co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78915

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015995: chlorophyll biosynthetic process	1.10E-06
2	GO:0019276: UDP-N-acetylgalactosamine metabolic process	6.74E-05
3	GO:0010028: xanthophyll cycle	6.74E-05
4	GO:0034337: RNA folding	6.74E-05
5	GO:0006047: UDP-N-acetylglucosamine metabolic process	6.74E-05
6	GO:0007093: mitotic cell cycle checkpoint	6.74E-05
7	GO:0009090: homoserine biosynthetic process	6.74E-05
8	GO:0031537: regulation of anthocyanin metabolic process	1.62E-04
9	GO:0051304: chromosome separation	1.62E-04
10	GO:0010353: response to trehalose	1.62E-04
11	GO:0016122: xanthophyll metabolic process	1.62E-04
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.62E-04
13	GO:0010270: photosystem II oxygen evolving complex assembly	1.62E-04
14	GO:0055114: oxidation-reduction process	1.68E-04
15	GO:0006000: fructose metabolic process	2.75E-04
16	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	2.75E-04
17	GO:0009067: aspartate family amino acid biosynthetic process	3.98E-04
18	GO:0006164: purine nucleotide biosynthetic process	3.98E-04
19	GO:0010021: amylopectin biosynthetic process	5.32E-04
20	GO:0006109: regulation of carbohydrate metabolic process	5.32E-04
21	GO:0015994: chlorophyll metabolic process	5.32E-04
22	GO:0006656: phosphatidylcholine biosynthetic process	6.73E-04
23	GO:0071368: cellular response to cytokinin stimulus	6.73E-04
24	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.23E-04
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.23E-04
26	GO:0006828: manganese ion transport	8.23E-04
27	GO:0080113: regulation of seed growth	9.79E-04
28	GO:0009088: threonine biosynthetic process	9.79E-04
29	GO:0080036: regulation of cytokinin-activated signaling pathway	9.79E-04
30	GO:1901259: chloroplast rRNA processing	9.79E-04
31	GO:0009610: response to symbiotic fungus	1.14E-03
32	GO:0010196: nonphotochemical quenching	1.14E-03
33	GO:0000105: histidine biosynthetic process	1.32E-03
34	GO:0005978: glycogen biosynthetic process	1.32E-03
35	GO:0009642: response to light intensity	1.32E-03
36	GO:0015979: photosynthesis	1.44E-03
37	GO:0006002: fructose 6-phosphate metabolic process	1.50E-03
38	GO:0015996: chlorophyll catabolic process	1.50E-03
39	GO:0006783: heme biosynthetic process	1.69E-03
40	GO:0006189: 'de novo' IMP biosynthetic process	1.69E-03
41	GO:0032259: methylation	1.89E-03
42	GO:0005982: starch metabolic process	1.89E-03
43	GO:0009086: methionine biosynthetic process	1.89E-03
44	GO:0010380: regulation of chlorophyll biosynthetic process	1.89E-03
45	GO:0042761: very long-chain fatty acid biosynthetic process	1.89E-03
46	GO:0009641: shade avoidance	2.10E-03
47	GO:0006782: protoporphyrinogen IX biosynthetic process	2.10E-03
48	GO:0006816: calcium ion transport	2.31E-03
49	GO:0009773: photosynthetic electron transport in photosystem I	2.31E-03
50	GO:0009089: lysine biosynthetic process via diaminopimelate	2.31E-03
51	GO:0043085: positive regulation of catalytic activity	2.31E-03
52	GO:0005983: starch catabolic process	2.53E-03
53	GO:0018107: peptidyl-threonine phosphorylation	2.76E-03
54	GO:0006094: gluconeogenesis	2.76E-03
55	GO:0005986: sucrose biosynthetic process	2.76E-03
56	GO:0010223: secondary shoot formation	2.99E-03
57	GO:0019253: reductive pentose-phosphate cycle	2.99E-03
58	GO:0005985: sucrose metabolic process	3.23E-03
59	GO:0006636: unsaturated fatty acid biosynthetic process	3.48E-03
60	GO:0009735: response to cytokinin	3.67E-03
61	GO:0009768: photosynthesis, light harvesting in photosystem I	3.99E-03
62	GO:0006418: tRNA aminoacylation for protein translation	3.99E-03
63	GO:0051260: protein homooligomerization	4.26E-03
64	GO:0061077: chaperone-mediated protein folding	4.26E-03
65	GO:0016114: terpenoid biosynthetic process	4.26E-03
66	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.81E-03
67	GO:0010082: regulation of root meristem growth	4.81E-03
68	GO:0080022: primary root development	5.68E-03
69	GO:0006662: glycerol ether metabolic process	5.98E-03
70	GO:0019252: starch biosynthetic process	6.60E-03
71	GO:1901657: glycosyl compound metabolic process	7.57E-03
72	GO:0009828: plant-type cell wall loosening	7.90E-03
73	GO:0044550: secondary metabolite biosynthetic process	9.32E-03
74	GO:0006906: vesicle fusion	9.65E-03
75	GO:0045454: cell redox homeostasis	1.03E-02
76	GO:0000160: phosphorelay signal transduction system	1.11E-02
77	GO:0009813: flavonoid biosynthetic process	1.11E-02
78	GO:0007568: aging	1.19E-02
79	GO:0009631: cold acclimation	1.19E-02
80	GO:0009408: response to heat	1.27E-02
81	GO:0034599: cellular response to oxidative stress	1.31E-02
82	GO:0008152: metabolic process	1.40E-02
83	GO:0006887: exocytosis	1.44E-02
84	GO:0006631: fatty acid metabolic process	1.44E-02
85	GO:0009734: auxin-activated signaling pathway	1.79E-02
86	GO:0009664: plant-type cell wall organization	1.79E-02
87	GO:0006813: potassium ion transport	1.88E-02
88	GO:0009736: cytokinin-activated signaling pathway	1.88E-02
89	GO:0010224: response to UV-B	1.93E-02
90	GO:0043086: negative regulation of catalytic activity	2.12E-02
91	GO:0048367: shoot system development	2.17E-02
92	GO:0009553: embryo sac development	2.37E-02
93	GO:0018105: peptidyl-serine phosphorylation	2.47E-02
94	GO:0016310: phosphorylation	3.12E-02
95	GO:0006633: fatty acid biosynthetic process	3.33E-02
96	GO:0009826: unidimensional cell growth	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0004567: beta-mannosidase activity	0.00E+00
9	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
10	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
11	GO:0080082: esculin beta-glucosidase activity	0.00E+00
12	GO:0004033: aldo-keto reductase (NADP) activity	3.06E-05
13	GO:0034256: chlorophyll(ide) b reductase activity	6.74E-05
14	GO:0003879: ATP phosphoribosyltransferase activity	6.74E-05
15	GO:0045486: naringenin 3-dioxygenase activity	6.74E-05
16	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	6.74E-05
17	GO:0080079: cellobiose glucosidase activity	6.74E-05
18	GO:0050521: alpha-glucan, water dikinase activity	6.74E-05
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	6.74E-05
20	GO:0004853: uroporphyrinogen decarboxylase activity	6.74E-05
21	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	6.74E-05
22	GO:0016491: oxidoreductase activity	1.23E-04
23	GO:0000234: phosphoethanolamine N-methyltransferase activity	1.62E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.62E-04
25	GO:0004412: homoserine dehydrogenase activity	1.62E-04
26	GO:0008967: phosphoglycolate phosphatase activity	1.62E-04
27	GO:0018708: thiol S-methyltransferase activity	1.62E-04
28	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.62E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.75E-04
30	GO:0043169: cation binding	2.75E-04
31	GO:0004072: aspartate kinase activity	3.98E-04
32	GO:0019201: nucleotide kinase activity	3.98E-04
33	GO:0016851: magnesium chelatase activity	3.98E-04
34	GO:0005524: ATP binding	7.36E-04
35	GO:0004602: glutathione peroxidase activity	9.79E-04
36	GO:0004017: adenylate kinase activity	9.79E-04
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.50E-03
38	GO:0071949: FAD binding	1.69E-03
39	GO:0005384: manganese ion transmembrane transporter activity	1.89E-03
40	GO:0008047: enzyme activator activity	2.10E-03
41	GO:0047372: acylglycerol lipase activity	2.31E-03
42	GO:0015386: potassium:proton antiporter activity	2.31E-03
43	GO:0015095: magnesium ion transmembrane transporter activity	2.76E-03
44	GO:0031072: heat shock protein binding	2.76E-03
45	GO:0004535: poly(A)-specific ribonuclease activity	2.99E-03
46	GO:0031409: pigment binding	3.48E-03
47	GO:0031418: L-ascorbic acid binding	3.73E-03
48	GO:0004857: enzyme inhibitor activity	3.73E-03
49	GO:0005528: FK506 binding	3.73E-03
50	GO:0015079: potassium ion transmembrane transporter activity	3.99E-03
51	GO:0016779: nucleotidyltransferase activity	4.53E-03
52	GO:0047134: protein-disulfide reductase activity	5.38E-03
53	GO:0004812: aminoacyl-tRNA ligase activity	5.38E-03
54	GO:0005249: voltage-gated potassium channel activity	5.68E-03
55	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.68E-03
56	GO:0004791: thioredoxin-disulfide reductase activity	6.28E-03
57	GO:0016787: hydrolase activity	6.63E-03
58	GO:0008168: methyltransferase activity	6.65E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.57E-03
60	GO:0000156: phosphorelay response regulator activity	7.57E-03
61	GO:0016597: amino acid binding	8.59E-03
62	GO:0016168: chlorophyll binding	9.29E-03
63	GO:0102483: scopolin beta-glucosidase activity	1.00E-02
64	GO:0003746: translation elongation factor activity	1.27E-02
65	GO:0003993: acid phosphatase activity	1.31E-02
66	GO:0000149: SNARE binding	1.35E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.35E-02
68	GO:0008422: beta-glucosidase activity	1.35E-02
69	GO:0050661: NADP binding	1.39E-02
70	GO:0005484: SNAP receptor activity	1.52E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	1.61E-02
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.70E-02
73	GO:0051082: unfolded protein binding	2.42E-02
74	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
75	GO:0019843: rRNA binding	2.84E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.98E-02
78	GO:0005525: GTP binding	3.71E-02
79	GO:0042802: identical protein binding	4.23E-02
80	GO:0005506: iron ion binding	4.48E-02
81	GO:0044212: transcription regulatory region DNA binding	4.55E-02
82	GO:0000287: magnesium ion binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.68E-21
2	GO:0009570: chloroplast stroma	6.36E-12
3	GO:0009535: chloroplast thylakoid membrane	1.91E-11
4	GO:0009941: chloroplast envelope	2.23E-07
5	GO:0009534: chloroplast thylakoid	1.16E-06
6	GO:0042651: thylakoid membrane	2.09E-04
7	GO:0010007: magnesium chelatase complex	2.75E-04
8	GO:0010287: plastoglobule	3.38E-04
9	GO:0008076: voltage-gated potassium channel complex	3.98E-04
10	GO:0031969: chloroplast membrane	1.22E-03
11	GO:0031977: thylakoid lumen	1.28E-03
12	GO:0009501: amyloplast	1.32E-03
13	GO:0031901: early endosome membrane	1.69E-03
14	GO:0032040: small-subunit processome	2.53E-03
15	GO:0009706: chloroplast inner membrane	2.61E-03
16	GO:0030095: chloroplast photosystem II	2.99E-03
17	GO:0030076: light-harvesting complex	3.23E-03
18	GO:0009543: chloroplast thylakoid lumen	3.25E-03
19	GO:0005875: microtubule associated complex	3.48E-03
20	GO:0010319: stromule	8.24E-03
21	GO:0031201: SNARE complex	1.44E-02
22	GO:0005623: cell	2.89E-02
23	GO:0016020: membrane	3.63E-02