Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G79700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0071000: response to magnetism0.00E+00
8GO:0010062: negative regulation of trichoblast fate specification0.00E+00
9GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:2000469: negative regulation of peroxidase activity0.00E+00
12GO:0010081: regulation of inflorescence meristem growth0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0045038: protein import into chloroplast thylakoid membrane2.13E-06
15GO:1900871: chloroplast mRNA modification7.32E-06
16GO:2001141: regulation of RNA biosynthetic process5.54E-05
17GO:0010239: chloroplast mRNA processing5.54E-05
18GO:0009733: response to auxin1.86E-04
19GO:0009658: chloroplast organization2.92E-04
20GO:0030307: positive regulation of cell growth3.76E-04
21GO:1904964: positive regulation of phytol biosynthetic process4.05E-04
22GO:0072387: flavin adenine dinucleotide metabolic process4.05E-04
23GO:0015904: tetracycline transport4.05E-04
24GO:2000021: regulation of ion homeostasis4.05E-04
25GO:2000905: negative regulation of starch metabolic process4.05E-04
26GO:0000305: response to oxygen radical4.05E-04
27GO:0070509: calcium ion import4.05E-04
28GO:0006419: alanyl-tRNA aminoacylation4.05E-04
29GO:0051247: positive regulation of protein metabolic process4.05E-04
30GO:0031426: polycistronic mRNA processing4.05E-04
31GO:1902458: positive regulation of stomatal opening4.05E-04
32GO:0051775: response to redox state4.05E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process4.05E-04
34GO:0043266: regulation of potassium ion transport4.05E-04
35GO:0010063: positive regulation of trichoblast fate specification4.05E-04
36GO:0015969: guanosine tetraphosphate metabolic process4.05E-04
37GO:0010080: regulation of floral meristem growth4.05E-04
38GO:0005975: carbohydrate metabolic process4.69E-04
39GO:0046620: regulation of organ growth4.71E-04
40GO:0009734: auxin-activated signaling pathway5.47E-04
41GO:0040008: regulation of growth5.62E-04
42GO:0009646: response to absence of light5.73E-04
43GO:0071482: cellular response to light stimulus5.75E-04
44GO:0000373: Group II intron splicing6.89E-04
45GO:0010583: response to cyclopentenone7.44E-04
46GO:1900865: chloroplast RNA modification8.13E-04
47GO:0009638: phototropism8.13E-04
48GO:0060359: response to ammonium ion8.76E-04
49GO:0048255: mRNA stabilization8.76E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process8.76E-04
51GO:0080009: mRNA methylation8.76E-04
52GO:0010343: singlet oxygen-mediated programmed cell death8.76E-04
53GO:0010617: circadian regulation of calcium ion oscillation8.76E-04
54GO:1903426: regulation of reactive oxygen species biosynthetic process8.76E-04
55GO:1901529: positive regulation of anion channel activity8.76E-04
56GO:0099402: plant organ development8.76E-04
57GO:0006352: DNA-templated transcription, initiation1.09E-03
58GO:2000012: regulation of auxin polar transport1.41E-03
59GO:0006696: ergosterol biosynthetic process1.42E-03
60GO:0090153: regulation of sphingolipid biosynthetic process1.42E-03
61GO:0048586: regulation of long-day photoperiodism, flowering1.42E-03
62GO:0043157: response to cation stress1.42E-03
63GO:0010022: meristem determinacy1.42E-03
64GO:0005977: glycogen metabolic process1.42E-03
65GO:1901672: positive regulation of systemic acquired resistance1.42E-03
66GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.42E-03
67GO:1902448: positive regulation of shade avoidance1.42E-03
68GO:0010623: programmed cell death involved in cell development1.42E-03
69GO:0018298: protein-chromophore linkage1.52E-03
70GO:0010207: photosystem II assembly1.59E-03
71GO:0070588: calcium ion transmembrane transport1.78E-03
72GO:0043572: plastid fission2.06E-03
73GO:0090308: regulation of methylation-dependent chromatin silencing2.06E-03
74GO:0010071: root meristem specification2.06E-03
75GO:0051513: regulation of monopolar cell growth2.06E-03
76GO:0007231: osmosensory signaling pathway2.06E-03
77GO:0009226: nucleotide-sugar biosynthetic process2.06E-03
78GO:0031048: chromatin silencing by small RNA2.06E-03
79GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
80GO:0051639: actin filament network formation2.06E-03
81GO:0006107: oxaloacetate metabolic process2.06E-03
82GO:1901332: negative regulation of lateral root development2.06E-03
83GO:0016556: mRNA modification2.06E-03
84GO:0019048: modulation by virus of host morphology or physiology2.06E-03
85GO:0007275: multicellular organism development2.65E-03
86GO:0010021: amylopectin biosynthetic process2.76E-03
87GO:2000122: negative regulation of stomatal complex development2.76E-03
88GO:0033500: carbohydrate homeostasis2.76E-03
89GO:0051567: histone H3-K9 methylation2.76E-03
90GO:0010508: positive regulation of autophagy2.76E-03
91GO:0051764: actin crosslink formation2.76E-03
92GO:0008295: spermidine biosynthetic process2.76E-03
93GO:0006749: glutathione metabolic process2.76E-03
94GO:0006661: phosphatidylinositol biosynthetic process2.76E-03
95GO:0010109: regulation of photosynthesis2.76E-03
96GO:0009765: photosynthesis, light harvesting2.76E-03
97GO:2000306: positive regulation of photomorphogenesis2.76E-03
98GO:0006109: regulation of carbohydrate metabolic process2.76E-03
99GO:0006734: NADH metabolic process2.76E-03
100GO:1902347: response to strigolactone2.76E-03
101GO:0022622: root system development2.76E-03
102GO:0009416: response to light stimulus3.13E-03
103GO:0080110: sporopollenin biosynthetic process3.54E-03
104GO:0016123: xanthophyll biosynthetic process3.54E-03
105GO:0009957: epidermal cell fate specification3.54E-03
106GO:0010117: photoprotection3.54E-03
107GO:0010375: stomatal complex patterning3.54E-03
108GO:0046283: anthocyanin-containing compound metabolic process3.54E-03
109GO:0016554: cytidine to uridine editing4.38E-03
110GO:0006655: phosphatidylglycerol biosynthetic process4.38E-03
111GO:0010182: sugar mediated signaling pathway4.38E-03
112GO:1901371: regulation of leaf morphogenesis4.38E-03
113GO:0060918: auxin transport4.38E-03
114GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
115GO:0032973: amino acid export4.38E-03
116GO:0009959: negative gravitropism4.38E-03
117GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.38E-03
118GO:0016458: gene silencing4.38E-03
119GO:0008654: phospholipid biosynthetic process5.06E-03
120GO:0010189: vitamin E biosynthetic process5.27E-03
121GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.27E-03
122GO:0010310: regulation of hydrogen peroxide metabolic process5.27E-03
123GO:2000033: regulation of seed dormancy process5.27E-03
124GO:0080086: stamen filament development5.27E-03
125GO:0032502: developmental process5.79E-03
126GO:0048437: floral organ development6.23E-03
127GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.23E-03
128GO:0032880: regulation of protein localization6.23E-03
129GO:0048528: post-embryonic root development6.23E-03
130GO:0043090: amino acid import6.23E-03
131GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.23E-03
132GO:0010374: stomatal complex development6.23E-03
133GO:0010444: guard mother cell differentiation6.23E-03
134GO:0006400: tRNA modification6.23E-03
135GO:0051510: regulation of unidimensional cell growth6.23E-03
136GO:0009828: plant-type cell wall loosening6.57E-03
137GO:2000070: regulation of response to water deprivation7.25E-03
138GO:0000105: histidine biosynthetic process7.25E-03
139GO:0042255: ribosome assembly7.25E-03
140GO:0006353: DNA-templated transcription, termination7.25E-03
141GO:0048564: photosystem I assembly7.25E-03
142GO:0009690: cytokinin metabolic process7.25E-03
143GO:0006605: protein targeting7.25E-03
144GO:0010027: thylakoid membrane organization7.85E-03
145GO:0007186: G-protein coupled receptor signaling pathway8.32E-03
146GO:0009657: plastid organization8.32E-03
147GO:0010052: guard cell differentiation8.32E-03
148GO:0015996: chlorophyll catabolic process8.32E-03
149GO:0015995: chlorophyll biosynthetic process9.25E-03
150GO:0000902: cell morphogenesis9.45E-03
151GO:0048507: meristem development9.45E-03
152GO:0080144: amino acid homeostasis9.45E-03
153GO:0009051: pentose-phosphate shunt, oxidative branch9.45E-03
154GO:1900426: positive regulation of defense response to bacterium1.06E-02
155GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
156GO:0030422: production of siRNA involved in RNA interference1.19E-02
157GO:0006949: syncytium formation1.19E-02
158GO:0048527: lateral root development1.19E-02
159GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
160GO:0009299: mRNA transcription1.19E-02
161GO:0031627: telomeric loop formation1.19E-02
162GO:0010162: seed dormancy process1.19E-02
163GO:0009637: response to blue light1.30E-02
164GO:0009773: photosynthetic electron transport in photosystem I1.31E-02
165GO:0019684: photosynthesis, light reaction1.31E-02
166GO:0009089: lysine biosynthetic process via diaminopimelate1.31E-02
167GO:0043085: positive regulation of catalytic activity1.31E-02
168GO:0006415: translational termination1.31E-02
169GO:0010216: maintenance of DNA methylation1.31E-02
170GO:0006816: calcium ion transport1.31E-02
171GO:0009451: RNA modification1.35E-02
172GO:0016024: CDP-diacylglycerol biosynthetic process1.45E-02
173GO:0045037: protein import into chloroplast stroma1.45E-02
174GO:0010582: floral meristem determinacy1.45E-02
175GO:0007166: cell surface receptor signaling pathway1.55E-02
176GO:0050826: response to freezing1.58E-02
177GO:0009785: blue light signaling pathway1.58E-02
178GO:0009718: anthocyanin-containing compound biosynthetic process1.58E-02
179GO:0010075: regulation of meristem growth1.58E-02
180GO:0010628: positive regulation of gene expression1.58E-02
181GO:0009725: response to hormone1.58E-02
182GO:0006108: malate metabolic process1.58E-02
183GO:0010114: response to red light1.69E-02
184GO:0009926: auxin polar transport1.69E-02
185GO:0010020: chloroplast fission1.73E-02
186GO:0009644: response to high light intensity1.82E-02
187GO:0010030: positive regulation of seed germination1.87E-02
188GO:0006071: glycerol metabolic process2.02E-02
189GO:0009664: plant-type cell wall organization2.12E-02
190GO:0009826: unidimensional cell growth2.17E-02
191GO:2000377: regulation of reactive oxygen species metabolic process2.18E-02
192GO:0007010: cytoskeleton organization2.18E-02
193GO:0051017: actin filament bundle assembly2.18E-02
194GO:0007017: microtubule-based process2.33E-02
195GO:0008299: isoprenoid biosynthetic process2.33E-02
196GO:0006306: DNA methylation2.50E-02
197GO:0010431: seed maturation2.50E-02
198GO:0030245: cellulose catabolic process2.66E-02
199GO:0048316: seed development2.78E-02
200GO:0048366: leaf development2.80E-02
201GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
202GO:0019722: calcium-mediated signaling3.01E-02
203GO:0042127: regulation of cell proliferation3.01E-02
204GO:0010089: xylem development3.01E-02
205GO:0010584: pollen exine formation3.01E-02
206GO:0009740: gibberellic acid mediated signaling pathway3.05E-02
207GO:0008284: positive regulation of cell proliferation3.19E-02
208GO:0016117: carotenoid biosynthetic process3.19E-02
209GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.19E-02
210GO:0008033: tRNA processing3.37E-02
211GO:0010118: stomatal movement3.37E-02
212GO:0042631: cellular response to water deprivation3.37E-02
213GO:0015979: photosynthesis3.52E-02
214GO:0045489: pectin biosynthetic process3.55E-02
215GO:0009958: positive gravitropism3.55E-02
216GO:0048868: pollen tube development3.55E-02
217GO:0010305: leaf vascular tissue pattern formation3.55E-02
218GO:0006342: chromatin silencing3.55E-02
219GO:0006662: glycerol ether metabolic process3.55E-02
220GO:0045454: cell redox homeostasis3.73E-02
221GO:0042752: regulation of circadian rhythm3.74E-02
222GO:0009791: post-embryonic development3.93E-02
223GO:0019252: starch biosynthetic process3.93E-02
224GO:0016032: viral process4.32E-02
225GO:0009630: gravitropism4.32E-02
226GO:0010090: trichome morphogenesis4.52E-02
227GO:0010252: auxin homeostasis4.73E-02
228GO:0006464: cellular protein modification process4.73E-02
229GO:0006629: lipid metabolic process4.82E-02
230GO:0007267: cell-cell signaling4.93E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0010276: phytol kinase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
7GO:0001053: plastid sigma factor activity9.74E-05
8GO:0016987: sigma factor activity9.74E-05
9GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.05E-04
10GO:0008746: NAD(P)+ transhydrogenase activity4.05E-04
11GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity4.05E-04
12GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.05E-04
13GO:0004813: alanine-tRNA ligase activity4.05E-04
14GO:0003879: ATP phosphoribosyltransferase activity4.05E-04
15GO:0051996: squalene synthase activity4.05E-04
16GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.05E-04
17GO:0008158: hedgehog receptor activity4.05E-04
18GO:0017118: lipoyltransferase activity8.76E-04
19GO:0008493: tetracycline transporter activity8.76E-04
20GO:0004362: glutathione-disulfide reductase activity8.76E-04
21GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity8.76E-04
22GO:0004766: spermidine synthase activity8.76E-04
23GO:0019156: isoamylase activity8.76E-04
24GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.76E-04
25GO:0048531: beta-1,3-galactosyltransferase activity8.76E-04
26GO:0043425: bHLH transcription factor binding8.76E-04
27GO:0008728: GTP diphosphokinase activity8.76E-04
28GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.76E-04
29GO:0005262: calcium channel activity1.41E-03
30GO:0003913: DNA photolyase activity1.42E-03
31GO:0004148: dihydrolipoyl dehydrogenase activity1.42E-03
32GO:0070402: NADPH binding1.42E-03
33GO:0015462: ATPase-coupled protein transmembrane transporter activity1.42E-03
34GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.59E-03
35GO:0048027: mRNA 5'-UTR binding2.06E-03
36GO:0009882: blue light photoreceptor activity2.06E-03
37GO:0001872: (1->3)-beta-D-glucan binding2.06E-03
38GO:0035197: siRNA binding2.06E-03
39GO:0017057: 6-phosphogluconolactonase activity2.06E-03
40GO:0016149: translation release factor activity, codon specific2.06E-03
41GO:0005528: FK506 binding2.20E-03
42GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.58E-03
43GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
45GO:0043495: protein anchor2.76E-03
46GO:0030570: pectate lyase activity3.19E-03
47GO:0003727: single-stranded RNA binding3.47E-03
48GO:0016773: phosphotransferase activity, alcohol group as acceptor3.54E-03
49GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.16E-03
50GO:0016615: malate dehydrogenase activity4.38E-03
51GO:0008200: ion channel inhibitor activity4.38E-03
52GO:0004605: phosphatidate cytidylyltransferase activity4.38E-03
53GO:0004556: alpha-amylase activity4.38E-03
54GO:0004462: lactoylglutathione lyase activity4.38E-03
55GO:0004519: endonuclease activity4.43E-03
56GO:0030060: L-malate dehydrogenase activity5.27E-03
57GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.41E-03
58GO:0009881: photoreceptor activity6.23E-03
59GO:0019899: enzyme binding6.23E-03
60GO:0008312: 7S RNA binding7.25E-03
61GO:0043022: ribosome binding7.25E-03
62GO:0016597: amino acid binding7.41E-03
63GO:0003723: RNA binding8.93E-03
64GO:0008889: glycerophosphodiester phosphodiesterase activity9.45E-03
65GO:0071949: FAD binding9.45E-03
66GO:0003747: translation release factor activity9.45E-03
67GO:0030955: potassium ion binding1.06E-02
68GO:0004743: pyruvate kinase activity1.06E-02
69GO:0004222: metalloendopeptidase activity1.13E-02
70GO:0008047: enzyme activator activity1.19E-02
71GO:0015020: glucuronosyltransferase activity1.19E-02
72GO:0003691: double-stranded telomeric DNA binding1.31E-02
73GO:0000049: tRNA binding1.45E-02
74GO:0000976: transcription regulatory region sequence-specific DNA binding1.45E-02
75GO:0004521: endoribonuclease activity1.45E-02
76GO:0031072: heat shock protein binding1.58E-02
77GO:0008081: phosphoric diester hydrolase activity1.58E-02
78GO:0008083: growth factor activity1.73E-02
79GO:0008266: poly(U) RNA binding1.73E-02
80GO:0042802: identical protein binding1.78E-02
81GO:0008146: sulfotransferase activity1.87E-02
82GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.97E-02
83GO:0004857: enzyme inhibitor activity2.18E-02
84GO:0005345: purine nucleobase transmembrane transporter activity2.33E-02
85GO:0003690: double-stranded DNA binding2.36E-02
86GO:0005525: GTP binding2.44E-02
87GO:0004176: ATP-dependent peptidase activity2.50E-02
88GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
89GO:0008810: cellulase activity2.83E-02
90GO:0004650: polygalacturonase activity2.96E-02
91GO:0047134: protein-disulfide reductase activity3.19E-02
92GO:0052689: carboxylic ester hydrolase activity3.38E-02
93GO:0008080: N-acetyltransferase activity3.55E-02
94GO:0004791: thioredoxin-disulfide reductase activity3.74E-02
95GO:0016853: isomerase activity3.74E-02
96GO:0050662: coenzyme binding3.74E-02
97GO:0019901: protein kinase binding3.93E-02
98GO:0004871: signal transducer activity3.95E-02
99GO:0048038: quinone binding4.12E-02
100GO:0016829: lyase activity4.38E-02
101GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.52E-02
102GO:0051015: actin filament binding4.52E-02
103GO:0003924: GTPase activity4.82E-02
104GO:0008483: transaminase activity4.93E-02
105GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.93E-02
106GO:0008237: metallopeptidase activity4.93E-02
107GO:0005200: structural constituent of cytoskeleton4.93E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast1.59E-18
3GO:0009570: chloroplast stroma2.26E-07
4GO:0080085: signal recognition particle, chloroplast targeting7.32E-06
5GO:0009535: chloroplast thylakoid membrane1.09E-05
6GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.75E-04
7GO:0010319: stromule9.40E-04
8GO:0046658: anchored component of plasma membrane1.00E-03
9GO:0030529: intracellular ribonucleoprotein complex1.09E-03
10GO:0019897: extrinsic component of plasma membrane1.42E-03
11GO:0016605: PML body1.42E-03
12GO:0009528: plastid inner membrane1.42E-03
13GO:0009941: chloroplast envelope1.91E-03
14GO:0031969: chloroplast membrane1.92E-03
15GO:0032432: actin filament bundle2.06E-03
16GO:0015630: microtubule cytoskeleton2.06E-03
17GO:0005719: nuclear euchromatin2.06E-03
18GO:0031225: anchored component of membrane2.42E-03
19GO:0042651: thylakoid membrane2.43E-03
20GO:0009532: plastid stroma2.67E-03
21GO:0009527: plastid outer membrane2.76E-03
22GO:0030663: COPI-coated vesicle membrane2.76E-03
23GO:0009505: plant-type cell wall6.96E-03
24GO:0000783: nuclear telomere cap complex8.32E-03
25GO:0009543: chloroplast thylakoid lumen8.69E-03
26GO:0005720: nuclear heterochromatin9.45E-03
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.45E-03
28GO:0042644: chloroplast nucleoid9.45E-03
29GO:0016604: nuclear body1.06E-02
30GO:0015030: Cajal body1.06E-02
31GO:0000418: DNA-directed RNA polymerase IV complex1.19E-02
32GO:0030125: clathrin vesicle coat1.19E-02
33GO:0005884: actin filament1.31E-02
34GO:0009579: thylakoid1.42E-02
35GO:0000311: plastid large ribosomal subunit1.45E-02
36GO:0005886: plasma membrane1.49E-02
37GO:0005578: proteinaceous extracellular matrix1.58E-02
38GO:0009654: photosystem II oxygen evolving complex2.33E-02
39GO:0009523: photosystem II3.93E-02
40GO:0019898: extrinsic component of membrane3.93E-02
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Gene type



Gene DE type