co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G02340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002084: protein depalmitoylation	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0046680: response to DDT	0.00E+00
4	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
5	GO:0010398: xylogalacturonan metabolic process	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:0071985: multivesicular body sorting pathway	0.00E+00
8	GO:0006903: vesicle targeting	0.00E+00
9	GO:0006216: cytidine catabolic process	0.00E+00
10	GO:0016192: vesicle-mediated transport	3.65E-05
11	GO:0015031: protein transport	8.11E-05
12	GO:0046686: response to cadmium ion	1.62E-04
13	GO:0071669: plant-type cell wall organization or biogenesis	2.60E-04
14	GO:0000032: cell wall mannoprotein biosynthetic process	3.17E-04
15	GO:0019478: D-amino acid catabolic process	3.17E-04
16	GO:0006680: glucosylceramide catabolic process	3.17E-04
17	GO:0042964: thioredoxin reduction	3.17E-04
18	GO:1900384: regulation of flavonol biosynthetic process	3.17E-04
19	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.17E-04
20	GO:0006605: protein targeting	3.28E-04
21	GO:0006102: isocitrate metabolic process	3.28E-04
22	GO:0030163: protein catabolic process	5.10E-04
23	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	6.92E-04
24	GO:0080026: response to indolebutyric acid	6.92E-04
25	GO:0015709: thiosulfate transport	6.92E-04
26	GO:0071422: succinate transmembrane transport	6.92E-04
27	GO:0009805: coumarin biosynthetic process	6.92E-04
28	GO:0042853: L-alanine catabolic process	6.92E-04
29	GO:0006672: ceramide metabolic process	6.92E-04
30	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.79E-04
31	GO:0055046: microgametogenesis	9.95E-04
32	GO:0009062: fatty acid catabolic process	1.12E-03
33	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.12E-03
34	GO:0006556: S-adenosylmethionine biosynthetic process	1.12E-03
35	GO:0010253: UDP-rhamnose biosynthetic process	1.12E-03
36	GO:0072661: protein targeting to plasma membrane	1.12E-03
37	GO:0006517: protein deglycosylation	1.12E-03
38	GO:0010272: response to silver ion	1.12E-03
39	GO:0033591: response to L-ascorbic acid	1.12E-03
40	GO:0006099: tricarboxylic acid cycle	1.37E-03
41	GO:0006886: intracellular protein transport	1.46E-03
42	GO:0006612: protein targeting to membrane	1.61E-03
43	GO:0006893: Golgi to plasma membrane transport	1.61E-03
44	GO:0080024: indolebutyric acid metabolic process	1.61E-03
45	GO:0009298: GDP-mannose biosynthetic process	1.61E-03
46	GO:0015729: oxaloacetate transport	1.61E-03
47	GO:0009636: response to toxic substance	2.07E-03
48	GO:0033356: UDP-L-arabinose metabolic process	2.16E-03
49	GO:0010188: response to microbial phytotoxin	2.16E-03
50	GO:0006085: acetyl-CoA biosynthetic process	2.16E-03
51	GO:1902584: positive regulation of response to water deprivation	2.16E-03
52	GO:0010363: regulation of plant-type hypersensitive response	2.16E-03
53	GO:0071423: malate transmembrane transport	2.76E-03
54	GO:0006564: L-serine biosynthetic process	2.76E-03
55	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.76E-03
56	GO:0045927: positive regulation of growth	2.76E-03
57	GO:0042176: regulation of protein catabolic process	3.40E-03
58	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.40E-03
59	GO:0010315: auxin efflux	3.40E-03
60	GO:0035435: phosphate ion transmembrane transport	3.40E-03
61	GO:0009972: cytidine deamination	3.40E-03
62	GO:0006555: methionine metabolic process	3.40E-03
63	GO:0034389: lipid particle organization	4.10E-03
64	GO:0009082: branched-chain amino acid biosynthetic process	4.10E-03
65	GO:0017148: negative regulation of translation	4.10E-03
66	GO:0009099: valine biosynthetic process	4.10E-03
67	GO:0080113: regulation of seed growth	4.10E-03
68	GO:0019509: L-methionine salvage from methylthioadenosine	4.10E-03
69	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.84E-03
70	GO:0008272: sulfate transport	4.84E-03
71	GO:0050829: defense response to Gram-negative bacterium	4.84E-03
72	GO:0006744: ubiquinone biosynthetic process	4.84E-03
73	GO:0080186: developmental vegetative growth	4.84E-03
74	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.62E-03
75	GO:0009819: drought recovery	5.62E-03
76	GO:0006491: N-glycan processing	5.62E-03
77	GO:0019430: removal of superoxide radicals	6.44E-03
78	GO:0009097: isoleucine biosynthetic process	6.44E-03
79	GO:0006972: hyperosmotic response	6.44E-03
80	GO:0009699: phenylpropanoid biosynthetic process	6.44E-03
81	GO:0006002: fructose 6-phosphate metabolic process	6.44E-03
82	GO:0015996: chlorophyll catabolic process	6.44E-03
83	GO:0060321: acceptance of pollen	6.44E-03
84	GO:0055114: oxidation-reduction process	7.16E-03
85	GO:0046685: response to arsenic-containing substance	7.30E-03
86	GO:0009407: toxin catabolic process	7.83E-03
87	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.21E-03
88	GO:0043067: regulation of programmed cell death	8.21E-03
89	GO:0009098: leucine biosynthetic process	8.21E-03
90	GO:0010043: response to zinc ion	8.22E-03
91	GO:0006032: chitin catabolic process	9.15E-03
92	GO:0009688: abscisic acid biosynthetic process	9.15E-03
93	GO:0051555: flavonol biosynthetic process	9.15E-03
94	GO:0006511: ubiquitin-dependent protein catabolic process	9.35E-03
95	GO:0000272: polysaccharide catabolic process	1.01E-02
96	GO:0009651: response to salt stress	1.03E-02
97	GO:0006887: exocytosis	1.07E-02
98	GO:0006790: sulfur compound metabolic process	1.11E-02
99	GO:0009744: response to sucrose	1.16E-02
100	GO:0051707: response to other organism	1.16E-02
101	GO:0000209: protein polyubiquitination	1.21E-02
102	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.22E-02
103	GO:0010102: lateral root morphogenesis	1.22E-02
104	GO:0006807: nitrogen compound metabolic process	1.22E-02
105	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.41E-02
106	GO:0007030: Golgi organization	1.44E-02
107	GO:0019853: L-ascorbic acid biosynthetic process	1.44E-02
108	GO:0090351: seedling development	1.44E-02
109	GO:0046854: phosphatidylinositol phosphorylation	1.44E-02
110	GO:0007033: vacuole organization	1.44E-02
111	GO:0010053: root epidermal cell differentiation	1.44E-02
112	GO:0009225: nucleotide-sugar metabolic process	1.44E-02
113	GO:0007031: peroxisome organization	1.44E-02
114	GO:0009846: pollen germination	1.46E-02
115	GO:0034976: response to endoplasmic reticulum stress	1.56E-02
116	GO:0000162: tryptophan biosynthetic process	1.56E-02
117	GO:0009860: pollen tube growth	1.57E-02
118	GO:0006874: cellular calcium ion homeostasis	1.80E-02
119	GO:0008299: isoprenoid biosynthetic process	1.80E-02
120	GO:0016998: cell wall macromolecule catabolic process	1.92E-02
121	GO:0019915: lipid storage	1.92E-02
122	GO:0009814: defense response, incompatible interaction	2.05E-02
123	GO:0030433: ubiquitin-dependent ERAD pathway	2.05E-02
124	GO:0006730: one-carbon metabolic process	2.05E-02
125	GO:0009620: response to fungus	2.05E-02
126	GO:0019748: secondary metabolic process	2.05E-02
127	GO:0030245: cellulose catabolic process	2.05E-02
128	GO:0009693: ethylene biosynthetic process	2.18E-02
129	GO:0010227: floral organ abscission	2.18E-02
130	GO:0042127: regulation of cell proliferation	2.31E-02
131	GO:0009561: megagametogenesis	2.31E-02
132	GO:0009306: protein secretion	2.31E-02
133	GO:0045454: cell redox homeostasis	2.36E-02
134	GO:0042147: retrograde transport, endosome to Golgi	2.45E-02
135	GO:0042631: cellular response to water deprivation	2.59E-02
136	GO:0045489: pectin biosynthetic process	2.73E-02
137	GO:0006662: glycerol ether metabolic process	2.73E-02
138	GO:0009646: response to absence of light	2.88E-02
139	GO:0009058: biosynthetic process	2.96E-02
140	GO:0009751: response to salicylic acid	3.01E-02
141	GO:0009851: auxin biosynthetic process	3.02E-02
142	GO:0006623: protein targeting to vacuole	3.02E-02
143	GO:0006629: lipid metabolic process	3.07E-02
144	GO:0006891: intra-Golgi vesicle-mediated transport	3.17E-02
145	GO:0006635: fatty acid beta-oxidation	3.17E-02
146	GO:0016032: viral process	3.32E-02
147	GO:0071281: cellular response to iron ion	3.48E-02
148	GO:0006464: cellular protein modification process	3.64E-02
149	GO:0009567: double fertilization forming a zygote and endosperm	3.64E-02
150	GO:0019760: glucosinolate metabolic process	3.64E-02
151	GO:0006904: vesicle docking involved in exocytosis	3.80E-02
152	GO:0010150: leaf senescence	3.87E-02
153	GO:0045490: pectin catabolic process	3.87E-02
154	GO:0051607: defense response to virus	3.96E-02
155	GO:0001666: response to hypoxia	4.12E-02
156	GO:0009615: response to virus	4.12E-02
157	GO:0009816: defense response to bacterium, incompatible interaction	4.29E-02
158	GO:0006906: vesicle fusion	4.46E-02
159	GO:0009627: systemic acquired resistance	4.46E-02
160	GO:0009617: response to bacterium	4.61E-02
161	GO:0006888: ER to Golgi vesicle-mediated transport	4.63E-02
162	GO:0016049: cell growth	4.80E-02
163	GO:0009817: defense response to fungus, incompatible interaction	4.98E-02
164	GO:0030244: cellulose biosynthetic process	4.98E-02
165	GO:0008219: cell death	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0047844: deoxycytidine deaminase activity	0.00E+00
2	GO:0001729: ceramide kinase activity	0.00E+00
3	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0008320: protein transmembrane transporter activity	5.98E-06
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.61E-05
9	GO:0070401: NADP+ binding	3.17E-04
10	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	3.17E-04
11	GO:0032266: phosphatidylinositol-3-phosphate binding	3.17E-04
12	GO:0004476: mannose-6-phosphate isomerase activity	3.17E-04
13	GO:0004348: glucosylceramidase activity	3.17E-04
14	GO:0030942: endoplasmic reticulum signal peptide binding	3.17E-04
15	GO:0102293: pheophytinase b activity	3.17E-04
16	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.17E-04
17	GO:0016229: steroid dehydrogenase activity	3.17E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.17E-04
19	GO:0008805: carbon-monoxide oxygenase activity	6.92E-04
20	GO:1990585: hydroxyproline O-arabinosyltransferase activity	6.92E-04
21	GO:0052691: UDP-arabinopyranose mutase activity	6.92E-04
22	GO:0050377: UDP-glucose 4,6-dehydratase activity	6.92E-04
23	GO:1901677: phosphate transmembrane transporter activity	6.92E-04
24	GO:0015117: thiosulfate transmembrane transporter activity	6.92E-04
25	GO:0047746: chlorophyllase activity	6.92E-04
26	GO:0052739: phosphatidylserine 1-acylhydrolase activity	6.92E-04
27	GO:0010297: heteropolysaccharide binding	6.92E-04
28	GO:0008460: dTDP-glucose 4,6-dehydratase activity	6.92E-04
29	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	6.92E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	6.92E-04
31	GO:0010280: UDP-L-rhamnose synthase activity	6.92E-04
32	GO:0050347: trans-octaprenyltranstransferase activity	6.92E-04
33	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	6.92E-04
34	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.12E-03
35	GO:0015141: succinate transmembrane transporter activity	1.12E-03
36	GO:0004478: methionine adenosyltransferase activity	1.12E-03
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.12E-03
38	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.12E-03
39	GO:0015131: oxaloacetate transmembrane transporter activity	1.61E-03
40	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.61E-03
41	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.61E-03
42	GO:0052656: L-isoleucine transaminase activity	1.61E-03
43	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.61E-03
44	GO:0052654: L-leucine transaminase activity	1.61E-03
45	GO:0017077: oxidative phosphorylation uncoupler activity	1.61E-03
46	GO:0052655: L-valine transaminase activity	1.61E-03
47	GO:0003878: ATP citrate synthase activity	1.61E-03
48	GO:0005198: structural molecule activity	2.07E-03
49	GO:0070628: proteasome binding	2.16E-03
50	GO:0004084: branched-chain-amino-acid transaminase activity	2.16E-03
51	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.16E-03
52	GO:0004031: aldehyde oxidase activity	2.16E-03
53	GO:0050302: indole-3-acetaldehyde oxidase activity	2.16E-03
54	GO:0016866: intramolecular transferase activity	2.16E-03
55	GO:0004659: prenyltransferase activity	2.16E-03
56	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.76E-03
57	GO:0008374: O-acyltransferase activity	2.76E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	3.28E-03
59	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.40E-03
60	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.40E-03
61	GO:0035252: UDP-xylosyltransferase activity	3.40E-03
62	GO:0008474: palmitoyl-(protein) hydrolase activity	3.40E-03
63	GO:0050660: flavin adenine dinucleotide binding	4.00E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.10E-03
65	GO:0003950: NAD+ ADP-ribosyltransferase activity	4.10E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	4.10E-03
67	GO:0004126: cytidine deaminase activity	4.10E-03
68	GO:0003872: 6-phosphofructokinase activity	4.84E-03
69	GO:0015140: malate transmembrane transporter activity	4.84E-03
70	GO:0043295: glutathione binding	4.84E-03
71	GO:0052747: sinapyl alcohol dehydrogenase activity	5.62E-03
72	GO:0004033: aldo-keto reductase (NADP) activity	5.62E-03
73	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.62E-03
74	GO:0008312: 7S RNA binding	5.62E-03
75	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	6.44E-03
76	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	6.44E-03
77	GO:0003951: NAD+ kinase activity	6.44E-03
78	GO:0004630: phospholipase D activity	6.44E-03
79	GO:0045309: protein phosphorylated amino acid binding	8.21E-03
80	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.01E-03
81	GO:0030234: enzyme regulator activity	9.15E-03
82	GO:0004568: chitinase activity	9.15E-03
83	GO:0019904: protein domain specific binding	1.01E-02
84	GO:0004161: dimethylallyltranstransferase activity	1.01E-02
85	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.11E-02
86	GO:0015116: sulfate transmembrane transporter activity	1.11E-02
87	GO:0004364: glutathione transferase activity	1.12E-02
88	GO:0031072: heat shock protein binding	1.22E-02
89	GO:0031624: ubiquitin conjugating enzyme binding	1.33E-02
90	GO:0051287: NAD binding	1.41E-02
91	GO:0008061: chitin binding	1.44E-02
92	GO:0004970: ionotropic glutamate receptor activity	1.44E-02
93	GO:0005217: intracellular ligand-gated ion channel activity	1.44E-02
94	GO:0004867: serine-type endopeptidase inhibitor activity	1.44E-02
95	GO:0016887: ATPase activity	1.56E-02
96	GO:0051536: iron-sulfur cluster binding	1.67E-02
97	GO:0031418: L-ascorbic acid binding	1.67E-02
98	GO:0043130: ubiquitin binding	1.67E-02
99	GO:0031625: ubiquitin protein ligase binding	1.74E-02
100	GO:0004298: threonine-type endopeptidase activity	1.92E-02
101	GO:0061630: ubiquitin protein ligase activity	2.01E-02
102	GO:0008810: cellulase activity	2.18E-02
103	GO:0003824: catalytic activity	2.18E-02
104	GO:0016760: cellulose synthase (UDP-forming) activity	2.18E-02
105	GO:0003756: protein disulfide isomerase activity	2.31E-02
106	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.31E-02
107	GO:0003727: single-stranded RNA binding	2.31E-02
108	GO:0015035: protein disulfide oxidoreductase activity	2.31E-02
109	GO:0047134: protein-disulfide reductase activity	2.45E-02
110	GO:0001085: RNA polymerase II transcription factor binding	2.73E-02
111	GO:0016853: isomerase activity	2.88E-02
112	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
113	GO:0030170: pyridoxal phosphate binding	3.12E-02
114	GO:0004518: nuclease activity	3.32E-02
115	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.48E-02
116	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.80E-02
117	GO:0008237: metallopeptidase activity	3.80E-02
118	GO:0016597: amino acid binding	3.96E-02
119	GO:0051213: dioxygenase activity	4.12E-02
120	GO:0008375: acetylglucosaminyltransferase activity	4.46E-02
121	GO:0004806: triglyceride lipase activity	4.63E-02
122	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.63E-02
123	GO:0005509: calcium ion binding	4.76E-02
124	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005794: Golgi apparatus	6.72E-06
2	GO:0005829: cytosol	2.93E-05
3	GO:0000502: proteasome complex	4.81E-05
4	GO:0005789: endoplasmic reticulum membrane	1.52E-04
5	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.60E-04
6	GO:0045252: oxoglutarate dehydrogenase complex	3.17E-04
7	GO:0000138: Golgi trans cisterna	3.17E-04
8	GO:0005886: plasma membrane	4.36E-04
9	GO:0031901: early endosome membrane	4.84E-04
10	GO:0030134: ER to Golgi transport vesicle	6.92E-04
11	GO:0000814: ESCRT II complex	6.92E-04
12	GO:0008541: proteasome regulatory particle, lid subcomplex	7.70E-04
13	GO:0005783: endoplasmic reticulum	8.52E-04
14	GO:0030130: clathrin coat of trans-Golgi network vesicle	1.12E-03
15	GO:0030132: clathrin coat of coated pit	1.12E-03
16	GO:0009346: citrate lyase complex	1.61E-03
17	GO:0005839: proteasome core complex	1.86E-03
18	GO:0005945: 6-phosphofructokinase complex	2.76E-03
19	GO:0016592: mediator complex	4.02E-03
20	GO:0005801: cis-Golgi network	4.10E-03
21	GO:0030173: integral component of Golgi membrane	4.10E-03
22	GO:0032580: Golgi cisterna membrane	4.56E-03
23	GO:0031982: vesicle	5.62E-03
24	GO:0005788: endoplasmic reticulum lumen	5.75E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.44E-03
26	GO:0005811: lipid particle	6.44E-03
27	GO:0019773: proteasome core complex, alpha-subunit complex	6.44E-03
28	GO:0031090: organelle membrane	7.30E-03
29	GO:0030665: clathrin-coated vesicle membrane	8.21E-03
30	GO:0008540: proteasome regulatory particle, base subcomplex	8.21E-03
31	GO:0017119: Golgi transport complex	9.15E-03
32	GO:0016020: membrane	9.48E-03
33	GO:0031902: late endosome membrane	1.07E-02
34	GO:0000139: Golgi membrane	1.10E-02
35	GO:0016021: integral component of membrane	1.14E-02
36	GO:0005795: Golgi stack	1.44E-02
37	GO:0005768: endosome	1.55E-02
38	GO:0005769: early endosome	1.56E-02
39	GO:0005737: cytoplasm	2.30E-02
40	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.31E-02
41	GO:0005774: vacuolar membrane	2.71E-02
42	GO:0005770: late endosome	2.73E-02
43	GO:0009506: plasmodesma	2.84E-02
44	GO:0009504: cell plate	3.02E-02
45	GO:0019898: extrinsic component of membrane	3.02E-02
46	GO:0000145: exocyst	3.32E-02
47	GO:0071944: cell periphery	3.48E-02
48	GO:0005778: peroxisomal membrane	3.80E-02
49	GO:0005802: trans-Golgi network	3.82E-02
50	GO:0005667: transcription factor complex	4.46E-02
51	GO:0000151: ubiquitin ligase complex	4.98E-02