Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G78790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0070979: protein K11-linked ubiquitination0.00E+00
3GO:0019323: pentose catabolic process0.00E+00
4GO:0001778: plasma membrane repair0.00E+00
5GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
7GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
8GO:0044262: cellular carbohydrate metabolic process4.18E-05
9GO:0009090: homoserine biosynthetic process4.18E-05
10GO:1900033: negative regulation of trichome patterning1.04E-04
11GO:0046740: transport of virus in host, cell to cell1.04E-04
12GO:1900871: chloroplast mRNA modification1.04E-04
13GO:0031145: anaphase-promoting complex-dependent catabolic process1.78E-04
14GO:0006696: ergosterol biosynthetic process1.78E-04
15GO:0009067: aspartate family amino acid biosynthetic process2.63E-04
16GO:0030071: regulation of mitotic metaphase/anaphase transition2.63E-04
17GO:0032456: endocytic recycling2.63E-04
18GO:1990019: protein storage vacuole organization2.63E-04
19GO:0009052: pentose-phosphate shunt, non-oxidative branch2.63E-04
20GO:0006612: protein targeting to membrane2.63E-04
21GO:0009755: hormone-mediated signaling pathway3.53E-04
22GO:0048629: trichome patterning3.53E-04
23GO:0048442: sepal development3.53E-04
24GO:0008295: spermidine biosynthetic process3.53E-04
25GO:0010438: cellular response to sulfur starvation4.50E-04
26GO:0032876: negative regulation of DNA endoreduplication4.50E-04
27GO:0009088: threonine biosynthetic process6.58E-04
28GO:0031930: mitochondria-nucleus signaling pathway6.58E-04
29GO:0009612: response to mechanical stimulus6.58E-04
30GO:0010076: maintenance of floral meristem identity6.58E-04
31GO:0032875: regulation of DNA endoreduplication8.84E-04
32GO:2000070: regulation of response to water deprivation8.84E-04
33GO:0009819: drought recovery8.84E-04
34GO:0070413: trehalose metabolism in response to stress8.84E-04
35GO:0010439: regulation of glucosinolate biosynthetic process8.84E-04
36GO:0032544: plastid translation1.00E-03
37GO:0009657: plastid organization1.00E-03
38GO:0009585: red, far-red light phototransduction1.01E-03
39GO:0000373: Group II intron splicing1.13E-03
40GO:0009638: phototropism1.25E-03
41GO:0010018: far-red light signaling pathway1.25E-03
42GO:0009086: methionine biosynthetic process1.25E-03
43GO:1900865: chloroplast RNA modification1.25E-03
44GO:0048441: petal development1.39E-03
45GO:0009299: mRNA transcription1.39E-03
46GO:0009682: induced systemic resistance1.53E-03
47GO:0006415: translational termination1.53E-03
48GO:0009089: lysine biosynthetic process via diaminopimelate1.53E-03
49GO:0010105: negative regulation of ethylene-activated signaling pathway1.67E-03
50GO:0009725: response to hormone1.82E-03
51GO:0048440: carpel development1.97E-03
52GO:0042753: positive regulation of circadian rhythm2.29E-03
53GO:0005992: trehalose biosynthetic process2.46E-03
54GO:0080147: root hair cell development2.46E-03
55GO:0010431: seed maturation2.80E-03
56GO:0010017: red or far-red light signaling pathway2.97E-03
57GO:0009625: response to insect3.15E-03
58GO:0048443: stamen development3.33E-03
59GO:0016117: carotenoid biosynthetic process3.52E-03
60GO:0010087: phloem or xylem histogenesis3.71E-03
61GO:0009958: positive gravitropism3.91E-03
62GO:0000302: response to reactive oxygen species4.51E-03
63GO:0071554: cell wall organization or biogenesis4.51E-03
64GO:0007264: small GTPase mediated signal transduction4.72E-03
65GO:0016032: viral process4.72E-03
66GO:0006464: cellular protein modification process5.15E-03
67GO:0009639: response to red or far red light5.15E-03
68GO:0009615: response to virus5.81E-03
69GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.04E-03
70GO:0010218: response to far red light7.47E-03
71GO:0009867: jasmonic acid mediated signaling pathway8.23E-03
72GO:0034599: cellular response to oxidative stress8.48E-03
73GO:0006357: regulation of transcription from RNA polymerase II promoter8.99E-03
74GO:0006897: endocytosis9.28E-03
75GO:0010114: response to red light9.82E-03
76GO:0008283: cell proliferation9.82E-03
77GO:0009644: response to high light intensity1.04E-02
78GO:0000165: MAPK cascade1.12E-02
79GO:0048316: seed development1.39E-02
80GO:0009740: gibberellic acid mediated signaling pathway1.49E-02
81GO:0009624: response to nematode1.55E-02
82GO:0006396: RNA processing1.59E-02
83GO:0009742: brassinosteroid mediated signaling pathway1.62E-02
84GO:0009845: seed germination1.93E-02
85GO:0042744: hydrogen peroxide catabolic process2.00E-02
86GO:0040008: regulation of growth2.22E-02
87GO:0009451: RNA modification2.33E-02
88GO:0009739: response to gibberellin2.48E-02
89GO:0009617: response to bacterium2.60E-02
90GO:0030154: cell differentiation2.67E-02
91GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.96E-02
92GO:0009826: unidimensional cell growth3.05E-02
93GO:0009409: response to cold3.32E-02
94GO:0009751: response to salicylic acid4.76E-02
95GO:0006397: mRNA processing4.96E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0016776: phosphotransferase activity, phosphate group as acceptor4.18E-05
4GO:0051996: squalene synthase activity4.18E-05
5GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.04E-04
6GO:0017118: lipoyltransferase activity1.04E-04
7GO:0043425: bHLH transcription factor binding1.04E-04
8GO:0004766: spermidine synthase activity1.04E-04
9GO:0004750: ribulose-phosphate 3-epimerase activity1.04E-04
10GO:0004412: homoserine dehydrogenase activity1.04E-04
11GO:1901981: phosphatidylinositol phosphate binding1.04E-04
12GO:0016149: translation release factor activity, codon specific2.63E-04
13GO:0004072: aspartate kinase activity2.63E-04
14GO:0016688: L-ascorbate peroxidase activity5.51E-04
15GO:0004130: cytochrome-c peroxidase activity5.51E-04
16GO:0003747: translation release factor activity1.13E-03
17GO:0004805: trehalose-phosphatase activity1.39E-03
18GO:0009982: pseudouridine synthase activity1.82E-03
19GO:0003964: RNA-directed DNA polymerase activity2.80E-03
20GO:0044212: transcription regulatory region DNA binding4.54E-03
21GO:0016791: phosphatase activity5.15E-03
22GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting5.51E-03
23GO:0016413: O-acetyltransferase activity5.59E-03
24GO:0016597: amino acid binding5.59E-03
25GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding6.13E-03
26GO:0004721: phosphoprotein phosphatase activity6.50E-03
27GO:0050661: NADP binding9.01E-03
28GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.00E-02
29GO:0004601: peroxidase activity3.13E-02
30GO:0046983: protein dimerization activity3.27E-02
31GO:0005515: protein binding4.38E-02
32GO:0003924: GTPase activity4.81E-02
RankGO TermAdjusted P value
1GO:0032541: cortical endoplasmic reticulum4.18E-05
2GO:0009898: cytoplasmic side of plasma membrane3.53E-04
3GO:0009501: amyloplast8.84E-04
4GO:0005680: anaphase-promoting complex1.13E-03
5GO:0016604: nuclear body1.25E-03
6GO:0009508: plastid chromosome1.82E-03
7GO:0010319: stromule5.36E-03
8GO:0009295: nucleoid5.36E-03
9GO:0009570: chloroplast stroma1.38E-02
10GO:0010008: endosome membrane1.39E-02
11GO:0012505: endomembrane system1.52E-02
12GO:0010287: plastoglobule1.76E-02
13GO:0009507: chloroplast1.84E-02
14GO:0009536: plastid3.01E-02
15GO:0031969: chloroplast membrane3.65E-02
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Gene type



Gene DE type