co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006573: valine metabolic process	0.00E+00
2	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:0070979: protein K11-linked ubiquitination	0.00E+00
7	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:1900871: chloroplast mRNA modification	8.92E-07
9	GO:0009416: response to light stimulus	1.35E-05
10	GO:0043266: regulation of potassium ion transport	1.33E-04
11	GO:0010063: positive regulation of trichoblast fate specification	1.33E-04
12	GO:0006551: leucine metabolic process	1.33E-04
13	GO:2000021: regulation of ion homeostasis	1.33E-04
14	GO:0070574: cadmium ion transmembrane transport	1.33E-04
15	GO:0051247: positive regulation of protein metabolic process	1.33E-04
16	GO:2000905: negative regulation of starch metabolic process	1.33E-04
17	GO:0030187: melatonin biosynthetic process	3.07E-04
18	GO:0006432: phenylalanyl-tRNA aminoacylation	3.07E-04
19	GO:0000256: allantoin catabolic process	3.07E-04
20	GO:1904143: positive regulation of carotenoid biosynthetic process	3.07E-04
21	GO:0001682: tRNA 5'-leader removal	3.07E-04
22	GO:0006568: tryptophan metabolic process	3.07E-04
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.07E-04
24	GO:0009405: pathogenesis	5.06E-04
25	GO:0048586: regulation of long-day photoperiodism, flowering	5.06E-04
26	GO:0010136: ureide catabolic process	5.06E-04
27	GO:0031145: anaphase-promoting complex-dependent catabolic process	5.06E-04
28	GO:0005977: glycogen metabolic process	5.06E-04
29	GO:0033591: response to L-ascorbic acid	5.06E-04
30	GO:0009738: abscisic acid-activated signaling pathway	5.88E-04
31	GO:0016556: mRNA modification	7.24E-04
32	GO:0046739: transport of virus in multicellular host	7.24E-04
33	GO:2000904: regulation of starch metabolic process	7.24E-04
34	GO:0090308: regulation of methylation-dependent chromatin silencing	7.24E-04
35	GO:0010071: root meristem specification	7.24E-04
36	GO:0030071: regulation of mitotic metaphase/anaphase transition	7.24E-04
37	GO:0006145: purine nucleobase catabolic process	7.24E-04
38	GO:0009741: response to brassinosteroid	9.22E-04
39	GO:0008295: spermidine biosynthetic process	9.59E-04
40	GO:0010021: amylopectin biosynthetic process	9.59E-04
41	GO:0042274: ribosomal small subunit biogenesis	9.59E-04
42	GO:0048442: sepal development	9.59E-04
43	GO:2000306: positive regulation of photomorphogenesis	9.59E-04
44	GO:0080110: sporopollenin biosynthetic process	1.21E-03
45	GO:0016131: brassinosteroid metabolic process	1.21E-03
46	GO:0045038: protein import into chloroplast thylakoid membrane	1.21E-03
47	GO:0032876: negative regulation of DNA endoreduplication	1.21E-03
48	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.49E-03
49	GO:0010190: cytochrome b6f complex assembly	1.49E-03
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.49E-03
51	GO:0010029: regulation of seed germination	1.70E-03
52	GO:1901259: chloroplast rRNA processing	1.78E-03
53	GO:0010076: maintenance of floral meristem identity	1.78E-03
54	GO:0009082: branched-chain amino acid biosynthetic process	1.78E-03
55	GO:0009099: valine biosynthetic process	1.78E-03
56	GO:0010189: vitamin E biosynthetic process	1.78E-03
57	GO:0071470: cellular response to osmotic stress	1.78E-03
58	GO:0048437: floral organ development	2.09E-03
59	GO:0006875: cellular metal ion homeostasis	2.42E-03
60	GO:0032875: regulation of DNA endoreduplication	2.42E-03
61	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.42E-03
62	GO:0009097: isoleucine biosynthetic process	2.77E-03
63	GO:0032544: plastid translation	2.77E-03
64	GO:0009658: chloroplast organization	2.98E-03
65	GO:0000373: Group II intron splicing	3.13E-03
66	GO:0000902: cell morphogenesis	3.13E-03
67	GO:0009098: leucine biosynthetic process	3.50E-03
68	GO:1900865: chloroplast RNA modification	3.50E-03
69	GO:0048441: petal development	3.89E-03
70	GO:0043085: positive regulation of catalytic activity	4.30E-03
71	GO:0010216: maintenance of DNA methylation	4.30E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	5.15E-03
73	GO:0048440: carpel development	5.60E-03
74	GO:0019853: L-ascorbic acid biosynthetic process	6.06E-03
75	GO:0019762: glucosinolate catabolic process	6.53E-03
76	GO:0005992: trehalose biosynthetic process	7.01E-03
77	GO:0008299: isoprenoid biosynthetic process	7.51E-03
78	GO:0006012: galactose metabolic process	9.08E-03
79	GO:0042127: regulation of cell proliferation	9.63E-03
80	GO:0010584: pollen exine formation	9.63E-03
81	GO:0048443: stamen development	9.63E-03
82	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.02E-02
83	GO:0008033: tRNA processing	1.08E-02
84	GO:0010087: phloem or xylem histogenesis	1.08E-02
85	GO:0071472: cellular response to salt stress	1.13E-02
86	GO:0010305: leaf vascular tissue pattern formation	1.13E-02
87	GO:0006662: glycerol ether metabolic process	1.13E-02
88	GO:0010268: brassinosteroid homeostasis	1.13E-02
89	GO:0009451: RNA modification	1.15E-02
90	GO:0009646: response to absence of light	1.19E-02
91	GO:0019252: starch biosynthetic process	1.25E-02
92	GO:0008654: phospholipid biosynthetic process	1.25E-02
93	GO:0055072: iron ion homeostasis	1.25E-02
94	GO:0007166: cell surface receptor signaling pathway	1.28E-02
95	GO:0016032: viral process	1.38E-02
96	GO:0032502: developmental process	1.38E-02
97	GO:0007264: small GTPase mediated signal transduction	1.38E-02
98	GO:0006464: cellular protein modification process	1.51E-02
99	GO:0046686: response to cadmium ion	1.66E-02
100	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.78E-02
101	GO:0006970: response to osmotic stress	1.88E-02
102	GO:0015995: chlorophyll biosynthetic process	1.92E-02
103	GO:0048481: plant ovule development	2.06E-02
104	GO:0034599: cellular response to oxidative stress	2.52E-02
105	GO:0045454: cell redox homeostasis	2.59E-02
106	GO:0030001: metal ion transport	2.68E-02
107	GO:0006631: fatty acid metabolic process	2.76E-02
108	GO:0008283: cell proliferation	2.92E-02
109	GO:0008643: carbohydrate transport	3.09E-02
110	GO:0009644: response to high light intensity	3.09E-02
111	GO:0000165: MAPK cascade	3.35E-02
112	GO:0042538: hyperosmotic salinity response	3.44E-02
113	GO:0006364: rRNA processing	3.62E-02
114	GO:0006857: oligopeptide transport	3.80E-02
115	GO:0009909: regulation of flower development	3.89E-02
116	GO:0055114: oxidation-reduction process	4.08E-02
117	GO:0048316: seed development	4.17E-02
118	GO:0048367: shoot system development	4.17E-02
119	GO:0016569: covalent chromatin modification	4.45E-02
120	GO:0009740: gibberellic acid mediated signaling pathway	4.45E-02
121	GO:0006396: RNA processing	4.74E-02
122	GO:0009742: brassinosteroid mediated signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0003984: acetolactate synthase activity	1.33E-04
7	GO:0008395: steroid hydroxylase activity	1.33E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.33E-04
9	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.33E-04
10	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.33E-04
11	GO:0004826: phenylalanine-tRNA ligase activity	3.07E-04
12	GO:0019156: isoamylase activity	3.07E-04
13	GO:0003862: 3-isopropylmalate dehydrogenase activity	3.07E-04
14	GO:0017118: lipoyltransferase activity	3.07E-04
15	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.07E-04
16	GO:0004766: spermidine synthase activity	3.07E-04
17	GO:0004848: ureidoglycolate hydrolase activity	5.06E-04
18	GO:0004148: dihydrolipoyl dehydrogenase activity	5.06E-04
19	GO:0070402: NADPH binding	5.06E-04
20	GO:0015086: cadmium ion transmembrane transporter activity	7.24E-04
21	GO:0008080: N-acetyltransferase activity	9.22E-04
22	GO:0080032: methyl jasmonate esterase activity	9.59E-04
23	GO:0052793: pectin acetylesterase activity	9.59E-04
24	GO:0004556: alpha-amylase activity	1.49E-03
25	GO:0004462: lactoylglutathione lyase activity	1.49E-03
26	GO:0008200: ion channel inhibitor activity	1.49E-03
27	GO:2001070: starch binding	1.49E-03
28	GO:0004605: phosphatidate cytidylyltransferase activity	1.49E-03
29	GO:0080030: methyl indole-3-acetate esterase activity	1.49E-03
30	GO:0004526: ribonuclease P activity	1.49E-03
31	GO:0008195: phosphatidate phosphatase activity	1.78E-03
32	GO:0015103: inorganic anion transmembrane transporter activity	2.09E-03
33	GO:0004033: aldo-keto reductase (NADP) activity	2.42E-03
34	GO:0043022: ribosome binding	2.42E-03
35	GO:0004805: trehalose-phosphatase activity	3.89E-03
36	GO:0030234: enzyme regulator activity	3.89E-03
37	GO:0008047: enzyme activator activity	3.89E-03
38	GO:0000049: tRNA binding	4.72E-03
39	GO:0003690: double-stranded DNA binding	4.72E-03
40	GO:0009982: pseudouridine synthase activity	5.15E-03
41	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.60E-03
42	GO:0004519: endonuclease activity	7.13E-03
43	GO:0008514: organic anion transmembrane transporter activity	9.63E-03
44	GO:0047134: protein-disulfide reductase activity	1.02E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.05E-02
46	GO:0003723: RNA binding	1.09E-02
47	GO:0046873: metal ion transmembrane transporter activity	1.13E-02
48	GO:0050662: coenzyme binding	1.19E-02
49	GO:0004791: thioredoxin-disulfide reductase activity	1.19E-02
50	GO:0016853: isomerase activity	1.19E-02
51	GO:0019901: protein kinase binding	1.25E-02
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.44E-02
53	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.57E-02
54	GO:0008237: metallopeptidase activity	1.57E-02
55	GO:0016597: amino acid binding	1.64E-02
56	GO:0004721: phosphoprotein phosphatase activity	1.92E-02
57	GO:0004222: metalloendopeptidase activity	2.21E-02
58	GO:0050897: cobalt ion binding	2.29E-02
59	GO:0030145: manganese ion binding	2.29E-02
60	GO:0003993: acid phosphatase activity	2.52E-02
61	GO:0051287: NAD binding	3.35E-02
62	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.17E-02
63	GO:0016874: ligase activity	4.45E-02
64	GO:0015035: protein disulfide oxidoreductase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	5.01E-11
4	GO:0009570: chloroplast stroma	7.47E-05
5	GO:0043036: starch grain	3.07E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	3.07E-04
7	GO:0009501: amyloplast	2.42E-03
8	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.77E-03
9	GO:0005720: nuclear heterochromatin	3.13E-03
10	GO:0005680: anaphase-promoting complex	3.13E-03
11	GO:0016604: nuclear body	3.50E-03
12	GO:0048471: perinuclear region of cytoplasm	4.30E-03
13	GO:0009508: plastid chromosome	5.15E-03
14	GO:0043231: intracellular membrane-bounded organelle	7.26E-03
15	GO:0042651: thylakoid membrane	7.51E-03
16	GO:0005759: mitochondrial matrix	1.02E-02
17	GO:0009705: plant-type vacuole membrane	1.12E-02
18	GO:0009536: plastid	1.16E-02
19	GO:0009295: nucleoid	1.57E-02
20	GO:0005747: mitochondrial respiratory chain complex I	4.17E-02
21	GO:0012505: endomembrane system	4.55E-02
22	GO:0009706: chloroplast inner membrane	4.65E-02