co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G79460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0000819: sister chromatid segregation	0.00E+00
5	GO:0061062: regulation of nematode larval development	1.02E-06
6	GO:0006351: transcription, DNA-templated	4.67E-05
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.44E-04
8	GO:0046506: sulfolipid biosynthetic process	1.44E-04
9	GO:0006426: glycyl-tRNA aminoacylation	1.44E-04
10	GO:0045786: negative regulation of cell cycle	1.44E-04
11	GO:0009887: animal organ morphogenesis	3.77E-04
12	GO:0006518: peptide metabolic process	5.40E-04
13	GO:0048575: short-day photoperiodism, flowering	5.40E-04
14	GO:0016556: mRNA modification	7.73E-04
15	GO:0010321: regulation of vegetative phase change	7.73E-04
16	GO:0007276: gamete generation	7.73E-04
17	GO:0006355: regulation of transcription, DNA-templated	8.80E-04
18	GO:0042991: transcription factor import into nucleus	1.02E-03
19	GO:0048629: trichome patterning	1.02E-03
20	GO:0048497: maintenance of floral organ identity	1.29E-03
21	GO:0009247: glycolipid biosynthetic process	1.29E-03
22	GO:0019760: glucosinolate metabolic process	1.50E-03
23	GO:0048364: root development	1.52E-03
24	GO:0010942: positive regulation of cell death	1.59E-03
25	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.59E-03
26	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.24E-03
27	GO:0000712: resolution of meiotic recombination intermediates	2.24E-03
28	GO:0045995: regulation of embryonic development	2.24E-03
29	GO:0007050: cell cycle arrest	2.24E-03
30	GO:0006811: ion transport	2.55E-03
31	GO:0042255: ribosome assembly	2.60E-03
32	GO:0006353: DNA-templated transcription, termination	2.60E-03
33	GO:0010492: maintenance of shoot apical meristem identity	2.60E-03
34	GO:0007186: G-protein coupled receptor signaling pathway	2.96E-03
35	GO:0010332: response to gamma radiation	3.35E-03
36	GO:0048589: developmental growth	3.35E-03
37	GO:0009416: response to light stimulus	3.42E-03
38	GO:1900865: chloroplast RNA modification	3.76E-03
39	GO:0031425: chloroplast RNA processing	3.76E-03
40	GO:0048366: leaf development	4.17E-03
41	GO:0006782: protoporphyrinogen IX biosynthetic process	4.18E-03
42	GO:0009641: shade avoidance	4.18E-03
43	GO:0006949: syncytium formation	4.18E-03
44	GO:0006259: DNA metabolic process	4.18E-03
45	GO:0008285: negative regulation of cell proliferation	4.61E-03
46	GO:0006265: DNA topological change	4.61E-03
47	GO:0009664: plant-type cell wall organization	4.70E-03
48	GO:0010152: pollen maturation	5.06E-03
49	GO:0006312: mitotic recombination	5.06E-03
50	GO:0012501: programmed cell death	5.06E-03
51	GO:0010102: lateral root morphogenesis	5.52E-03
52	GO:0045892: negative regulation of transcription, DNA-templated	5.70E-03
53	GO:0007034: vacuolar transport	6.00E-03
54	GO:0006302: double-strand break repair	6.00E-03
55	GO:0048768: root hair cell tip growth	6.00E-03
56	GO:0009969: xyloglucan biosynthetic process	6.50E-03
57	GO:0006863: purine nucleobase transport	7.00E-03
58	GO:0009624: response to nematode	7.18E-03
59	GO:0006874: cellular calcium ion homeostasis	8.06E-03
60	GO:0019953: sexual reproduction	8.06E-03
61	GO:0051321: meiotic cell cycle	8.61E-03
62	GO:0009686: gibberellin biosynthetic process	9.75E-03
63	GO:0048443: stamen development	1.03E-02
64	GO:0010091: trichome branching	1.03E-02
65	GO:0042127: regulation of cell proliferation	1.03E-02
66	GO:0000271: polysaccharide biosynthetic process	1.16E-02
67	GO:0009733: response to auxin	1.19E-02
68	GO:0045489: pectin biosynthetic process	1.22E-02
69	GO:0009958: positive gravitropism	1.22E-02
70	GO:0007059: chromosome segregation	1.28E-02
71	GO:0009908: flower development	1.33E-02
72	GO:0048825: cotyledon development	1.35E-02
73	GO:0009739: response to gibberellin	1.39E-02
74	GO:0071554: cell wall organization or biogenesis	1.41E-02
75	GO:0002229: defense response to oomycetes	1.41E-02
76	GO:0010583: response to cyclopentenone	1.48E-02
77	GO:0032502: developmental process	1.48E-02
78	GO:0030163: protein catabolic process	1.55E-02
79	GO:0009828: plant-type cell wall loosening	1.62E-02
80	GO:0009567: double fertilization forming a zygote and endosperm	1.62E-02
81	GO:0051301: cell division	1.69E-02
82	GO:0000910: cytokinesis	1.76E-02
83	GO:0016567: protein ubiquitination	1.77E-02
84	GO:0016126: sterol biosynthetic process	1.84E-02
85	GO:0009826: unidimensional cell growth	1.86E-02
86	GO:0015995: chlorophyll biosynthetic process	2.06E-02
87	GO:0048573: photoperiodism, flowering	2.06E-02
88	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.48E-02
89	GO:0016051: carbohydrate biosynthetic process	2.63E-02
90	GO:0006839: mitochondrial transport	2.88E-02
91	GO:0009736: cytokinin-activated signaling pathway	3.89E-02
92	GO:0030154: cell differentiation	4.06E-02
93	GO:0006417: regulation of translation	4.18E-02
94	GO:0048367: shoot system development	4.48E-02
95	GO:0009873: ethylene-activated signaling pathway	4.54E-02
96	GO:0009740: gibberellic acid mediated signaling pathway	4.78E-02
97	GO:0009734: auxin-activated signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0004820: glycine-tRNA ligase activity	1.44E-04
4	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.00E-04
5	GO:0017022: myosin binding	3.29E-04
6	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.29E-04
7	GO:0004109: coproporphyrinogen oxidase activity	3.29E-04
8	GO:0043565: sequence-specific DNA binding	6.09E-04
9	GO:0003916: DNA topoisomerase activity	7.73E-04
10	GO:0045544: gibberellin 20-oxidase activity	7.73E-04
11	GO:0004930: G-protein coupled receptor activity	1.02E-03
12	GO:0010011: auxin binding	1.02E-03
13	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.59E-03
14	GO:0030332: cyclin binding	1.59E-03
15	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.96E-03
16	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.35E-03
17	GO:0046983: protein dimerization activity	4.25E-03
18	GO:0008378: galactosyltransferase activity	5.06E-03
19	GO:0003677: DNA binding	5.70E-03
20	GO:0005217: intracellular ligand-gated ion channel activity	6.50E-03
21	GO:0003712: transcription cofactor activity	6.50E-03
22	GO:0004970: ionotropic glutamate receptor activity	6.50E-03
23	GO:0004190: aspartic-type endopeptidase activity	6.50E-03
24	GO:0005345: purine nucleobase transmembrane transporter activity	8.06E-03
25	GO:0008094: DNA-dependent ATPase activity	8.61E-03
26	GO:0008408: 3'-5' exonuclease activity	8.61E-03
27	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.17E-03
28	GO:0003727: single-stranded RNA binding	1.03E-02
29	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.22E-02
30	GO:0001085: RNA polymerase II transcription factor binding	1.22E-02
31	GO:0016853: isomerase activity	1.28E-02
32	GO:0004518: nuclease activity	1.48E-02
33	GO:0016413: O-acetyltransferase activity	1.76E-02
34	GO:0005096: GTPase activator activity	2.30E-02
35	GO:0004222: metalloendopeptidase activity	2.38E-02
36	GO:0030145: manganese ion binding	2.46E-02
37	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.46E-02
38	GO:0042803: protein homodimerization activity	3.00E-02
39	GO:0004871: signal transducer activity	3.00E-02
40	GO:0004722: protein serine/threonine phosphatase activity	3.14E-02
41	GO:0044212: transcription regulatory region DNA binding	3.66E-02
42	GO:0004519: endonuclease activity	3.83E-02
43	GO:0003690: double-stranded DNA binding	3.98E-02
44	GO:0003777: microtubule motor activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.44E-04
3	GO:0030870: Mre11 complex	3.29E-04
4	GO:0009531: secondary cell wall	7.73E-04
5	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.02E-03
6	GO:0000795: synaptonemal complex	1.29E-03
7	GO:0000815: ESCRT III complex	1.91E-03
8	GO:0009508: plastid chromosome	5.52E-03
9	GO:0005875: microtubule associated complex	7.00E-03
10	GO:0005654: nucleoplasm	8.75E-03
11	GO:0000785: chromatin	1.48E-02
12	GO:0009295: nucleoid	1.69E-02
13	GO:0005667: transcription factor complex	1.99E-02
14	GO:0015934: large ribosomal subunit	2.46E-02
15	GO:0005635: nuclear envelope	4.08E-02