co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G80640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071474: cellular hyperosmotic response	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
9	GO:1901259: chloroplast rRNA processing	2.31E-06
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.18E-06
11	GO:0006021: inositol biosynthetic process	4.69E-05
12	GO:0015995: chlorophyll biosynthetic process	5.47E-05
13	GO:0015979: photosynthesis	1.51E-04
14	GO:0006659: phosphatidylserine biosynthetic process	2.63E-04
15	GO:1904964: positive regulation of phytol biosynthetic process	2.63E-04
16	GO:0042371: vitamin K biosynthetic process	2.63E-04
17	GO:0071461: cellular response to redox state	2.63E-04
18	GO:0034337: RNA folding	2.63E-04
19	GO:0000476: maturation of 4.5S rRNA	2.63E-04
20	GO:0009443: pyridoxal 5'-phosphate salvage	2.63E-04
21	GO:0000967: rRNA 5'-end processing	2.63E-04
22	GO:0046467: membrane lipid biosynthetic process	2.63E-04
23	GO:0015671: oxygen transport	2.63E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.63E-04
25	GO:0019544: arginine catabolic process to glutamate	2.63E-04
26	GO:0019252: starch biosynthetic process	2.75E-04
27	GO:0009657: plastid organization	3.06E-04
28	GO:0032502: developmental process	3.29E-04
29	GO:0005982: starch metabolic process	4.38E-04
30	GO:1904143: positive regulation of carotenoid biosynthetic process	5.78E-04
31	GO:0051262: protein tetramerization	5.78E-04
32	GO:0034470: ncRNA processing	5.78E-04
33	GO:0051645: Golgi localization	5.78E-04
34	GO:0080005: photosystem stoichiometry adjustment	5.78E-04
35	GO:0010541: acropetal auxin transport	5.78E-04
36	GO:0060151: peroxisome localization	5.78E-04
37	GO:0000256: allantoin catabolic process	5.78E-04
38	GO:0071457: cellular response to ozone	5.78E-04
39	GO:0019684: photosynthesis, light reaction	5.92E-04
40	GO:0009773: photosynthetic electron transport in photosystem I	5.92E-04
41	GO:0009767: photosynthetic electron transport chain	7.67E-04
42	GO:0030048: actin filament-based movement	7.67E-04
43	GO:0048467: gynoecium development	8.62E-04
44	GO:0010207: photosystem II assembly	8.62E-04
45	GO:0015940: pantothenate biosynthetic process	9.39E-04
46	GO:0005977: glycogen metabolic process	9.39E-04
47	GO:0006954: inflammatory response	9.39E-04
48	GO:0090391: granum assembly	9.39E-04
49	GO:0010136: ureide catabolic process	9.39E-04
50	GO:0051646: mitochondrion localization	9.39E-04
51	GO:0010160: formation of animal organ boundary	9.39E-04
52	GO:0090436: leaf pavement cell development	9.39E-04
53	GO:0055114: oxidation-reduction process	1.18E-03
54	GO:0007017: microtubule-based process	1.30E-03
55	GO:2001141: regulation of RNA biosynthetic process	1.34E-03
56	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.34E-03
57	GO:0071484: cellular response to light intensity	1.34E-03
58	GO:0009152: purine ribonucleotide biosynthetic process	1.34E-03
59	GO:0046653: tetrahydrofolate metabolic process	1.34E-03
60	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.34E-03
61	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.34E-03
62	GO:0006145: purine nucleobase catabolic process	1.34E-03
63	GO:0010731: protein glutathionylation	1.34E-03
64	GO:0071786: endoplasmic reticulum tubular network organization	1.34E-03
65	GO:0010021: amylopectin biosynthetic process	1.79E-03
66	GO:0010037: response to carbon dioxide	1.79E-03
67	GO:0015976: carbon utilization	1.79E-03
68	GO:0071486: cellular response to high light intensity	1.79E-03
69	GO:0009765: photosynthesis, light harvesting	1.79E-03
70	GO:0015994: chlorophyll metabolic process	1.79E-03
71	GO:2000122: negative regulation of stomatal complex development	1.79E-03
72	GO:0006546: glycine catabolic process	1.79E-03
73	GO:0009658: chloroplast organization	2.10E-03
74	GO:0006465: signal peptide processing	2.29E-03
75	GO:0071493: cellular response to UV-B	2.29E-03
76	GO:0006564: L-serine biosynthetic process	2.29E-03
77	GO:0009958: positive gravitropism	2.32E-03
78	GO:0009791: post-embryonic development	2.68E-03
79	GO:0050665: hydrogen peroxide biosynthetic process	2.82E-03
80	GO:0042549: photosystem II stabilization	2.82E-03
81	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.82E-03
82	GO:0060918: auxin transport	2.82E-03
83	GO:0010190: cytochrome b6f complex assembly	2.82E-03
84	GO:0046855: inositol phosphate dephosphorylation	2.82E-03
85	GO:0080167: response to karrikin	2.92E-03
86	GO:0009854: oxidative photosynthetic carbon pathway	3.40E-03
87	GO:0010019: chloroplast-nucleus signaling pathway	3.40E-03
88	GO:0071333: cellular response to glucose stimulus	3.40E-03
89	GO:0009955: adaxial/abaxial pattern specification	3.40E-03
90	GO:0048280: vesicle fusion with Golgi apparatus	3.40E-03
91	GO:0009772: photosynthetic electron transport in photosystem II	4.00E-03
92	GO:1900056: negative regulation of leaf senescence	4.00E-03
93	GO:0009645: response to low light intensity stimulus	4.00E-03
94	GO:0009769: photosynthesis, light harvesting in photosystem II	4.00E-03
95	GO:0052543: callose deposition in cell wall	4.65E-03
96	GO:0016559: peroxisome fission	4.65E-03
97	GO:0007155: cell adhesion	4.65E-03
98	GO:0042255: ribosome assembly	4.65E-03
99	GO:0006353: DNA-templated transcription, termination	4.65E-03
100	GO:0010078: maintenance of root meristem identity	4.65E-03
101	GO:0043562: cellular response to nitrogen levels	5.32E-03
102	GO:0017004: cytochrome complex assembly	5.32E-03
103	GO:0071482: cellular response to light stimulus	5.32E-03
104	GO:0019430: removal of superoxide radicals	5.32E-03
105	GO:0010204: defense response signaling pathway, resistance gene-independent	5.32E-03
106	GO:0032544: plastid translation	5.32E-03
107	GO:0018298: protein-chromophore linkage	5.39E-03
108	GO:0010218: response to far red light	5.95E-03
109	GO:0019432: triglyceride biosynthetic process	6.03E-03
110	GO:0048527: lateral root development	6.23E-03
111	GO:0009409: response to cold	6.39E-03
112	GO:0006779: porphyrin-containing compound biosynthetic process	6.77E-03
113	GO:0010380: regulation of chlorophyll biosynthetic process	6.77E-03
114	GO:0009637: response to blue light	6.83E-03
115	GO:0009853: photorespiration	6.83E-03
116	GO:0006810: transport	7.49E-03
117	GO:0045036: protein targeting to chloroplast	7.54E-03
118	GO:0006896: Golgi to vacuole transport	7.54E-03
119	GO:0006782: protoporphyrinogen IX biosynthetic process	7.54E-03
120	GO:0005975: carbohydrate metabolic process	7.99E-03
121	GO:0009684: indoleacetic acid biosynthetic process	8.35E-03
122	GO:0009089: lysine biosynthetic process via diaminopimelate	8.35E-03
123	GO:0043085: positive regulation of catalytic activity	8.35E-03
124	GO:0006352: DNA-templated transcription, initiation	8.35E-03
125	GO:0010114: response to red light	8.82E-03
126	GO:0008361: regulation of cell size	9.17E-03
127	GO:0006790: sulfur compound metabolic process	9.17E-03
128	GO:0016024: CDP-diacylglycerol biosynthetic process	9.17E-03
129	GO:0010588: cotyledon vascular tissue pattern formation	1.00E-02
130	GO:0010540: basipetal auxin transport	1.09E-02
131	GO:0010143: cutin biosynthetic process	1.09E-02
132	GO:0010020: chloroplast fission	1.09E-02
133	GO:0046854: phosphatidylinositol phosphorylation	1.18E-02
134	GO:0019853: L-ascorbic acid biosynthetic process	1.18E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	1.23E-02
136	GO:0009416: response to light stimulus	1.26E-02
137	GO:0006636: unsaturated fatty acid biosynthetic process	1.28E-02
138	GO:0048367: shoot system development	1.46E-02
139	GO:0006418: tRNA aminoacylation for protein translation	1.48E-02
140	GO:0009768: photosynthesis, light harvesting in photosystem I	1.48E-02
141	GO:0019915: lipid storage	1.58E-02
142	GO:0009269: response to desiccation	1.58E-02
143	GO:0019748: secondary metabolic process	1.68E-02
144	GO:0030245: cellulose catabolic process	1.68E-02
145	GO:0016226: iron-sulfur cluster assembly	1.68E-02
146	GO:0030433: ubiquitin-dependent ERAD pathway	1.68E-02
147	GO:0071215: cellular response to abscisic acid stimulus	1.79E-02
148	GO:0009686: gibberellin biosynthetic process	1.79E-02
149	GO:0009742: brassinosteroid mediated signaling pathway	1.80E-02
150	GO:0009306: protein secretion	1.90E-02
151	GO:0048443: stamen development	1.90E-02
152	GO:0016117: carotenoid biosynthetic process	2.01E-02
153	GO:0042147: retrograde transport, endosome to Golgi	2.01E-02
154	GO:0010087: phloem or xylem histogenesis	2.13E-02
155	GO:0010118: stomatal movement	2.13E-02
156	GO:0080022: primary root development	2.13E-02
157	GO:0009741: response to brassinosteroid	2.24E-02
158	GO:0010268: brassinosteroid homeostasis	2.24E-02
159	GO:0006520: cellular amino acid metabolic process	2.24E-02
160	GO:0071472: cellular response to salt stress	2.24E-02
161	GO:0010154: fruit development	2.24E-02
162	GO:0015986: ATP synthesis coupled proton transport	2.36E-02
163	GO:0009646: response to absence of light	2.36E-02
164	GO:0008654: phospholipid biosynthetic process	2.48E-02
165	GO:0009851: auxin biosynthetic process	2.48E-02
166	GO:0006623: protein targeting to vacuole	2.48E-02
167	GO:0048825: cotyledon development	2.48E-02
168	GO:0016132: brassinosteroid biosynthetic process	2.61E-02
169	GO:0071554: cell wall organization or biogenesis	2.61E-02
170	GO:0006891: intra-Golgi vesicle-mediated transport	2.61E-02
171	GO:1901657: glycosyl compound metabolic process	2.86E-02
172	GO:0010090: trichome morphogenesis	2.86E-02
173	GO:0016125: sterol metabolic process	2.99E-02
174	GO:0009639: response to red or far red light	2.99E-02
175	GO:0008380: RNA splicing	3.51E-02
176	GO:0042128: nitrate assimilation	3.66E-02
177	GO:0006888: ER to Golgi vesicle-mediated transport	3.80E-02
178	GO:0016311: dephosphorylation	3.95E-02
179	GO:0016049: cell growth	3.95E-02
180	GO:0009735: response to cytokinin	3.96E-02
181	GO:0048481: plant ovule development	4.09E-02
182	GO:0009817: defense response to fungus, incompatible interaction	4.09E-02
183	GO:0009813: flavonoid biosynthetic process	4.24E-02
184	GO:0009910: negative regulation of flower development	4.53E-02
185	GO:0010119: regulation of stomatal movement	4.53E-02
186	GO:0034599: cellular response to oxidative stress	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
11	GO:0042802: identical protein binding	3.95E-05
12	GO:0009011: starch synthase activity	4.69E-05
13	GO:0019843: rRNA binding	9.43E-05
14	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.49E-04
15	GO:0019899: enzyme binding	1.96E-04
16	GO:0004328: formamidase activity	2.63E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.63E-04
18	GO:0005344: oxygen transporter activity	2.63E-04
19	GO:0046906: tetrapyrrole binding	2.63E-04
20	GO:0005227: calcium activated cation channel activity	2.63E-04
21	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.63E-04
22	GO:0051777: ent-kaurenoate oxidase activity	2.63E-04
23	GO:0004856: xylulokinase activity	2.63E-04
24	GO:0047746: chlorophyllase activity	5.78E-04
25	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.78E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	5.78E-04
27	GO:0004047: aminomethyltransferase activity	5.78E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	5.78E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	5.78E-04
30	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.78E-04
31	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.78E-04
32	GO:0008934: inositol monophosphate 1-phosphatase activity	5.78E-04
33	GO:0052833: inositol monophosphate 4-phosphatase activity	5.78E-04
34	GO:0019156: isoamylase activity	5.78E-04
35	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.78E-04
36	GO:0004512: inositol-3-phosphate synthase activity	5.78E-04
37	GO:0003774: motor activity	8.62E-04
38	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.39E-04
39	GO:0070402: NADPH binding	9.39E-04
40	GO:0008864: formyltetrahydrofolate deformylase activity	9.39E-04
41	GO:0004373: glycogen (starch) synthase activity	9.39E-04
42	GO:0002161: aminoacyl-tRNA editing activity	9.39E-04
43	GO:0004848: ureidoglycolate hydrolase activity	9.39E-04
44	GO:0004751: ribose-5-phosphate isomerase activity	9.39E-04
45	GO:0004185: serine-type carboxypeptidase activity	1.26E-03
46	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.34E-03
47	GO:0001872: (1->3)-beta-D-glucan binding	1.34E-03
48	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.34E-03
49	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.34E-03
50	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.34E-03
51	GO:0016851: magnesium chelatase activity	1.34E-03
52	GO:0008891: glycolate oxidase activity	1.79E-03
53	GO:0001053: plastid sigma factor activity	1.79E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.79E-03
55	GO:0008453: alanine-glyoxylate transaminase activity	1.79E-03
56	GO:0004045: aminoacyl-tRNA hydrolase activity	1.79E-03
57	GO:0016987: sigma factor activity	1.79E-03
58	GO:0045430: chalcone isomerase activity	1.79E-03
59	GO:0043495: protein anchor	1.79E-03
60	GO:0003727: single-stranded RNA binding	1.84E-03
61	GO:0016491: oxidoreductase activity	1.90E-03
62	GO:0016846: carbon-sulfur lyase activity	2.29E-03
63	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.29E-03
64	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.82E-03
65	GO:2001070: starch binding	2.82E-03
66	GO:0004556: alpha-amylase activity	2.82E-03
67	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.82E-03
68	GO:0004784: superoxide dismutase activity	2.82E-03
69	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.40E-03
70	GO:0005261: cation channel activity	3.40E-03
71	GO:0005200: structural constituent of cytoskeleton	3.68E-03
72	GO:0016168: chlorophyll binding	4.37E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	4.65E-03
74	GO:0003924: GTPase activity	5.28E-03
75	GO:0005525: GTP binding	8.06E-03
76	GO:0047372: acylglycerol lipase activity	8.35E-03
77	GO:0008378: galactosyltransferase activity	9.17E-03
78	GO:0000049: tRNA binding	9.17E-03
79	GO:0004089: carbonate dehydratase activity	1.00E-02
80	GO:0004565: beta-galactosidase activity	1.00E-02
81	GO:0010329: auxin efflux transmembrane transporter activity	1.00E-02
82	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.09E-02
83	GO:0008266: poly(U) RNA binding	1.09E-02
84	GO:0003690: double-stranded DNA binding	1.23E-02
85	GO:0031409: pigment binding	1.28E-02
86	GO:0051536: iron-sulfur cluster binding	1.38E-02
87	GO:0005528: FK506 binding	1.38E-02
88	GO:0022891: substrate-specific transmembrane transporter activity	1.79E-02
89	GO:0008810: cellulase activity	1.79E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.91E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	2.01E-02
92	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.24E-02
93	GO:0010181: FMN binding	2.36E-02
94	GO:0008565: protein transporter activity	2.55E-02
95	GO:0048038: quinone binding	2.61E-02
96	GO:0016791: phosphatase activity	2.99E-02
97	GO:0008483: transaminase activity	3.12E-02
98	GO:0008237: metallopeptidase activity	3.12E-02
99	GO:0016413: O-acetyltransferase activity	3.25E-02
100	GO:0016597: amino acid binding	3.25E-02
101	GO:0102483: scopolin beta-glucosidase activity	3.80E-02
102	GO:0030247: polysaccharide binding	3.80E-02
103	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.09E-02
104	GO:0003824: catalytic activity	4.11E-02
105	GO:0016787: hydrolase activity	4.17E-02
106	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.53E-02
107	GO:0004601: peroxidase activity	4.54E-02
108	GO:0003993: acid phosphatase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	8.91E-28
3	GO:0009535: chloroplast thylakoid membrane	5.68E-11
4	GO:0009570: chloroplast stroma	8.50E-10
5	GO:0009534: chloroplast thylakoid	1.09E-08
6	GO:0009941: chloroplast envelope	3.55E-06
7	GO:0009543: chloroplast thylakoid lumen	8.40E-06
8	GO:0009654: photosystem II oxygen evolving complex	9.59E-05
9	GO:0005787: signal peptidase complex	2.63E-04
10	GO:0009547: plastid ribosome	2.63E-04
11	GO:0009523: photosystem II	2.75E-04
12	GO:0009579: thylakoid	3.18E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.70E-04
14	GO:0016459: myosin complex	5.12E-04
15	GO:0043036: starch grain	5.78E-04
16	GO:0031969: chloroplast membrane	6.24E-04
17	GO:0030095: chloroplast photosystem II	8.62E-04
18	GO:0033281: TAT protein transport complex	9.39E-04
19	GO:0010007: magnesium chelatase complex	9.39E-04
20	GO:0031977: thylakoid lumen	1.14E-03
21	GO:0015630: microtubule cytoskeleton	1.34E-03
22	GO:0030658: transport vesicle membrane	1.34E-03
23	GO:0071782: endoplasmic reticulum tubular network	1.34E-03
24	GO:0009517: PSII associated light-harvesting complex II	1.79E-03
25	GO:0009522: photosystem I	2.50E-03
26	GO:0019898: extrinsic component of membrane	2.68E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.82E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	4.65E-03
29	GO:0009501: amyloplast	4.65E-03
30	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.65E-03
31	GO:0009539: photosystem II reaction center	5.32E-03
32	GO:0009707: chloroplast outer membrane	5.39E-03
33	GO:0005763: mitochondrial small ribosomal subunit	6.03E-03
34	GO:0045298: tubulin complex	6.03E-03
35	GO:0005789: endoplasmic reticulum membrane	8.09E-03
36	GO:0000311: plastid large ribosomal subunit	9.17E-03
37	GO:0032040: small-subunit processome	9.17E-03
38	GO:0009508: plastid chromosome	1.00E-02
39	GO:0030076: light-harvesting complex	1.18E-02
40	GO:0005840: ribosome	1.25E-02
41	GO:0042651: thylakoid membrane	1.48E-02
42	GO:0005777: peroxisome	1.55E-02
43	GO:0010287: plastoglobule	2.02E-02
44	GO:0005623: cell	2.19E-02
45	GO:0010319: stromule	3.12E-02
46	GO:0009295: nucleoid	3.12E-02
47	GO:0030529: intracellular ribonucleoprotein complex	3.39E-02
48	GO:0005773: vacuole	3.66E-02
49	GO:0005618: cell wall	4.85E-02