co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G80170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
6	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
7	GO:0006573: valine metabolic process	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
10	GO:0045184: establishment of protein localization	0.00E+00
11	GO:1905177: tracheary element differentiation	0.00E+00
12	GO:0010239: chloroplast mRNA processing	2.31E-05
13	GO:0045038: protein import into chloroplast thylakoid membrane	6.67E-05
14	GO:0009451: RNA modification	1.59E-04
15	GO:0006551: leucine metabolic process	2.46E-04
16	GO:2000021: regulation of ion homeostasis	2.46E-04
17	GO:0035987: endodermal cell differentiation	2.46E-04
18	GO:0090548: response to nitrate starvation	2.46E-04
19	GO:1902458: positive regulation of stomatal opening	2.46E-04
20	GO:0000305: response to oxygen radical	2.46E-04
21	GO:0006419: alanyl-tRNA aminoacylation	2.46E-04
22	GO:0042659: regulation of cell fate specification	2.46E-04
23	GO:0090558: plant epidermis development	2.46E-04
24	GO:0031426: polycistronic mRNA processing	2.46E-04
25	GO:0000012: single strand break repair	2.46E-04
26	GO:1902025: nitrate import	2.46E-04
27	GO:0043266: regulation of potassium ion transport	2.46E-04
28	GO:0010063: positive regulation of trichoblast fate specification	2.46E-04
29	GO:0071482: cellular response to light stimulus	2.78E-04
30	GO:0000373: Group II intron splicing	3.36E-04
31	GO:0048507: meristem development	3.36E-04
32	GO:0030422: production of siRNA involved in RNA interference	4.67E-04
33	GO:0010216: maintenance of DNA methylation	5.39E-04
34	GO:0080009: mRNA methylation	5.44E-04
35	GO:0001682: tRNA 5'-leader removal	5.44E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.44E-04
37	GO:0051214: RNA virus induced gene silencing	5.44E-04
38	GO:0006420: arginyl-tRNA aminoacylation	5.44E-04
39	GO:0060359: response to ammonium ion	5.44E-04
40	GO:0048255: mRNA stabilization	5.44E-04
41	GO:1900871: chloroplast mRNA modification	5.44E-04
42	GO:1901959: positive regulation of cutin biosynthetic process	5.44E-04
43	GO:0006432: phenylalanyl-tRNA aminoacylation	5.44E-04
44	GO:0010207: photosystem II assembly	7.88E-04
45	GO:0006696: ergosterol biosynthetic process	8.83E-04
46	GO:0090153: regulation of sphingolipid biosynthetic process	8.83E-04
47	GO:0043157: response to cation stress	8.83E-04
48	GO:0072661: protein targeting to plasma membrane	8.83E-04
49	GO:0005977: glycogen metabolic process	8.83E-04
50	GO:0030029: actin filament-based process	8.83E-04
51	GO:0033591: response to L-ascorbic acid	8.83E-04
52	GO:0031022: nuclear migration along microfilament	8.83E-04
53	GO:0090708: specification of plant organ axis polarity	8.83E-04
54	GO:1904278: positive regulation of wax biosynthetic process	8.83E-04
55	GO:0010623: programmed cell death involved in cell development	8.83E-04
56	GO:0007166: cell surface receptor signaling pathway	1.15E-03
57	GO:2001141: regulation of RNA biosynthetic process	1.26E-03
58	GO:0090308: regulation of methylation-dependent chromatin silencing	1.26E-03
59	GO:0010071: root meristem specification	1.26E-03
60	GO:0009102: biotin biosynthetic process	1.26E-03
61	GO:0051639: actin filament network formation	1.26E-03
62	GO:0019048: modulation by virus of host morphology or physiology	1.26E-03
63	GO:0009226: nucleotide-sugar biosynthetic process	1.26E-03
64	GO:0031048: chromatin silencing by small RNA	1.26E-03
65	GO:0010021: amylopectin biosynthetic process	1.68E-03
66	GO:0051764: actin crosslink formation	1.68E-03
67	GO:0048442: sepal development	1.68E-03
68	GO:0006661: phosphatidylinositol biosynthetic process	1.68E-03
69	GO:0030104: water homeostasis	1.68E-03
70	GO:0045723: positive regulation of fatty acid biosynthetic process	1.68E-03
71	GO:0051567: histone H3-K9 methylation	1.68E-03
72	GO:0010508: positive regulation of autophagy	1.68E-03
73	GO:0008295: spermidine biosynthetic process	1.68E-03
74	GO:0006749: glutathione metabolic process	1.68E-03
75	GO:0016117: carotenoid biosynthetic process	1.82E-03
76	GO:0008033: tRNA processing	1.97E-03
77	GO:0045489: pectin biosynthetic process	2.12E-03
78	GO:0010305: leaf vascular tissue pattern formation	2.12E-03
79	GO:0016123: xanthophyll biosynthetic process	2.15E-03
80	GO:0080110: sporopollenin biosynthetic process	2.15E-03
81	GO:0009904: chloroplast accumulation movement	2.15E-03
82	GO:0010236: plastoquinone biosynthetic process	2.15E-03
83	GO:0007018: microtubule-based movement	2.27E-03
84	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.65E-03
85	GO:0009959: negative gravitropism	2.65E-03
86	GO:0016554: cytidine to uridine editing	2.65E-03
87	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.65E-03
88	GO:0016458: gene silencing	2.65E-03
89	GO:0009099: valine biosynthetic process	3.18E-03
90	GO:0009903: chloroplast avoidance movement	3.18E-03
91	GO:0009648: photoperiodism	3.18E-03
92	GO:2000067: regulation of root morphogenesis	3.18E-03
93	GO:0042372: phylloquinone biosynthetic process	3.18E-03
94	GO:0010076: maintenance of floral meristem identity	3.18E-03
95	GO:0009082: branched-chain amino acid biosynthetic process	3.18E-03
96	GO:0051607: defense response to virus	3.55E-03
97	GO:0048437: floral organ development	3.75E-03
98	GO:0006400: tRNA modification	3.75E-03
99	GO:0010027: thylakoid membrane organization	3.76E-03
100	GO:2000070: regulation of response to water deprivation	4.35E-03
101	GO:0055075: potassium ion homeostasis	4.35E-03
102	GO:0048564: photosystem I assembly	4.35E-03
103	GO:0070413: trehalose metabolism in response to stress	4.35E-03
104	GO:0015996: chlorophyll catabolic process	4.98E-03
105	GO:0009827: plant-type cell wall modification	4.98E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	4.98E-03
107	GO:0009657: plastid organization	4.98E-03
108	GO:0009097: isoleucine biosynthetic process	4.98E-03
109	GO:0032544: plastid translation	4.98E-03
110	GO:0009793: embryo development ending in seed dormancy	5.25E-03
111	GO:0000902: cell morphogenesis	5.65E-03
112	GO:0009910: negative regulation of flower development	5.67E-03
113	GO:0016573: histone acetylation	6.33E-03
114	GO:0009098: leucine biosynthetic process	6.33E-03
115	GO:0010267: production of ta-siRNAs involved in RNA interference	6.33E-03
116	GO:2000280: regulation of root development	6.33E-03
117	GO:1900865: chloroplast RNA modification	6.33E-03
118	GO:0016571: histone methylation	6.33E-03
119	GO:0031627: telomeric loop formation	7.06E-03
120	GO:0009299: mRNA transcription	7.06E-03
121	GO:0048441: petal development	7.06E-03
122	GO:0006415: translational termination	7.80E-03
123	GO:0006352: DNA-templated transcription, initiation	7.80E-03
124	GO:0045037: protein import into chloroplast stroma	8.58E-03
125	GO:0009658: chloroplast organization	8.93E-03
126	GO:0009718: anthocyanin-containing compound biosynthetic process	9.38E-03
127	GO:0009725: response to hormone	9.38E-03
128	GO:0009691: cytokinin biosynthetic process	9.38E-03
129	GO:0009887: animal organ morphogenesis	1.02E-02
130	GO:0009266: response to temperature stimulus	1.02E-02
131	GO:0006302: double-strand break repair	1.02E-02
132	GO:0048440: carpel development	1.02E-02
133	GO:0009416: response to light stimulus	1.09E-02
134	GO:0010030: positive regulation of seed germination	1.11E-02
135	GO:0006833: water transport	1.20E-02
136	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.23E-02
137	GO:0005992: trehalose biosynthetic process	1.29E-02
138	GO:0006338: chromatin remodeling	1.29E-02
139	GO:0007010: cytoskeleton organization	1.29E-02
140	GO:0051017: actin filament bundle assembly	1.29E-02
141	GO:0006289: nucleotide-excision repair	1.29E-02
142	GO:0048316: seed development	1.32E-02
143	GO:0051302: regulation of cell division	1.38E-02
144	GO:0008299: isoprenoid biosynthetic process	1.38E-02
145	GO:0007017: microtubule-based process	1.38E-02
146	GO:0016569: covalent chromatin modification	1.45E-02
147	GO:0015992: proton transport	1.47E-02
148	GO:0006306: DNA methylation	1.47E-02
149	GO:0006396: RNA processing	1.59E-02
150	GO:0009742: brassinosteroid mediated signaling pathway	1.64E-02
151	GO:0010089: xylem development	1.77E-02
152	GO:0010584: pollen exine formation	1.77E-02
153	GO:0048443: stamen development	1.77E-02
154	GO:0042127: regulation of cell proliferation	1.77E-02
155	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.88E-02
156	GO:0010118: stomatal movement	1.99E-02
157	GO:0042631: cellular response to water deprivation	1.99E-02
158	GO:0010182: sugar mediated signaling pathway	2.09E-02
159	GO:0048868: pollen tube development	2.09E-02
160	GO:0046323: glucose import	2.09E-02
161	GO:0006342: chromatin silencing	2.09E-02
162	GO:0009958: positive gravitropism	2.09E-02
163	GO:0048544: recognition of pollen	2.21E-02
164	GO:0009790: embryo development	2.26E-02
165	GO:0019252: starch biosynthetic process	2.32E-02
166	GO:0008654: phospholipid biosynthetic process	2.32E-02
167	GO:0009791: post-embryonic development	2.32E-02
168	GO:0000302: response to reactive oxygen species	2.43E-02
169	GO:0009630: gravitropism	2.55E-02
170	GO:0040008: regulation of growth	2.55E-02
171	GO:0031047: gene silencing by RNA	2.55E-02
172	GO:0016032: viral process	2.55E-02
173	GO:0016126: sterol biosynthetic process	3.16E-02
174	GO:0009816: defense response to bacterium, incompatible interaction	3.29E-02
175	GO:0015995: chlorophyll biosynthetic process	3.55E-02
176	GO:0016311: dephosphorylation	3.69E-02
177	GO:0048481: plant ovule development	3.82E-02
178	GO:0030244: cellulose biosynthetic process	3.82E-02
179	GO:0009834: plant-type secondary cell wall biogenesis	4.10E-02
180	GO:0006865: amino acid transport	4.38E-02
181	GO:0009637: response to blue light	4.52E-02
182	GO:0045087: innate immune response	4.52E-02
183	GO:0048366: leaf development	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
4	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0001872: (1->3)-beta-D-glucan binding	2.31E-05
10	GO:0003723: RNA binding	3.27E-05
11	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.46E-04
12	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.46E-04
13	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.46E-04
14	GO:0004813: alanine-tRNA ligase activity	2.46E-04
15	GO:0003984: acetolactate synthase activity	2.46E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	2.46E-04
17	GO:0008158: hedgehog receptor activity	2.46E-04
18	GO:0051996: squalene synthase activity	2.46E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.46E-04
20	GO:0004362: glutathione-disulfide reductase activity	5.44E-04
21	GO:0003852: 2-isopropylmalate synthase activity	5.44E-04
22	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.44E-04
23	GO:0043425: bHLH transcription factor binding	5.44E-04
24	GO:0004814: arginine-tRNA ligase activity	5.44E-04
25	GO:0004766: spermidine synthase activity	5.44E-04
26	GO:0008805: carbon-monoxide oxygenase activity	5.44E-04
27	GO:0004826: phenylalanine-tRNA ligase activity	5.44E-04
28	GO:0019156: isoamylase activity	5.44E-04
29	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.44E-04
30	GO:0048531: beta-1,3-galactosyltransferase activity	5.44E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.44E-04
32	GO:0000049: tRNA binding	6.18E-04
33	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.88E-04
34	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.48E-04
35	GO:0016805: dipeptidase activity	8.83E-04
36	GO:0070402: NADPH binding	8.83E-04
37	GO:0004180: carboxypeptidase activity	8.83E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	8.83E-04
39	GO:0004519: endonuclease activity	1.20E-03
40	GO:0005354: galactose transmembrane transporter activity	1.26E-03
41	GO:0048027: mRNA 5'-UTR binding	1.26E-03
42	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.26E-03
43	GO:0016149: translation release factor activity, codon specific	1.26E-03
44	GO:0035197: siRNA binding	1.26E-03
45	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.26E-03
46	GO:0001053: plastid sigma factor activity	1.68E-03
47	GO:0016987: sigma factor activity	1.68E-03
48	GO:0070628: proteasome binding	1.68E-03
49	GO:0042277: peptide binding	1.68E-03
50	GO:0003690: double-stranded DNA binding	1.70E-03
51	GO:0005524: ATP binding	1.97E-03
52	GO:0005471: ATP:ADP antiporter activity	2.15E-03
53	GO:0004526: ribonuclease P activity	2.65E-03
54	GO:0031593: polyubiquitin binding	2.65E-03
55	GO:0004556: alpha-amylase activity	2.65E-03
56	GO:0016208: AMP binding	2.65E-03
57	GO:0004462: lactoylglutathione lyase activity	2.65E-03
58	GO:0004656: procollagen-proline 4-dioxygenase activity	3.18E-03
59	GO:0005200: structural constituent of cytoskeleton	3.35E-03
60	GO:0016597: amino acid binding	3.55E-03
61	GO:0004427: inorganic diphosphatase activity	3.75E-03
62	GO:0043022: ribosome binding	4.35E-03
63	GO:0004525: ribonuclease III activity	4.35E-03
64	GO:0030247: polysaccharide binding	4.43E-03
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.64E-03
66	GO:0003747: translation release factor activity	5.65E-03
67	GO:0003697: single-stranded DNA binding	6.21E-03
68	GO:0004805: trehalose-phosphatase activity	7.06E-03
69	GO:0003691: double-stranded telomeric DNA binding	7.80E-03
70	GO:0004521: endoribonuclease activity	8.58E-03
71	GO:0000976: transcription regulatory region sequence-specific DNA binding	8.58E-03
72	GO:0016887: ATPase activity	8.88E-03
73	GO:0031072: heat shock protein binding	9.38E-03
74	GO:0009982: pseudouridine synthase activity	9.38E-03
75	GO:0003725: double-stranded RNA binding	9.38E-03
76	GO:0008266: poly(U) RNA binding	1.02E-02
77	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.08E-02
78	GO:0003777: microtubule motor activity	1.20E-02
79	GO:0031418: L-ascorbic acid binding	1.29E-02
80	GO:0043130: ubiquitin binding	1.29E-02
81	GO:0005528: FK506 binding	1.29E-02
82	GO:0004176: ATP-dependent peptidase activity	1.47E-02
83	GO:0003727: single-stranded RNA binding	1.77E-02
84	GO:0004527: exonuclease activity	2.09E-02
85	GO:0008080: N-acetyltransferase activity	2.09E-02
86	GO:0016853: isomerase activity	2.21E-02
87	GO:0005355: glucose transmembrane transporter activity	2.21E-02
88	GO:0050662: coenzyme binding	2.21E-02
89	GO:0010181: FMN binding	2.21E-02
90	GO:0019901: protein kinase binding	2.32E-02
91	GO:0051015: actin filament binding	2.67E-02
92	GO:0003684: damaged DNA binding	2.79E-02
93	GO:0016791: phosphatase activity	2.79E-02
94	GO:0008017: microtubule binding	2.80E-02
95	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.91E-02
96	GO:0008237: metallopeptidase activity	2.91E-02
97	GO:0016413: O-acetyltransferase activity	3.04E-02
98	GO:0005096: GTPase activator activity	3.96E-02
99	GO:0004222: metalloendopeptidase activity	4.10E-02
100	GO:0030145: manganese ion binding	4.24E-02
101	GO:0050897: cobalt ion binding	4.24E-02
102	GO:0046872: metal ion binding	4.47E-02
103	GO:0016491: oxidoreductase activity	4.64E-02
104	GO:0003993: acid phosphatase activity	4.66E-02
105	GO:0050660: flavin adenine dinucleotide binding	4.76E-02
106	GO:0050661: NADP binding	4.96E-02
107	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009507: chloroplast	9.37E-15
5	GO:0009570: chloroplast stroma	5.25E-05
6	GO:0009941: chloroplast envelope	1.62E-04
7	GO:0009501: amyloplast	2.25E-04
8	GO:0030529: intracellular ribonucleoprotein complex	4.34E-04
9	GO:0031969: chloroplast membrane	5.26E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	5.44E-04
11	GO:0009513: etioplast	5.44E-04
12	GO:0009528: plastid inner membrane	8.83E-04
13	GO:0009509: chromoplast	8.83E-04
14	GO:0015630: microtubule cytoskeleton	1.26E-03
15	GO:0032432: actin filament bundle	1.26E-03
16	GO:0005719: nuclear euchromatin	1.26E-03
17	GO:0009532: plastid stroma	1.30E-03
18	GO:0046658: anchored component of plasma membrane	1.43E-03
19	GO:0030663: COPI-coated vesicle membrane	1.68E-03
20	GO:0009527: plastid outer membrane	1.68E-03
21	GO:0005871: kinesin complex	1.82E-03
22	GO:0005623: cell	3.52E-03
23	GO:0048226: Casparian strip	4.35E-03
24	GO:0000783: nuclear telomere cap complex	4.98E-03
25	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.98E-03
26	GO:0005720: nuclear heterochromatin	5.65E-03
27	GO:0042644: chloroplast nucleoid	5.65E-03
28	GO:0015030: Cajal body	6.33E-03
29	GO:0000418: DNA-directed RNA polymerase IV complex	7.06E-03
30	GO:0030125: clathrin vesicle coat	7.06E-03
31	GO:0005884: actin filament	7.80E-03
32	GO:0009508: plastid chromosome	9.38E-03
33	GO:0005886: plasma membrane	9.54E-03
34	GO:0030176: integral component of endoplasmic reticulum membrane	1.11E-02
35	GO:0005874: microtubule	1.12E-02
36	GO:0031225: anchored component of membrane	2.13E-02
37	GO:0043231: intracellular membrane-bounded organelle	2.18E-02
38	GO:0031965: nuclear membrane	2.32E-02
39	GO:0005759: mitochondrial matrix	2.43E-02
40	GO:0009705: plant-type vacuole membrane	2.67E-02
41	GO:0005778: peroxisomal membrane	2.91E-02
42	GO:0010319: stromule	2.91E-02
43	GO:0009295: nucleoid	2.91E-02
44	GO:0009707: chloroplast outer membrane	3.82E-02
45	GO:0009535: chloroplast thylakoid membrane	3.83E-02