO:0005783: endoplasmic reticulum	2.92E-02
22	GO:0031977: thylakoid lumen	3.01E-02
23	GO:0090406: pollen tube	3.19E-02
24	GO:0005743: mitochondrial inner membrane	3.35E-02
25	GO:0005834: heterotrimeric G-protein complex	4.65E-02
26	GO:0009507: chloroplast	4.80E-02