co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01918

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
8	GO:0046620: regulation of organ growth	2.33E-05
9	GO:0015904: tetracycline transport	4.64E-04
10	GO:0000023: maltose metabolic process	4.64E-04
11	GO:0000025: maltose catabolic process	4.64E-04
12	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.64E-04
13	GO:0006285: base-excision repair, AP site formation	4.64E-04
14	GO:0030198: extracellular matrix organization	4.64E-04
15	GO:0046520: sphingoid biosynthetic process	4.64E-04
16	GO:0010480: microsporocyte differentiation	4.64E-04
17	GO:0042371: vitamin K biosynthetic process	4.64E-04
18	GO:1902458: positive regulation of stomatal opening	4.64E-04
19	GO:2000070: regulation of response to water deprivation	5.75E-04
20	GO:0010182: sugar mediated signaling pathway	6.77E-04
21	GO:0010583: response to cyclopentenone	9.61E-04
22	GO:0032502: developmental process	9.61E-04
23	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.00E-03
24	GO:0006568: tryptophan metabolic process	1.00E-03
25	GO:2000123: positive regulation of stomatal complex development	1.00E-03
26	GO:0006741: NADP biosynthetic process	1.00E-03
27	GO:0009629: response to gravity	1.00E-03
28	GO:0007154: cell communication	1.00E-03
29	GO:0018026: peptidyl-lysine monomethylation	1.00E-03
30	GO:0071497: cellular response to freezing	1.00E-03
31	GO:1900033: negative regulation of trichome patterning	1.00E-03
32	GO:0009786: regulation of asymmetric cell division	1.00E-03
33	GO:0031648: protein destabilization	1.00E-03
34	GO:0009733: response to auxin	1.07E-03
35	GO:0009641: shade avoidance	1.15E-03
36	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-03
37	GO:0010027: thylakoid membrane organization	1.40E-03
38	GO:0009416: response to light stimulus	1.44E-03
39	GO:0005983: starch catabolic process	1.52E-03
40	GO:0019674: NAD metabolic process	1.63E-03
41	GO:0033591: response to L-ascorbic acid	1.63E-03
42	GO:0019419: sulfate reduction	1.63E-03
43	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.63E-03
44	GO:0071398: cellular response to fatty acid	1.63E-03
45	GO:0010102: lateral root morphogenesis	1.73E-03
46	GO:0010628: positive regulation of gene expression	1.73E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.37E-03
48	GO:0010306: rhamnogalacturonan II biosynthetic process	2.37E-03
49	GO:1990019: protein storage vacuole organization	2.37E-03
50	GO:0010321: regulation of vegetative phase change	2.37E-03
51	GO:0019363: pyridine nucleotide biosynthetic process	2.37E-03
52	GO:0010371: regulation of gibberellin biosynthetic process	2.37E-03
53	GO:0009734: auxin-activated signaling pathway	2.99E-03
54	GO:0010109: regulation of photosynthesis	3.18E-03
55	GO:0042274: ribosomal small subunit biogenesis	3.18E-03
56	GO:2000038: regulation of stomatal complex development	3.18E-03
57	GO:0009755: hormone-mediated signaling pathway	3.18E-03
58	GO:1901141: regulation of lignin biosynthetic process	3.18E-03
59	GO:0048629: trichome patterning	3.18E-03
60	GO:0040008: regulation of growth	3.68E-03
61	GO:0009686: gibberellin biosynthetic process	3.92E-03
62	GO:0010438: cellular response to sulfur starvation	4.08E-03
63	GO:0010375: stomatal complex patterning	4.08E-03
64	GO:0045487: gibberellin catabolic process	4.08E-03
65	GO:0010236: plastoquinone biosynthetic process	4.08E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	4.08E-03
67	GO:0048497: maintenance of floral organ identity	4.08E-03
68	GO:0006855: drug transmembrane transport	4.50E-03
69	GO:0009959: negative gravitropism	5.05E-03
70	GO:0010358: leaf shaping	5.05E-03
71	GO:0016554: cytidine to uridine editing	5.05E-03
72	GO:0009913: epidermal cell differentiation	5.05E-03
73	GO:1902456: regulation of stomatal opening	5.05E-03
74	GO:0042793: transcription from plastid promoter	5.05E-03
75	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.05E-03
76	GO:0000741: karyogamy	5.05E-03
77	GO:0010405: arabinogalactan protein metabolic process	5.05E-03
78	GO:0016042: lipid catabolic process	5.23E-03
79	GO:0009741: response to brassinosteroid	5.39E-03
80	GO:0006351: transcription, DNA-templated	5.72E-03
81	GO:0042026: protein refolding	6.09E-03
82	GO:0042372: phylloquinone biosynthetic process	6.09E-03
83	GO:2000033: regulation of seed dormancy process	6.09E-03
84	GO:0009082: branched-chain amino acid biosynthetic process	6.09E-03
85	GO:0006458: 'de novo' protein folding	6.09E-03
86	GO:0031930: mitochondria-nucleus signaling pathway	6.09E-03
87	GO:0048509: regulation of meristem development	6.09E-03
88	GO:0009099: valine biosynthetic process	6.09E-03
89	GO:0030488: tRNA methylation	6.09E-03
90	GO:0010161: red light signaling pathway	7.20E-03
91	GO:0009772: photosynthetic electron transport in photosystem II	7.20E-03
92	GO:0048437: floral organ development	7.20E-03
93	GO:1901657: glycosyl compound metabolic process	7.60E-03
94	GO:0009658: chloroplast organization	7.68E-03
95	GO:0009828: plant-type cell wall loosening	8.09E-03
96	GO:0009819: drought recovery	8.39E-03
97	GO:0006402: mRNA catabolic process	8.39E-03
98	GO:0010439: regulation of glucosinolate biosynthetic process	8.39E-03
99	GO:0009690: cytokinin metabolic process	8.39E-03
100	GO:0006605: protein targeting	8.39E-03
101	GO:0009704: de-etiolation	8.39E-03
102	GO:0000105: histidine biosynthetic process	8.39E-03
103	GO:0009742: brassinosteroid mediated signaling pathway	9.16E-03
104	GO:0010099: regulation of photomorphogenesis	9.63E-03
105	GO:0015996: chlorophyll catabolic process	9.63E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	9.63E-03
107	GO:0009097: isoleucine biosynthetic process	9.63E-03
108	GO:0010100: negative regulation of photomorphogenesis	9.63E-03
109	GO:0051865: protein autoubiquitination	1.09E-02
110	GO:0010206: photosystem II repair	1.09E-02
111	GO:0006783: heme biosynthetic process	1.09E-02
112	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.12E-02
113	GO:0009638: phototropism	1.23E-02
114	GO:0009098: leucine biosynthetic process	1.23E-02
115	GO:1900865: chloroplast RNA modification	1.23E-02
116	GO:0031425: chloroplast RNA processing	1.23E-02
117	GO:0016441: posttranscriptional gene silencing	1.37E-02
118	GO:0010162: seed dormancy process	1.37E-02
119	GO:0009299: mRNA transcription	1.37E-02
120	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.37E-02
121	GO:0000103: sulfate assimilation	1.37E-02
122	GO:0048829: root cap development	1.37E-02
123	GO:0045892: negative regulation of transcription, DNA-templated	1.43E-02
124	GO:0010015: root morphogenesis	1.52E-02
125	GO:0000038: very long-chain fatty acid metabolic process	1.52E-02
126	GO:0009682: induced systemic resistance	1.52E-02
127	GO:0009073: aromatic amino acid family biosynthetic process	1.52E-02
128	GO:0048229: gametophyte development	1.52E-02
129	GO:0009867: jasmonic acid mediated signaling pathway	1.61E-02
130	GO:0045037: protein import into chloroplast stroma	1.68E-02
131	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.68E-02
132	GO:0009725: response to hormone	1.84E-02
133	GO:0010588: cotyledon vascular tissue pattern formation	1.84E-02
134	GO:0006006: glucose metabolic process	1.84E-02
135	GO:2000028: regulation of photoperiodism, flowering	1.84E-02
136	GO:0010075: regulation of meristem growth	1.84E-02
137	GO:0006631: fatty acid metabolic process	1.92E-02
138	GO:0009934: regulation of meristem structural organization	2.00E-02
139	GO:0010207: photosystem II assembly	2.00E-02
140	GO:0009640: photomorphogenesis	2.08E-02
141	GO:0009926: auxin polar transport	2.08E-02
142	GO:0090351: seedling development	2.17E-02
143	GO:0006071: glycerol metabolic process	2.35E-02
144	GO:0019762: glucosinolate catabolic process	2.35E-02
145	GO:0000162: tryptophan biosynthetic process	2.35E-02
146	GO:0019344: cysteine biosynthetic process	2.53E-02
147	GO:0080147: root hair cell development	2.53E-02
148	GO:0010187: negative regulation of seed germination	2.53E-02
149	GO:0005992: trehalose biosynthetic process	2.53E-02
150	GO:0019953: sexual reproduction	2.71E-02
151	GO:0009826: unidimensional cell growth	2.82E-02
152	GO:0048511: rhythmic process	2.90E-02
153	GO:0010431: seed maturation	2.90E-02
154	GO:0061077: chaperone-mediated protein folding	2.90E-02
155	GO:0048278: vesicle docking	2.90E-02
156	GO:0016114: terpenoid biosynthetic process	2.90E-02
157	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.09E-02
158	GO:0006730: one-carbon metabolic process	3.09E-02
159	GO:0031348: negative regulation of defense response	3.09E-02
160	GO:0009693: ethylene biosynthetic process	3.29E-02
161	GO:0071215: cellular response to abscisic acid stimulus	3.29E-02
162	GO:0010082: regulation of root meristem growth	3.29E-02
163	GO:0009625: response to insect	3.29E-02
164	GO:0006284: base-excision repair	3.49E-02
165	GO:0010091: trichome branching	3.49E-02
166	GO:0048366: leaf development	3.62E-02
167	GO:0006355: regulation of transcription, DNA-templated	3.68E-02
168	GO:0009740: gibberellic acid mediated signaling pathway	3.76E-02
169	GO:0010118: stomatal movement	3.91E-02
170	GO:0048653: anther development	3.91E-02
171	GO:0042335: cuticle development	3.91E-02
172	GO:0080022: primary root development	3.91E-02
173	GO:0010087: phloem or xylem histogenesis	3.91E-02
174	GO:0010268: brassinosteroid homeostasis	4.12E-02
175	GO:0009960: endosperm development	4.12E-02
176	GO:0010305: leaf vascular tissue pattern formation	4.12E-02
177	GO:0006662: glycerol ether metabolic process	4.12E-02
178	GO:0010197: polar nucleus fusion	4.12E-02
179	GO:0048868: pollen tube development	4.12E-02
180	GO:0009646: response to absence of light	4.34E-02
181	GO:0048544: recognition of pollen	4.34E-02
182	GO:0061025: membrane fusion	4.34E-02
183	GO:0042752: regulation of circadian rhythm	4.34E-02
184	GO:0048825: cotyledon development	4.56E-02
185	GO:0071554: cell wall organization or biogenesis	4.78E-02
186	GO:0016132: brassinosteroid biosynthetic process	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0000170: sphingosine hydroxylase activity	4.64E-04
8	GO:0050139: nicotinate-N-glucosyltransferase activity	4.64E-04
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.64E-04
10	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.64E-04
11	GO:0004134: 4-alpha-glucanotransferase activity	4.64E-04
12	GO:0010313: phytochrome binding	4.64E-04
13	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	4.64E-04
14	GO:0042736: NADH kinase activity	4.64E-04
15	GO:0010012: steroid 22-alpha hydroxylase activity	4.64E-04
16	GO:0043425: bHLH transcription factor binding	1.00E-03
17	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	1.00E-03
18	GO:0042284: sphingolipid delta-4 desaturase activity	1.00E-03
19	GO:0009973: adenylyl-sulfate reductase activity	1.00E-03
20	GO:0008493: tetracycline transporter activity	1.00E-03
21	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	1.00E-03
22	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.00E-03
23	GO:0016298: lipase activity	1.05E-03
24	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.63E-03
25	GO:0003913: DNA photolyase activity	1.63E-03
26	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.63E-03
27	GO:0015238: drug transmembrane transporter activity	2.10E-03
28	GO:0052655: L-valine transaminase activity	2.37E-03
29	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.37E-03
30	GO:0052656: L-isoleucine transaminase activity	2.37E-03
31	GO:0052654: L-leucine transaminase activity	2.37E-03
32	GO:0019104: DNA N-glycosylase activity	3.18E-03
33	GO:0004084: branched-chain-amino-acid transaminase activity	3.18E-03
34	GO:0019199: transmembrane receptor protein kinase activity	3.18E-03
35	GO:0046556: alpha-L-arabinofuranosidase activity	3.18E-03
36	GO:0004659: prenyltransferase activity	3.18E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	3.18E-03
38	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.08E-03
39	GO:0080030: methyl indole-3-acetate esterase activity	5.05E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.05E-03
41	GO:0004709: MAP kinase kinase kinase activity	5.05E-03
42	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	5.05E-03
43	GO:0016832: aldehyde-lyase activity	6.09E-03
44	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.60E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	7.91E-03
46	GO:0005200: structural constituent of cytoskeleton	8.60E-03
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.61E-03
48	GO:0003951: NAD+ kinase activity	9.63E-03
49	GO:0008173: RNA methyltransferase activity	9.63E-03
50	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.09E-02
51	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.09E-02
52	GO:0102483: scopolin beta-glucosidase activity	1.14E-02
53	GO:0052689: carboxylic ester hydrolase activity	1.24E-02
54	GO:0015020: glucuronosyltransferase activity	1.37E-02
55	GO:0004805: trehalose-phosphatase activity	1.37E-02
56	GO:0030234: enzyme regulator activity	1.37E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.47E-02
58	GO:0004871: signal transducer activity	1.50E-02
59	GO:0044183: protein binding involved in protein folding	1.52E-02
60	GO:0015297: antiporter activity	1.61E-02
61	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.68E-02
62	GO:0008422: beta-glucosidase activity	1.76E-02
63	GO:0004089: carbonate dehydratase activity	1.84E-02
64	GO:0008146: sulfotransferase activity	2.17E-02
65	GO:0003712: transcription cofactor activity	2.17E-02
66	GO:0005215: transporter activity	2.25E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.35E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.35E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.35E-02
70	GO:0031418: L-ascorbic acid binding	2.53E-02
71	GO:0005528: FK506 binding	2.53E-02
72	GO:0005345: purine nucleobase transmembrane transporter activity	2.71E-02
73	GO:0010333: terpene synthase activity	2.90E-02
74	GO:0004176: ATP-dependent peptidase activity	2.90E-02
75	GO:0033612: receptor serine/threonine kinase binding	2.90E-02
76	GO:0003964: RNA-directed DNA polymerase activity	2.90E-02
77	GO:0008289: lipid binding	3.13E-02
78	GO:0008514: organic anion transmembrane transporter activity	3.49E-02
79	GO:0003727: single-stranded RNA binding	3.49E-02
80	GO:0047134: protein-disulfide reductase activity	3.70E-02
81	GO:0016874: ligase activity	3.76E-02
82	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.12E-02
83	GO:0005199: structural constituent of cell wall	4.12E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	4.34E-02
85	GO:0003677: DNA binding	4.39E-02
86	GO:0019901: protein kinase binding	4.56E-02
87	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.81E-02
88	GO:0044212: transcription regulatory region DNA binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.00E-03
2	GO:0009528: plastid inner membrane	1.63E-03
3	GO:0030139: endocytic vesicle	1.63E-03
4	GO:0009534: chloroplast thylakoid	2.18E-03
5	GO:0032585: multivesicular body membrane	2.37E-03
6	GO:0009527: plastid outer membrane	3.18E-03
7	GO:0009986: cell surface	7.20E-03
8	GO:0009501: amyloplast	8.39E-03
9	GO:0010494: cytoplasmic stress granule	1.09E-02
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.09E-02
11	GO:0042644: chloroplast nucleoid	1.09E-02
12	GO:0009543: chloroplast thylakoid lumen	1.13E-02
13	GO:0005578: proteinaceous extracellular matrix	1.84E-02
14	GO:0009508: plastid chromosome	1.84E-02
15	GO:0031977: thylakoid lumen	1.92E-02
16	GO:0030095: chloroplast photosystem II	2.00E-02
17	GO:0009570: chloroplast stroma	2.08E-02
18	GO:0009654: photosystem II oxygen evolving complex	2.71E-02
19	GO:0009532: plastid stroma	2.90E-02
20	GO:0015629: actin cytoskeleton	3.29E-02
21	GO:0010008: endosome membrane	3.42E-02
22	GO:0031969: chloroplast membrane	3.86E-02
23	GO:0012505: endomembrane system	3.87E-02
24	GO:0005770: late endosome	4.12E-02
25	GO:0016021: integral component of membrane	4.35E-02
26	GO:0009504: cell plate	4.56E-02
27	GO:0019898: extrinsic component of membrane	4.56E-02