co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060966: regulation of gene silencing by RNA	0.00E+00
2	GO:0070829: heterochromatin maintenance	0.00E+00
3	GO:0071360: cellular response to exogenous dsRNA	0.00E+00
4	GO:1900370: positive regulation of RNA interference	0.00E+00
5	GO:2000604: negative regulation of secondary growth	0.00E+00
6	GO:0035563: positive regulation of chromatin binding	0.00E+00
7	GO:1900368: regulation of RNA interference	1.21E-06
8	GO:1900871: chloroplast mRNA modification	3.46E-06
9	GO:1900111: positive regulation of histone H3-K9 dimethylation	3.46E-06
10	GO:0010424: DNA methylation on cytosine within a CG sequence	3.46E-06
11	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.46E-06
12	GO:0032776: DNA methylation on cytosine	6.60E-06
13	GO:0060968: regulation of gene silencing	6.60E-06
14	GO:0060964: regulation of gene silencing by miRNA	1.06E-05
15	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.24E-05
16	GO:0006349: regulation of gene expression by genetic imprinting	7.20E-05
17	GO:0030422: production of siRNA involved in RNA interference	8.11E-05
18	GO:0010216: maintenance of DNA methylation	9.04E-05
19	GO:2000652: regulation of secondary cell wall biogenesis	9.04E-05
20	GO:0080188: RNA-directed DNA methylation	1.30E-04
21	GO:0006306: DNA methylation	1.74E-04
22	GO:0009294: DNA mediated transformation	1.98E-04
23	GO:0009910: negative regulation of flower development	4.78E-04
24	GO:0016569: covalent chromatin modification	8.73E-04
25	GO:0009658: chloroplast organization	1.72E-03
26	GO:0006468: protein phosphorylation	2.56E-03
27	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.11E-03
28	GO:0030154: cell differentiation	6.54E-03
29	GO:0009737: response to abscisic acid	1.04E-02
30	GO:0050832: defense response to fungus	1.32E-02

Rank	GO Term	Adjusted P value
1	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.30E-05
2	GO:0004672: protein kinase activity	5.20E-04
3	GO:0004386: helicase activity	9.59E-04
4	GO:0004674: protein serine/threonine kinase activity	1.65E-03
5	GO:0008168: methyltransferase activity	1.67E-03
6	GO:0003682: chromatin binding	1.78E-03
7	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.24E-03
8	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.40E-03
9	GO:0003677: DNA binding	3.12E-03
10	GO:0005524: ATP binding	4.40E-03
11	GO:0016301: kinase activity	5.53E-03
12	GO:0044212: transcription regulatory region DNA binding	6.16E-03
13	GO:0005515: protein binding	6.38E-03
14	GO:0003676: nucleic acid binding	1.67E-02
15	GO:0043565: sequence-specific DNA binding	1.95E-02

Rank	GO Term	Adjusted P value
1	GO:0090577: RNA polymerase IV transcription factor complex	0.00E+00
2	GO:0031618: nuclear pericentric heterochromatin	0.00E+00
3	GO:0000419: DNA-directed RNA polymerase V complex	1.41E-04
4	GO:0010008: endosome membrane	8.23E-04
5	GO:0005802: trans-Golgi network	5.24E-03
6	GO:0005768: endosome	5.73E-03
7	GO:0000139: Golgi membrane	7.60E-03
8	GO:0009570: chloroplast stroma	2.33E-02
9	GO:0009506: plasmodesma	3.85E-02
10	GO:0016021: integral component of membrane	4.22E-02
11	GO:0005794: Golgi apparatus	4.78E-02
12	GO:0005576: extracellular region	4.95E-02