co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0010203: response to very low fluence red light stimulus	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0033528: S-methylmethionine cycle	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0051510: regulation of unidimensional cell growth	1.88E-04
11	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.55E-04
12	GO:0043087: regulation of GTPase activity	2.55E-04
13	GO:2000021: regulation of ion homeostasis	2.55E-04
14	GO:0006436: tryptophanyl-tRNA aminoacylation	2.55E-04
15	GO:0090548: response to nitrate starvation	2.55E-04
16	GO:0000066: mitochondrial ornithine transport	2.55E-04
17	GO:0006419: alanyl-tRNA aminoacylation	2.55E-04
18	GO:0015969: guanosine tetraphosphate metabolic process	2.55E-04
19	GO:1902025: nitrate import	2.55E-04
20	GO:0000012: single strand break repair	2.55E-04
21	GO:0043266: regulation of potassium ion transport	2.55E-04
22	GO:0010080: regulation of floral meristem growth	2.55E-04
23	GO:0042547: cell wall modification involved in multidimensional cell growth	2.55E-04
24	GO:0015798: myo-inositol transport	2.55E-04
25	GO:0072387: flavin adenine dinucleotide metabolic process	2.55E-04
26	GO:0000373: Group II intron splicing	3.55E-04
27	GO:0009638: phototropism	4.21E-04
28	GO:0010343: singlet oxygen-mediated programmed cell death	5.64E-04
29	GO:1901529: positive regulation of anion channel activity	5.64E-04
30	GO:0043255: regulation of carbohydrate biosynthetic process	5.64E-04
31	GO:1900871: chloroplast mRNA modification	5.64E-04
32	GO:0010617: circadian regulation of calcium ion oscillation	5.64E-04
33	GO:0006435: threonyl-tRNA aminoacylation	5.64E-04
34	GO:0099402: plant organ development	5.64E-04
35	GO:0010207: photosystem II assembly	8.30E-04
36	GO:0005977: glycogen metabolic process	9.15E-04
37	GO:1902448: positive regulation of shade avoidance	9.15E-04
38	GO:0010022: meristem determinacy	9.15E-04
39	GO:1901672: positive regulation of systemic acquired resistance	9.15E-04
40	GO:0017006: protein-tetrapyrrole linkage	9.15E-04
41	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.15E-04
42	GO:0010623: programmed cell death involved in cell development	9.15E-04
43	GO:0006696: ergosterol biosynthetic process	9.15E-04
44	GO:0090351: seedling development	9.26E-04
45	GO:2001141: regulation of RNA biosynthetic process	1.31E-03
46	GO:0046836: glycolipid transport	1.31E-03
47	GO:0009584: detection of visible light	1.31E-03
48	GO:0009226: nucleotide-sugar biosynthetic process	1.31E-03
49	GO:0042989: sequestering of actin monomers	1.31E-03
50	GO:1901332: negative regulation of lateral root development	1.31E-03
51	GO:0048442: sepal development	1.75E-03
52	GO:0051322: anaphase	1.75E-03
53	GO:0006661: phosphatidylinositol biosynthetic process	1.75E-03
54	GO:0010508: positive regulation of autophagy	1.75E-03
55	GO:0008295: spermidine biosynthetic process	1.75E-03
56	GO:1902347: response to strigolactone	1.75E-03
57	GO:0010021: amylopectin biosynthetic process	1.75E-03
58	GO:0016117: carotenoid biosynthetic process	1.92E-03
59	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.92E-03
60	GO:0009658: chloroplast organization	1.98E-03
61	GO:0009793: embryo development ending in seed dormancy	2.03E-03
62	GO:1902183: regulation of shoot apical meristem development	2.23E-03
63	GO:0016123: xanthophyll biosynthetic process	2.23E-03
64	GO:0010158: abaxial cell fate specification	2.23E-03
65	GO:0030041: actin filament polymerization	2.23E-03
66	GO:0010117: photoprotection	2.23E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	2.23E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	2.23E-03
69	GO:0046323: glucose import	2.24E-03
70	GO:0045489: pectin biosynthetic process	2.24E-03
71	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.75E-03
72	GO:0060918: auxin transport	2.75E-03
73	GO:1901371: regulation of leaf morphogenesis	2.75E-03
74	GO:0007264: small GTPase mediated signal transduction	2.94E-03
75	GO:0009854: oxidative photosynthetic carbon pathway	3.30E-03
76	GO:0010310: regulation of hydrogen peroxide metabolic process	3.30E-03
77	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.30E-03
78	GO:0010076: maintenance of floral meristem identity	3.30E-03
79	GO:0017148: negative regulation of translation	3.30E-03
80	GO:0010161: red light signaling pathway	3.89E-03
81	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.89E-03
82	GO:0006400: tRNA modification	3.89E-03
83	GO:0016126: sterol biosynthetic process	3.97E-03
84	GO:0045010: actin nucleation	4.52E-03
85	GO:0000105: histidine biosynthetic process	4.52E-03
86	GO:0048564: photosystem I assembly	4.52E-03
87	GO:0042255: ribosome assembly	4.52E-03
88	GO:0006353: DNA-templated transcription, termination	4.52E-03
89	GO:0070413: trehalose metabolism in response to stress	4.52E-03
90	GO:0071482: cellular response to light stimulus	5.18E-03
91	GO:0022900: electron transport chain	5.18E-03
92	GO:0009827: plant-type cell wall modification	5.18E-03
93	GO:0009657: plastid organization	5.18E-03
94	GO:0030244: cellulose biosynthetic process	5.18E-03
95	GO:0018298: protein-chromophore linkage	5.18E-03
96	GO:0009834: plant-type secondary cell wall biogenesis	5.71E-03
97	GO:0010218: response to far red light	5.71E-03
98	GO:0046685: response to arsenic-containing substance	5.86E-03
99	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.86E-03
100	GO:0010206: photosystem II repair	5.86E-03
101	GO:2000024: regulation of leaf development	5.86E-03
102	GO:0009637: response to blue light	6.56E-03
103	GO:0009853: photorespiration	6.56E-03
104	GO:1900426: positive regulation of defense response to bacterium	6.58E-03
105	GO:0009086: methionine biosynthetic process	6.58E-03
106	GO:0008202: steroid metabolic process	6.58E-03
107	GO:0006259: DNA metabolic process	7.33E-03
108	GO:0048441: petal development	7.33E-03
109	GO:0006265: DNA topological change	8.11E-03
110	GO:0006415: translational termination	8.11E-03
111	GO:0006352: DNA-templated transcription, initiation	8.11E-03
112	GO:0010114: response to red light	8.47E-03
113	GO:0009640: photomorphogenesis	8.47E-03
114	GO:0042546: cell wall biogenesis	8.81E-03
115	GO:0045037: protein import into chloroplast stroma	8.92E-03
116	GO:0010582: floral meristem determinacy	8.92E-03
117	GO:0030036: actin cytoskeleton organization	9.75E-03
118	GO:0010075: regulation of meristem growth	9.75E-03
119	GO:0006094: gluconeogenesis	9.75E-03
120	GO:0009767: photosynthetic electron transport chain	9.75E-03
121	GO:0009785: blue light signaling pathway	9.75E-03
122	GO:0006302: double-strand break repair	1.06E-02
123	GO:0048440: carpel development	1.06E-02
124	GO:0071555: cell wall organization	1.08E-02
125	GO:0009833: plant-type primary cell wall biogenesis	1.24E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	1.34E-02
127	GO:0005992: trehalose biosynthetic process	1.34E-02
128	GO:0009944: polarity specification of adaxial/abaxial axis	1.34E-02
129	GO:0007010: cytoskeleton organization	1.34E-02
130	GO:0006289: nucleotide-excision repair	1.34E-02
131	GO:0046777: protein autophosphorylation	1.37E-02
132	GO:0010073: meristem maintenance	1.43E-02
133	GO:0006825: copper ion transport	1.43E-02
134	GO:0006418: tRNA aminoacylation for protein translation	1.43E-02
135	GO:0015992: proton transport	1.53E-02
136	GO:0031348: negative regulation of defense response	1.64E-02
137	GO:0009814: defense response, incompatible interaction	1.64E-02
138	GO:0035428: hexose transmembrane transport	1.64E-02
139	GO:0006730: one-carbon metabolic process	1.64E-02
140	GO:0010089: xylem development	1.85E-02
141	GO:0048443: stamen development	1.85E-02
142	GO:0019722: calcium-mediated signaling	1.85E-02
143	GO:0010118: stomatal movement	2.07E-02
144	GO:0008033: tRNA processing	2.07E-02
145	GO:0010197: polar nucleus fusion	2.18E-02
146	GO:0010154: fruit development	2.18E-02
147	GO:0007018: microtubule-based movement	2.29E-02
148	GO:0042752: regulation of circadian rhythm	2.29E-02
149	GO:0007059: chromosome segregation	2.29E-02
150	GO:0009646: response to absence of light	2.29E-02
151	GO:0008654: phospholipid biosynthetic process	2.41E-02
152	GO:0019252: starch biosynthetic process	2.41E-02
153	GO:0006413: translational initiation	2.64E-02
154	GO:0032502: developmental process	2.65E-02
155	GO:0009630: gravitropism	2.65E-02
156	GO:0010583: response to cyclopentenone	2.65E-02
157	GO:0010090: trichome morphogenesis	2.78E-02
158	GO:0019760: glucosinolate metabolic process	2.90E-02
159	GO:0007267: cell-cell signaling	3.03E-02
160	GO:0000910: cytokinesis	3.16E-02
161	GO:0007166: cell surface receptor signaling pathway	3.23E-02
162	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.42E-02
163	GO:0010029: regulation of seed germination	3.42E-02
164	GO:0010411: xyloglucan metabolic process	3.70E-02
165	GO:0016311: dephosphorylation	3.83E-02
166	GO:0009817: defense response to fungus, incompatible interaction	3.97E-02
167	GO:0048481: plant ovule development	3.97E-02
168	GO:0009738: abscisic acid-activated signaling pathway	4.04E-02
169	GO:0009416: response to light stimulus	4.21E-02
170	GO:0048527: lateral root development	4.41E-02
171	GO:0045087: innate immune response	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0046905: phytoene synthase activity	0.00E+00
9	GO:0005525: GTP binding	1.46E-04
10	GO:0043022: ribosome binding	2.38E-04
11	GO:0031516: far-red light photoreceptor activity	2.55E-04
12	GO:0003879: ATP phosphoribosyltransferase activity	2.55E-04
13	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.55E-04
14	GO:0004813: alanine-tRNA ligase activity	2.55E-04
15	GO:0005290: L-histidine transmembrane transporter activity	2.55E-04
16	GO:0004008: copper-exporting ATPase activity	2.55E-04
17	GO:0016618: hydroxypyruvate reductase activity	2.55E-04
18	GO:0051996: squalene synthase activity	2.55E-04
19	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.55E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.55E-04
21	GO:0004830: tryptophan-tRNA ligase activity	2.55E-04
22	GO:0010291: carotene beta-ring hydroxylase activity	5.64E-04
23	GO:0009883: red or far-red light photoreceptor activity	5.64E-04
24	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.64E-04
25	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	5.64E-04
26	GO:0004766: spermidine synthase activity	5.64E-04
27	GO:0000064: L-ornithine transmembrane transporter activity	5.64E-04
28	GO:0004829: threonine-tRNA ligase activity	5.64E-04
29	GO:0019156: isoamylase activity	5.64E-04
30	GO:0048531: beta-1,3-galactosyltransferase activity	5.64E-04
31	GO:0008728: GTP diphosphokinase activity	5.64E-04
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.64E-04
33	GO:0005366: myo-inositol:proton symporter activity	5.64E-04
34	GO:0004672: protein kinase activity	6.85E-04
35	GO:0015144: carbohydrate transmembrane transporter activity	8.26E-04
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.30E-04
37	GO:0016805: dipeptidase activity	9.15E-04
38	GO:0008430: selenium binding	9.15E-04
39	GO:0004180: carboxypeptidase activity	9.15E-04
40	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.15E-04
41	GO:0008020: G-protein coupled photoreceptor activity	9.15E-04
42	GO:0030267: glyoxylate reductase (NADP) activity	9.15E-04
43	GO:0005351: sugar:proton symporter activity	9.87E-04
44	GO:0003924: GTPase activity	1.15E-03
45	GO:0009882: blue light photoreceptor activity	1.31E-03
46	GO:0004300: enoyl-CoA hydratase activity	1.31E-03
47	GO:0015189: L-lysine transmembrane transporter activity	1.31E-03
48	GO:0017089: glycolipid transporter activity	1.31E-03
49	GO:0005354: galactose transmembrane transporter activity	1.31E-03
50	GO:0015181: arginine transmembrane transporter activity	1.31E-03
51	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.31E-03
52	GO:0016149: translation release factor activity, codon specific	1.31E-03
53	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.31E-03
54	GO:0001053: plastid sigma factor activity	1.75E-03
55	GO:0051861: glycolipid binding	1.75E-03
56	GO:0016987: sigma factor activity	1.75E-03
57	GO:0070628: proteasome binding	1.75E-03
58	GO:0004506: squalene monooxygenase activity	1.75E-03
59	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.75E-03
60	GO:0042277: peptide binding	1.75E-03
61	GO:0003690: double-stranded DNA binding	1.83E-03
62	GO:0008374: O-acyltransferase activity	2.23E-03
63	GO:0003785: actin monomer binding	2.23E-03
64	GO:0005355: glucose transmembrane transporter activity	2.40E-03
65	GO:0031593: polyubiquitin binding	2.75E-03
66	GO:0004556: alpha-amylase activity	2.75E-03
67	GO:0004518: nuclease activity	2.94E-03
68	GO:0009927: histidine phosphotransfer kinase activity	3.30E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	3.30E-03
70	GO:0004427: inorganic diphosphatase activity	3.89E-03
71	GO:0008312: 7S RNA binding	4.52E-03
72	GO:0008236: serine-type peptidase activity	4.92E-03
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.02E-03
74	GO:0008142: oxysterol binding	5.18E-03
75	GO:0005375: copper ion transmembrane transporter activity	5.18E-03
76	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.18E-03
77	GO:0003747: translation release factor activity	5.86E-03
78	GO:0071949: FAD binding	5.86E-03
79	GO:0004673: protein histidine kinase activity	7.33E-03
80	GO:0004805: trehalose-phosphatase activity	7.33E-03
81	GO:0046872: metal ion binding	8.05E-03
82	GO:0000049: tRNA binding	8.92E-03
83	GO:0000155: phosphorelay sensor kinase activity	9.75E-03
84	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.75E-03
85	GO:0008081: phosphoric diester hydrolase activity	9.75E-03
86	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.24E-02
87	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.24E-02
88	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.24E-02
89	GO:0031418: L-ascorbic acid binding	1.34E-02
90	GO:0043130: ubiquitin binding	1.34E-02
91	GO:0016787: hydrolase activity	1.44E-02
92	GO:0042803: protein homodimerization activity	1.68E-02
93	GO:0004871: signal transducer activity	1.68E-02
94	GO:0016760: cellulose synthase (UDP-forming) activity	1.74E-02
95	GO:0030570: pectate lyase activity	1.74E-02
96	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.80E-02
97	GO:0003727: single-stranded RNA binding	1.85E-02
98	GO:0004812: aminoacyl-tRNA ligase activity	1.95E-02
99	GO:0004527: exonuclease activity	2.18E-02
100	GO:0008536: Ran GTPase binding	2.18E-02
101	GO:0008080: N-acetyltransferase activity	2.18E-02
102	GO:0010181: FMN binding	2.29E-02
103	GO:0019901: protein kinase binding	2.41E-02
104	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.53E-02
105	GO:0048038: quinone binding	2.53E-02
106	GO:0016759: cellulose synthase activity	2.90E-02
107	GO:0003684: damaged DNA binding	2.90E-02
108	GO:0016791: phosphatase activity	2.90E-02
109	GO:0008017: microtubule binding	2.96E-02
110	GO:0008237: metallopeptidase activity	3.03E-02
111	GO:0016413: O-acetyltransferase activity	3.16E-02
112	GO:0016597: amino acid binding	3.16E-02
113	GO:0003743: translation initiation factor activity	3.30E-02
114	GO:0003723: RNA binding	3.34E-02
115	GO:0042802: identical protein binding	3.59E-02
116	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.70E-02
117	GO:0005096: GTPase activator activity	4.12E-02
118	GO:0003697: single-stranded DNA binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	3.09E-11
3	GO:0016604: nuclear body	4.21E-04
4	GO:0080085: signal recognition particle, chloroplast targeting	5.64E-04
5	GO:0009570: chloroplast stroma	6.15E-04
6	GO:0009574: preprophase band	7.37E-04
7	GO:0016605: PML body	9.15E-04
8	GO:0046658: anchored component of plasma membrane	1.56E-03
9	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.75E-03
10	GO:0009535: chloroplast thylakoid membrane	1.87E-03
11	GO:0005773: vacuole	2.22E-03
12	GO:0031209: SCAR complex	2.75E-03
13	GO:0030529: intracellular ribonucleoprotein complex	3.97E-03
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.18E-03
15	GO:0031225: anchored component of membrane	6.85E-03
16	GO:0000311: plastid large ribosomal subunit	8.92E-03
17	GO:0005938: cell cortex	9.75E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	1.15E-02
19	GO:0005886: plasma membrane	1.30E-02
20	GO:0042651: thylakoid membrane	1.43E-02
21	GO:0009532: plastid stroma	1.53E-02
22	GO:0015629: actin cytoskeleton	1.74E-02
23	GO:0005871: kinesin complex	1.95E-02
24	GO:0009705: plant-type vacuole membrane	2.83E-02
25	GO:0005768: endosome	2.90E-02
26	GO:0009295: nucleoid	3.03E-02
27	GO:0015934: large ribosomal subunit	4.41E-02