Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G79790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:0009069: serine family amino acid metabolic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
6GO:0070178: D-serine metabolic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0000476: maturation of 4.5S rRNA0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0000967: rRNA 5'-end processing0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0034470: ncRNA processing3.35E-06
14GO:0015995: chlorophyll biosynthetic process5.89E-05
15GO:0006418: tRNA aminoacylation for protein translation1.02E-04
16GO:0042026: protein refolding1.56E-04
17GO:1901259: chloroplast rRNA processing1.56E-04
18GO:0006353: DNA-templated transcription, termination2.58E-04
19GO:0034337: RNA folding2.70E-04
20GO:0005991: trehalose metabolic process2.70E-04
21GO:0080112: seed growth2.70E-04
22GO:0005980: glycogen catabolic process2.70E-04
23GO:0030198: extracellular matrix organization2.70E-04
24GO:1905039: carboxylic acid transmembrane transport2.70E-04
25GO:1905200: gibberellic acid transmembrane transport2.70E-04
26GO:0042371: vitamin K biosynthetic process2.70E-04
27GO:0043686: co-translational protein modification2.70E-04
28GO:0043007: maintenance of rDNA2.70E-04
29GO:0032544: plastid translation3.19E-04
30GO:0006782: protoporphyrinogen IX biosynthetic process5.32E-04
31GO:0006568: tryptophan metabolic process5.94E-04
32GO:0010270: photosystem II oxygen evolving complex assembly5.94E-04
33GO:0006423: cysteinyl-tRNA aminoacylation5.94E-04
34GO:0018026: peptidyl-lysine monomethylation5.94E-04
35GO:0015979: photosynthesis8.44E-04
36GO:0010207: photosystem II assembly8.95E-04
37GO:0006696: ergosterol biosynthetic process9.62E-04
38GO:0045338: farnesyl diphosphate metabolic process1.38E-03
39GO:0006166: purine ribonucleoside salvage1.38E-03
40GO:0006020: inositol metabolic process1.38E-03
41GO:0071484: cellular response to light intensity1.38E-03
42GO:0051085: chaperone mediated protein folding requiring cofactor1.38E-03
43GO:0009052: pentose-phosphate shunt, non-oxidative branch1.38E-03
44GO:0010731: protein glutathionylation1.38E-03
45GO:0006168: adenine salvage1.38E-03
46GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.38E-03
47GO:0061077: chaperone-mediated protein folding1.48E-03
48GO:0006855: drug transmembrane transport1.61E-03
49GO:0022622: root system development1.84E-03
50GO:0006221: pyrimidine nucleotide biosynthetic process1.84E-03
51GO:0006021: inositol biosynthetic process1.84E-03
52GO:0009658: chloroplast organization2.24E-03
53GO:0007094: mitotic spindle assembly checkpoint2.35E-03
54GO:0044209: AMP salvage2.35E-03
55GO:0032543: mitochondrial translation2.35E-03
56GO:0006564: L-serine biosynthetic process2.35E-03
57GO:0010236: plastoquinone biosynthetic process2.35E-03
58GO:0031365: N-terminal protein amino acid modification2.35E-03
59GO:0009958: positive gravitropism2.42E-03
60GO:0006662: glycerol ether metabolic process2.42E-03
61GO:0010197: polar nucleus fusion2.42E-03
62GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.90E-03
63GO:0006828: manganese ion transport2.90E-03
64GO:1902456: regulation of stomatal opening2.90E-03
65GO:0042793: transcription from plastid promoter2.90E-03
66GO:0010190: cytochrome b6f complex assembly2.90E-03
67GO:0000741: karyogamy2.90E-03
68GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.90E-03
69GO:0046855: inositol phosphate dephosphorylation2.90E-03
70GO:0009643: photosynthetic acclimation2.90E-03
71GO:0006563: L-serine metabolic process2.90E-03
72GO:1901657: glycosyl compound metabolic process3.39E-03
73GO:0009955: adaxial/abaxial pattern specification3.49E-03
74GO:0042372: phylloquinone biosynthetic process3.49E-03
75GO:0006458: 'de novo' protein folding3.49E-03
76GO:0048280: vesicle fusion with Golgi apparatus3.49E-03
77GO:0045454: cell redox homeostasis4.08E-03
78GO:0009772: photosynthetic electron transport in photosystem II4.12E-03
79GO:0010196: nonphotochemical quenching4.12E-03
80GO:0032880: regulation of protein localization4.12E-03
81GO:0010027: thylakoid membrane organization4.30E-03
82GO:0052543: callose deposition in cell wall4.77E-03
83GO:0042255: ribosome assembly4.77E-03
84GO:0046620: regulation of organ growth4.77E-03
85GO:0070413: trehalose metabolism in response to stress4.77E-03
86GO:0010078: maintenance of root meristem identity4.77E-03
87GO:0009657: plastid organization5.47E-03
88GO:0043562: cellular response to nitrogen levels5.47E-03
89GO:0006457: protein folding5.69E-03
90GO:0009813: flavonoid biosynthetic process5.89E-03
91GO:0046685: response to arsenic-containing substance6.20E-03
92GO:0009821: alkaloid biosynthetic process6.20E-03
93GO:0010206: photosystem II repair6.20E-03
94GO:0046916: cellular transition metal ion homeostasis6.20E-03
95GO:0006783: heme biosynthetic process6.20E-03
96GO:0048527: lateral root development6.49E-03
97GO:0043067: regulation of programmed cell death6.96E-03
98GO:0006779: porphyrin-containing compound biosynthetic process6.96E-03
99GO:0034599: cellular response to oxidative stress7.44E-03
100GO:0006896: Golgi to vacuole transport7.75E-03
101GO:0045036: protein targeting to chloroplast7.75E-03
102GO:0009684: indoleacetic acid biosynthetic process8.58E-03
103GO:0010015: root morphogenesis8.58E-03
104GO:0006816: calcium ion transport8.58E-03
105GO:0009773: photosynthetic electron transport in photosystem I8.58E-03
106GO:0015770: sucrose transport8.58E-03
107GO:0006415: translational termination8.58E-03
108GO:0006790: sulfur compound metabolic process9.44E-03
109GO:0005983: starch catabolic process9.44E-03
110GO:0010588: cotyledon vascular tissue pattern formation1.03E-02
111GO:2000012: regulation of auxin polar transport1.03E-02
112GO:0010102: lateral root morphogenesis1.03E-02
113GO:0009266: response to temperature stimulus1.12E-02
114GO:0048467: gynoecium development1.12E-02
115GO:0006541: glutamine metabolic process1.12E-02
116GO:0009735: response to cytokinin1.17E-02
117GO:0009901: anther dehiscence1.22E-02
118GO:0019853: L-ascorbic acid biosynthetic process1.22E-02
119GO:0046854: phosphatidylinositol phosphorylation1.22E-02
120GO:0006364: rRNA processing1.24E-02
121GO:0000162: tryptophan biosynthetic process1.32E-02
122GO:0005992: trehalose biosynthetic process1.42E-02
123GO:0009768: photosynthesis, light harvesting in photosystem I1.52E-02
124GO:0048367: shoot system development1.52E-02
125GO:0051321: meiotic cell cycle1.62E-02
126GO:0016226: iron-sulfur cluster assembly1.73E-02
127GO:0006730: one-carbon metabolic process1.73E-02
128GO:0007005: mitochondrion organization1.73E-02
129GO:0031348: negative regulation of defense response1.73E-02
130GO:0006012: galactose metabolic process1.84E-02
131GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.84E-02
132GO:0009306: protein secretion1.95E-02
133GO:0016117: carotenoid biosynthetic process2.07E-02
134GO:0042147: retrograde transport, endosome to Golgi2.07E-02
135GO:0008284: positive regulation of cell proliferation2.07E-02
136GO:0080022: primary root development2.19E-02
137GO:0010087: phloem or xylem histogenesis2.19E-02
138GO:0010182: sugar mediated signaling pathway2.31E-02
139GO:0007059: chromosome segregation2.43E-02
140GO:0006623: protein targeting to vacuole2.55E-02
141GO:0048825: cotyledon development2.55E-02
142GO:0019252: starch biosynthetic process2.55E-02
143GO:0009851: auxin biosynthetic process2.55E-02
144GO:0009790: embryo development2.59E-02
145GO:0006891: intra-Golgi vesicle-mediated transport2.68E-02
146GO:0006633: fatty acid biosynthetic process2.79E-02
147GO:0032502: developmental process2.81E-02
148GO:0010252: auxin homeostasis3.07E-02
149GO:0009828: plant-type cell wall loosening3.07E-02
150GO:0016126: sterol biosynthetic process3.48E-02
151GO:0009607: response to biotic stimulus3.63E-02
152GO:0009627: systemic acquired resistance3.77E-02
153GO:0006888: ER to Golgi vesicle-mediated transport3.91E-02
154GO:0055114: oxidation-reduction process4.02E-02
155GO:0009817: defense response to fungus, incompatible interaction4.21E-02
156GO:0048481: plant ovule development4.21E-02
157GO:0008219: cell death4.21E-02
158GO:0000160: phosphorelay signal transduction system4.36E-02
159GO:0009832: plant-type cell wall biogenesis4.36E-02
160GO:0009416: response to light stimulus4.64E-02
161GO:0009555: pollen development4.64E-02
162GO:0016051: carbohydrate biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0005201: extracellular matrix structural constituent0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
5GO:0010303: limit dextrinase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0030378: serine racemase activity0.00E+00
9GO:0003941: L-serine ammonia-lyase activity0.00E+00
10GO:0051060: pullulanase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0008721: D-serine ammonia-lyase activity0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0002161: aminoacyl-tRNA editing activity1.21E-05
16GO:0045430: chalcone isomerase activity4.90E-05
17GO:0004812: aminoacyl-tRNA ligase activity1.93E-04
18GO:0004425: indole-3-glycerol-phosphate synthase activity2.70E-04
19GO:1905201: gibberellin transmembrane transporter activity2.70E-04
20GO:0008184: glycogen phosphorylase activity2.70E-04
21GO:0004856: xylulokinase activity2.70E-04
22GO:0004853: uroporphyrinogen decarboxylase activity2.70E-04
23GO:0004645: phosphorylase activity2.70E-04
24GO:0042586: peptide deformylase activity2.70E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.70E-04
26GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.94E-04
27GO:0004617: phosphoglycerate dehydrogenase activity5.94E-04
28GO:0052832: inositol monophosphate 3-phosphatase activity5.94E-04
29GO:0004817: cysteine-tRNA ligase activity5.94E-04
30GO:0008934: inositol monophosphate 1-phosphatase activity5.94E-04
31GO:0052833: inositol monophosphate 4-phosphatase activity5.94E-04
32GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.94E-04
33GO:0016630: protochlorophyllide reductase activity5.94E-04
34GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.94E-04
35GO:0044183: protein binding involved in protein folding6.14E-04
36GO:0019843: rRNA binding7.10E-04
37GO:0015238: drug transmembrane transporter activity7.68E-04
38GO:0005504: fatty acid binding9.62E-04
39GO:0004148: dihydrolipoyl dehydrogenase activity9.62E-04
40GO:0004751: ribose-5-phosphate isomerase activity9.62E-04
41GO:0045174: glutathione dehydrogenase (ascorbate) activity9.62E-04
42GO:0004049: anthranilate synthase activity9.62E-04
43GO:0005528: FK506 binding1.23E-03
44GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.38E-03
45GO:0009041: uridylate kinase activity1.38E-03
46GO:0003999: adenine phosphoribosyltransferase activity1.38E-03
47GO:0016851: magnesium chelatase activity1.38E-03
48GO:0016149: translation release factor activity, codon specific1.38E-03
49GO:0022890: inorganic cation transmembrane transporter activity1.38E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.61E-03
51GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.84E-03
52GO:0004659: prenyltransferase activity1.84E-03
53GO:0016279: protein-lysine N-methyltransferase activity1.84E-03
54GO:0047134: protein-disulfide reductase activity2.08E-03
55GO:0016846: carbon-sulfur lyase activity2.35E-03
56GO:0003959: NADPH dehydrogenase activity2.35E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor2.35E-03
58GO:0004791: thioredoxin-disulfide reductase activity2.60E-03
59GO:0004556: alpha-amylase activity2.90E-03
60GO:0051082: unfolded protein binding3.03E-03
61GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.39E-03
62GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.49E-03
63GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.49E-03
64GO:0004033: aldo-keto reductase (NADP) activity4.77E-03
65GO:0004525: ribonuclease III activity4.77E-03
66GO:0102483: scopolin beta-glucosidase activity5.06E-03
67GO:0046914: transition metal ion binding5.47E-03
68GO:0015297: antiporter activity5.73E-03
69GO:0003747: translation release factor activity6.20E-03
70GO:0005384: manganese ion transmembrane transporter activity6.96E-03
71GO:0016844: strictosidine synthase activity6.96E-03
72GO:0015020: glucuronosyltransferase activity7.75E-03
73GO:0008422: beta-glucosidase activity7.77E-03
74GO:0047372: acylglycerol lipase activity8.58E-03
75GO:0015386: potassium:proton antiporter activity8.58E-03
76GO:0008515: sucrose transmembrane transporter activity8.58E-03
77GO:0008559: xenobiotic-transporting ATPase activity8.58E-03
78GO:0000049: tRNA binding9.44E-03
79GO:0003725: double-stranded RNA binding1.03E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity1.03E-02
81GO:0004089: carbonate dehydratase activity1.03E-02
82GO:0015095: magnesium ion transmembrane transporter activity1.03E-02
83GO:0031072: heat shock protein binding1.03E-02
84GO:0008083: growth factor activity1.12E-02
85GO:0008266: poly(U) RNA binding1.12E-02
86GO:0051119: sugar transmembrane transporter activity1.22E-02
87GO:0031409: pigment binding1.32E-02
88GO:0051536: iron-sulfur cluster binding1.42E-02
89GO:0015079: potassium ion transmembrane transporter activity1.52E-02
90GO:0015035: protein disulfide oxidoreductase activity1.82E-02
91GO:0003727: single-stranded RNA binding1.95E-02
92GO:0015299: solute:proton antiporter activity2.43E-02
93GO:0004252: serine-type endopeptidase activity2.46E-02
94GO:0030170: pyridoxal phosphate binding2.46E-02
95GO:0008565: protein transporter activity2.66E-02
96GO:0048038: quinone binding2.68E-02
97GO:0000156: phosphorelay response regulator activity2.94E-02
98GO:0016791: phosphatase activity3.07E-02
99GO:0008237: metallopeptidase activity3.21E-02
100GO:0016597: amino acid binding3.34E-02
101GO:0016168: chlorophyll binding3.63E-02
102GO:0008375: acetylglucosaminyltransferase activity3.77E-02
103GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.21E-02
104GO:0004222: metalloendopeptidase activity4.51E-02
105GO:0008168: methyltransferase activity4.54E-02
106GO:0016788: hydrolase activity, acting on ester bonds4.80E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0009507: chloroplast1.18E-34
4GO:0009570: chloroplast stroma4.17E-23
5GO:0009535: chloroplast thylakoid membrane5.27E-16
6GO:0009941: chloroplast envelope3.52E-09
7GO:0031969: chloroplast membrane1.01E-07
8GO:0009534: chloroplast thylakoid1.49E-07
9GO:0009579: thylakoid1.38E-06
10GO:0009543: chloroplast thylakoid lumen9.41E-06
11GO:0031977: thylakoid lumen1.51E-04
12GO:0009547: plastid ribosome2.70E-04
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.84E-04
14GO:0009295: nucleoid4.43E-04
15GO:0009508: plastid chromosome7.96E-04
16GO:0010007: magnesium chelatase complex9.62E-04
17GO:0033281: TAT protein transport complex9.62E-04
18GO:0005828: kinetochore microtubule1.84E-03
19GO:0000776: kinetochore2.35E-03
20GO:0009840: chloroplastic endopeptidase Clp complex3.49E-03
21GO:0000777: condensed chromosome kinetochore3.49E-03
22GO:0012507: ER to Golgi transport vesicle membrane4.77E-03
23GO:0009536: plastid5.70E-03
24GO:0005763: mitochondrial small ribosomal subunit6.20E-03
25GO:0005876: spindle microtubule6.96E-03
26GO:0031902: late endosome membrane8.46E-03
27GO:0000311: plastid large ribosomal subunit9.44E-03
28GO:0032040: small-subunit processome9.44E-03
29GO:0030095: chloroplast photosystem II1.12E-02
30GO:0030076: light-harvesting complex1.22E-02
31GO:0009654: photosystem II oxygen evolving complex1.52E-02
32GO:0042651: thylakoid membrane1.52E-02
33GO:0015935: small ribosomal subunit1.62E-02
34GO:0009532: plastid stroma1.62E-02
35GO:0009706: chloroplast inner membrane1.77E-02
36GO:0005770: late endosome2.31E-02
37GO:0019898: extrinsic component of membrane2.55E-02
38GO:0010319: stromule3.21E-02
39GO:0016020: membrane3.82E-02
40GO:0046658: anchored component of plasma membrane4.04E-02
41GO:0005840: ribosome4.07E-02
42GO:0009707: chloroplast outer membrane4.21E-02
43GO:0000325: plant-type vacuole4.66E-02
44GO:0015934: large ribosomal subunit4.66E-02
<
Gene type



Gene DE type