co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G80380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0015717: triose phosphate transport	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	1.13E-10
4	GO:0015995: chlorophyll biosynthetic process	3.18E-06
5	GO:1901259: chloroplast rRNA processing	3.05E-05
6	GO:0009772: photosynthetic electron transport in photosystem II	4.14E-05
7	GO:0015979: photosynthesis	5.02E-05
8	GO:0032544: plastid translation	6.86E-05
9	GO:0010206: photosystem II repair	8.49E-05
10	GO:0010028: xanthophyll cycle	9.69E-05
11	GO:0034337: RNA folding	9.69E-05
12	GO:0005980: glycogen catabolic process	9.69E-05
13	GO:0006094: gluconeogenesis	1.93E-04
14	GO:0010207: photosystem II assembly	2.19E-04
15	GO:0010353: response to trehalose	2.28E-04
16	GO:0016122: xanthophyll metabolic process	2.28E-04
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-04
18	GO:0009735: response to cytokinin	2.35E-04
19	GO:0006636: unsaturated fatty acid biosynthetic process	2.77E-04
20	GO:0009768: photosynthesis, light harvesting in photosystem I	3.41E-04
21	GO:0006000: fructose metabolic process	3.80E-04
22	GO:0009405: pathogenesis	3.80E-04
23	GO:0090391: granum assembly	3.80E-04
24	GO:0006518: peptide metabolic process	3.80E-04
25	GO:0035436: triose phosphate transmembrane transport	3.80E-04
26	GO:0006810: transport	4.60E-04
27	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.46E-04
28	GO:0006020: inositol metabolic process	5.46E-04
29	GO:0071484: cellular response to light intensity	5.46E-04
30	GO:0045727: positive regulation of translation	7.26E-04
31	GO:0015994: chlorophyll metabolic process	7.26E-04
32	GO:0015713: phosphoglycerate transport	7.26E-04
33	GO:0006021: inositol biosynthetic process	7.26E-04
34	GO:0006461: protein complex assembly	9.17E-04
35	GO:0010027: thylakoid membrane organization	1.06E-03
36	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.12E-03
37	GO:0046855: inositol phosphate dephosphorylation	1.12E-03
38	GO:1902456: regulation of stomatal opening	1.12E-03
39	GO:0010190: cytochrome b6f complex assembly	1.12E-03
40	GO:0009643: photosynthetic acclimation	1.12E-03
41	GO:0009955: adaxial/abaxial pattern specification	1.34E-03
42	GO:0009610: response to symbiotic fungus	1.57E-03
43	GO:0010196: nonphotochemical quenching	1.57E-03
44	GO:0009631: cold acclimation	1.57E-03
45	GO:0009642: response to light intensity	1.81E-03
46	GO:0006002: fructose 6-phosphate metabolic process	2.07E-03
47	GO:0009657: plastid organization	2.07E-03
48	GO:0046686: response to cadmium ion	2.14E-03
49	GO:0006098: pentose-phosphate shunt	2.33E-03
50	GO:0006783: heme biosynthetic process	2.33E-03
51	GO:0006754: ATP biosynthetic process	2.33E-03
52	GO:0010205: photoinhibition	2.61E-03
53	GO:0009641: shade avoidance	2.90E-03
54	GO:0006782: protoporphyrinogen IX biosynthetic process	2.90E-03
55	GO:0018119: peptidyl-cysteine S-nitrosylation	3.20E-03
56	GO:0043085: positive regulation of catalytic activity	3.20E-03
57	GO:0000272: polysaccharide catabolic process	3.20E-03
58	GO:0006790: sulfur compound metabolic process	3.50E-03
59	GO:0005983: starch catabolic process	3.50E-03
60	GO:0005986: sucrose biosynthetic process	3.82E-03
61	GO:0010223: secondary shoot formation	4.15E-03
62	GO:0009266: response to temperature stimulus	4.15E-03
63	GO:0019253: reductive pentose-phosphate cycle	4.15E-03
64	GO:0046854: phosphatidylinositol phosphorylation	4.49E-03
65	GO:0005985: sucrose metabolic process	4.49E-03
66	GO:0051017: actin filament bundle assembly	5.19E-03
67	GO:0006412: translation	5.61E-03
68	GO:0061077: chaperone-mediated protein folding	5.93E-03
69	GO:0016114: terpenoid biosynthetic process	5.93E-03
70	GO:0035428: hexose transmembrane transport	6.31E-03
71	GO:0016226: iron-sulfur cluster assembly	6.31E-03
72	GO:0006633: fatty acid biosynthetic process	6.59E-03
73	GO:0009306: protein secretion	7.10E-03
74	GO:0070417: cellular response to cold	7.51E-03
75	GO:0042631: cellular response to water deprivation	7.93E-03
76	GO:0046323: glucose import	8.35E-03
77	GO:0006662: glycerol ether metabolic process	8.35E-03
78	GO:0015986: ATP synthesis coupled proton transport	8.79E-03
79	GO:0042254: ribosome biogenesis	1.14E-02
80	GO:0016311: dephosphorylation	1.46E-02
81	GO:0018298: protein-chromophore linkage	1.51E-02
82	GO:0010218: response to far red light	1.62E-02
83	GO:0009637: response to blue light	1.79E-02
84	GO:0034599: cellular response to oxidative stress	1.85E-02
85	GO:0006631: fatty acid metabolic process	2.02E-02
86	GO:0006629: lipid metabolic process	2.06E-02
87	GO:0009408: response to heat	2.06E-02
88	GO:0010114: response to red light	2.14E-02
89	GO:0006364: rRNA processing	2.65E-02
90	GO:0051603: proteolysis involved in cellular protein catabolic process	2.72E-02
91	GO:0009409: response to cold	2.73E-02
92	GO:0006096: glycolytic process	2.99E-02
93	GO:0048367: shoot system development	3.05E-02
94	GO:0055114: oxidation-reduction process	3.22E-02
95	GO:0009742: brassinosteroid mediated signaling pathway	3.55E-02
96	GO:0045893: positive regulation of transcription, DNA-templated	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0019843: rRNA binding	3.44E-09
5	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	9.69E-05
6	GO:0050521: alpha-glucan, water dikinase activity	9.69E-05
7	GO:0008184: glycogen phosphorylase activity	9.69E-05
8	GO:0004853: uroporphyrinogen decarboxylase activity	9.69E-05
9	GO:0045485: omega-6 fatty acid desaturase activity	9.69E-05
10	GO:0004645: phosphorylase activity	9.69E-05
11	GO:0042389: omega-3 fatty acid desaturase activity	2.28E-04
12	GO:0010297: heteropolysaccharide binding	2.28E-04
13	GO:0052832: inositol monophosphate 3-phosphatase activity	2.28E-04
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	2.28E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	2.28E-04
17	GO:0008967: phosphoglycolate phosphatase activity	2.28E-04
18	GO:0018708: thiol S-methyltransferase activity	2.28E-04
19	GO:0031409: pigment binding	2.77E-04
20	GO:0005528: FK506 binding	3.08E-04
21	GO:0071917: triose-phosphate transmembrane transporter activity	3.80E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.80E-04
23	GO:0090729: toxin activity	3.80E-04
24	GO:0019201: nucleotide kinase activity	5.46E-04
25	GO:0016851: magnesium chelatase activity	5.46E-04
26	GO:0015120: phosphoglycerate transmembrane transporter activity	7.26E-04
27	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.26E-04
28	GO:0003735: structural constituent of ribosome	8.44E-04
29	GO:0004332: fructose-bisphosphate aldolase activity	1.12E-03
30	GO:0016168: chlorophyll binding	1.12E-03
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.34E-03
32	GO:0004017: adenylate kinase activity	1.34E-03
33	GO:0004033: aldo-keto reductase (NADP) activity	1.81E-03
34	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.07E-03
35	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-03
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.57E-03
37	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.61E-03
38	GO:0030234: enzyme regulator activity	2.90E-03
39	GO:0008047: enzyme activator activity	2.90E-03
40	GO:0047372: acylglycerol lipase activity	3.20E-03
41	GO:0031072: heat shock protein binding	3.82E-03
42	GO:0051536: iron-sulfur cluster binding	5.19E-03
43	GO:0047134: protein-disulfide reductase activity	7.51E-03
44	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.35E-03
45	GO:0004791: thioredoxin-disulfide reductase activity	8.79E-03
46	GO:0005355: glucose transmembrane transporter activity	8.79E-03
47	GO:0050662: coenzyme binding	8.79E-03
48	GO:0048038: quinone binding	9.68E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.06E-02
50	GO:0051015: actin filament binding	1.06E-02
51	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.51E-02
52	GO:0004222: metalloendopeptidase activity	1.62E-02
53	GO:0003746: translation elongation factor activity	1.79E-02
54	GO:0003993: acid phosphatase activity	1.85E-02
55	GO:0004185: serine-type carboxypeptidase activity	2.14E-02
56	GO:0016491: oxidoreductase activity	2.63E-02
57	GO:0051082: unfolded protein binding	3.41E-02
58	GO:0015035: protein disulfide oxidoreductase activity	3.48E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.07E-02
60	GO:0030170: pyridoxal phosphate binding	4.30E-02
61	GO:0015144: carbohydrate transmembrane transporter activity	4.54E-02
62	GO:0016787: hydrolase activity	4.79E-02
63	GO:0015297: antiporter activity	4.86E-02
64	GO:0005351: sugar:proton symporter activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.20E-43
2	GO:0009535: chloroplast thylakoid membrane	5.88E-34
3	GO:0009534: chloroplast thylakoid	2.41E-31
4	GO:0009941: chloroplast envelope	1.06E-23
5	GO:0009570: chloroplast stroma	1.74E-13
6	GO:0009579: thylakoid	6.72E-11
7	GO:0009543: chloroplast thylakoid lumen	8.28E-11
8	GO:0031977: thylakoid lumen	5.56E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.02E-09
10	GO:0030095: chloroplast photosystem II	5.01E-06
11	GO:0031969: chloroplast membrane	3.73E-05
12	GO:0009706: chloroplast inner membrane	4.23E-05
13	GO:0010287: plastoglobule	5.85E-05
14	GO:0009515: granal stacked thylakoid	9.69E-05
15	GO:0005840: ribosome	2.25E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.28E-04
17	GO:0031357: integral component of chloroplast inner membrane	2.28E-04
18	GO:0030076: light-harvesting complex	2.48E-04
19	GO:0042651: thylakoid membrane	3.41E-04
20	GO:0010007: magnesium chelatase complex	3.80E-04
21	GO:0009544: chloroplast ATP synthase complex	7.26E-04
22	GO:0010319: stromule	9.50E-04
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.12E-03
24	GO:0009533: chloroplast stromal thylakoid	1.57E-03
25	GO:0005763: mitochondrial small ribosomal subunit	2.33E-03
26	GO:0032040: small-subunit processome	3.50E-03
27	GO:0016020: membrane	5.15E-03
28	GO:0015935: small ribosomal subunit	5.93E-03
29	GO:0015629: actin cytoskeleton	6.70E-03
30	GO:0009522: photosystem I	8.79E-03
31	GO:0009523: photosystem II	9.23E-03
32	GO:0015934: large ribosomal subunit	1.68E-02
33	GO:0005856: cytoskeleton	2.33E-02
34	GO:0016021: integral component of membrane	3.01E-02
35	GO:0048046: apoplast	3.04E-02
36	GO:0005623: cell	4.07E-02