co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:1901698: response to nitrogen compound	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
7	GO:0043972: histone H3-K23 acetylation	0.00E+00
8	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.27E-04
9	GO:0010480: microsporocyte differentiation	2.36E-04
10	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.36E-04
11	GO:0051171: regulation of nitrogen compound metabolic process	2.36E-04
12	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.36E-04
13	GO:0043971: histone H3-K18 acetylation	2.36E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.24E-04
15	GO:0048255: mRNA stabilization	5.24E-04
16	GO:0080175: phragmoplast microtubule organization	5.24E-04
17	GO:0080005: photosystem stoichiometry adjustment	5.24E-04
18	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.24E-04
19	GO:0045493: xylan catabolic process	8.52E-04
20	GO:0006013: mannose metabolic process	8.52E-04
21	GO:0071705: nitrogen compound transport	8.52E-04
22	GO:0009451: RNA modification	8.96E-04
23	GO:1902290: positive regulation of defense response to oomycetes	1.21E-03
24	GO:0009800: cinnamic acid biosynthetic process	1.21E-03
25	GO:0009650: UV protection	1.21E-03
26	GO:0010306: rhamnogalacturonan II biosynthetic process	1.21E-03
27	GO:0010255: glucose mediated signaling pathway	1.21E-03
28	GO:0071249: cellular response to nitrate	1.62E-03
29	GO:0015846: polyamine transport	1.62E-03
30	GO:0048653: anther development	1.86E-03
31	GO:0048868: pollen tube development	2.00E-03
32	GO:0051225: spindle assembly	2.07E-03
33	GO:0071493: cellular response to UV-B	2.07E-03
34	GO:0016558: protein import into peroxisome matrix	2.07E-03
35	GO:0002229: defense response to oomycetes	2.47E-03
36	GO:0048827: phyllome development	2.55E-03
37	GO:0010315: auxin efflux	2.55E-03
38	GO:0006559: L-phenylalanine catabolic process	2.55E-03
39	GO:0006655: phosphatidylglycerol biosynthetic process	2.55E-03
40	GO:0034389: lipid particle organization	3.06E-03
41	GO:0006401: RNA catabolic process	3.61E-03
42	GO:0009610: response to symbiotic fungus	3.61E-03
43	GO:0048437: floral organ development	3.61E-03
44	GO:0034968: histone lysine methylation	4.19E-03
45	GO:0006353: DNA-templated transcription, termination	4.19E-03
46	GO:0007389: pattern specification process	4.79E-03
47	GO:0044030: regulation of DNA methylation	4.79E-03
48	GO:0006002: fructose 6-phosphate metabolic process	4.79E-03
49	GO:0010052: guard cell differentiation	4.79E-03
50	GO:0009832: plant-type cell wall biogenesis	4.87E-03
51	GO:0019432: triglyceride biosynthetic process	5.43E-03
52	GO:0008202: steroid metabolic process	6.09E-03
53	GO:1900426: positive regulation of defense response to bacterium	6.09E-03
54	GO:0010380: regulation of chlorophyll biosynthetic process	6.09E-03
55	GO:0016571: histone methylation	6.09E-03
56	GO:0016485: protein processing	7.50E-03
57	GO:0048229: gametophyte development	7.50E-03
58	GO:0006415: translational termination	7.50E-03
59	GO:1903507: negative regulation of nucleic acid-templated transcription	7.50E-03
60	GO:0016024: CDP-diacylglycerol biosynthetic process	8.25E-03
61	GO:0015706: nitrate transport	8.25E-03
62	GO:0071555: cell wall organization	8.86E-03
63	GO:0010229: inflorescence development	9.02E-03
64	GO:0010075: regulation of meristem growth	9.02E-03
65	GO:0031347: regulation of defense response	9.17E-03
66	GO:0010540: basipetal auxin transport	9.82E-03
67	GO:0009934: regulation of meristem structural organization	9.82E-03
68	GO:0009416: response to light stimulus	1.00E-02
69	GO:0080188: RNA-directed DNA methylation	1.06E-02
70	GO:0010167: response to nitrate	1.06E-02
71	GO:0006468: protein phosphorylation	1.10E-02
72	GO:0006863: purine nucleobase transport	1.15E-02
73	GO:0009833: plant-type primary cell wall biogenesis	1.15E-02
74	GO:0006071: glycerol metabolic process	1.15E-02
75	GO:0000162: tryptophan biosynthetic process	1.15E-02
76	GO:0007010: cytoskeleton organization	1.24E-02
77	GO:0010187: negative regulation of seed germination	1.24E-02
78	GO:0010073: meristem maintenance	1.32E-02
79	GO:0043622: cortical microtubule organization	1.32E-02
80	GO:0009793: embryo development ending in seed dormancy	1.34E-02
81	GO:0019748: secondary metabolic process	1.51E-02
82	GO:0016226: iron-sulfur cluster assembly	1.51E-02
83	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.51E-02
84	GO:0051726: regulation of cell cycle	1.55E-02
85	GO:0009693: ethylene biosynthetic process	1.61E-02
86	GO:0042127: regulation of cell proliferation	1.70E-02
87	GO:0010051: xylem and phloem pattern formation	1.91E-02
88	GO:0008654: phospholipid biosynthetic process	2.23E-02
89	GO:0009851: auxin biosynthetic process	2.23E-02
90	GO:0048825: cotyledon development	2.23E-02
91	GO:0006635: fatty acid beta-oxidation	2.34E-02
92	GO:0080156: mitochondrial mRNA modification	2.34E-02
93	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.34E-02
94	GO:0010583: response to cyclopentenone	2.45E-02
95	GO:0007623: circadian rhythm	2.53E-02
96	GO:0010252: auxin homeostasis	2.68E-02
97	GO:0007166: cell surface receptor signaling pathway	2.89E-02
98	GO:0010468: regulation of gene expression	3.02E-02
99	GO:0016126: sterol biosynthetic process	3.04E-02
100	GO:0009911: positive regulation of flower development	3.04E-02
101	GO:0010411: xyloglucan metabolic process	3.41E-02
102	GO:0016049: cell growth	3.54E-02
103	GO:0008219: cell death	3.67E-02
104	GO:0030244: cellulose biosynthetic process	3.67E-02
105	GO:0009658: chloroplast organization	3.90E-02
106	GO:0009834: plant-type secondary cell wall biogenesis	3.93E-02
107	GO:0006811: ion transport	3.93E-02
108	GO:0009910: negative regulation of flower development	4.07E-02
109	GO:0051301: cell division	4.08E-02
110	GO:0009853: photorespiration	4.34E-02
111	GO:0007049: cell cycle	4.35E-02
112	GO:0055085: transmembrane transport	4.91E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0017091: AU-rich element binding	2.36E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.36E-04
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.36E-04
9	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.36E-04
10	GO:0008327: methyl-CpG binding	5.11E-04
11	GO:0004047: aminomethyltransferase activity	5.24E-04
12	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	5.24E-04
13	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	5.24E-04
14	GO:0016805: dipeptidase activity	8.52E-04
15	GO:0010429: methyl-CpNpN binding	8.52E-04
16	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.52E-04
17	GO:0045548: phenylalanine ammonia-lyase activity	8.52E-04
18	GO:0010428: methyl-CpNpG binding	8.52E-04
19	GO:0000254: C-4 methylsterol oxidase activity	1.21E-03
20	GO:0046556: alpha-L-arabinofuranosidase activity	1.62E-03
21	GO:0080032: methyl jasmonate esterase activity	1.62E-03
22	GO:0010385: double-stranded methylated DNA binding	1.62E-03
23	GO:0009044: xylan 1,4-beta-xylosidase activity	1.62E-03
24	GO:0019901: protein kinase binding	2.31E-03
25	GO:0004605: phosphatidate cytidylyltransferase activity	2.55E-03
26	GO:0004559: alpha-mannosidase activity	3.06E-03
27	GO:0004144: diacylglycerol O-acyltransferase activity	3.06E-03
28	GO:0008237: metallopeptidase activity	3.17E-03
29	GO:0003872: 6-phosphofructokinase activity	3.61E-03
30	GO:0019899: enzyme binding	3.61E-03
31	GO:0004806: triglyceride lipase activity	4.19E-03
32	GO:0004721: phosphoprotein phosphatase activity	4.19E-03
33	GO:0004519: endonuclease activity	4.76E-03
34	GO:0008142: oxysterol binding	4.79E-03
35	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.79E-03
36	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.11E-03
37	GO:0003747: translation release factor activity	5.43E-03
38	GO:0009672: auxin:proton symporter activity	6.09E-03
39	GO:0042393: histone binding	6.69E-03
40	GO:0004713: protein tyrosine kinase activity	6.78E-03
41	GO:0004185: serine-type carboxypeptidase activity	7.57E-03
42	GO:0016301: kinase activity	7.79E-03
43	GO:0043621: protein self-association	8.19E-03
44	GO:0009982: pseudouridine synthase activity	9.02E-03
45	GO:0000175: 3'-5'-exoribonuclease activity	9.02E-03
46	GO:0010329: auxin efflux transmembrane transporter activity	9.02E-03
47	GO:0004674: protein serine/threonine kinase activity	9.19E-03
48	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.82E-03
49	GO:0003714: transcription corepressor activity	1.24E-02
50	GO:0005345: purine nucleobase transmembrane transporter activity	1.32E-02
51	GO:0022857: transmembrane transporter activity	1.37E-02
52	GO:0004540: ribonuclease activity	1.42E-02
53	GO:0004176: ATP-dependent peptidase activity	1.42E-02
54	GO:0033612: receptor serine/threonine kinase binding	1.42E-02
55	GO:0004871: signal transducer activity	1.46E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.52E-02
57	GO:0030246: carbohydrate binding	1.57E-02
58	GO:0016760: cellulose synthase (UDP-forming) activity	1.61E-02
59	GO:0004672: protein kinase activity	1.72E-02
60	GO:0018024: histone-lysine N-methyltransferase activity	1.80E-02
61	GO:0004402: histone acetyltransferase activity	1.91E-02
62	GO:0001085: RNA polymerase II transcription factor binding	2.01E-02
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-02
64	GO:0003723: RNA binding	2.61E-02
65	GO:0008017: microtubule binding	2.65E-02
66	GO:0016759: cellulose synthase activity	2.68E-02
67	GO:0005524: ATP binding	2.97E-02
68	GO:0046982: protein heterodimerization activity	3.83E-02
69	GO:0004222: metalloendopeptidase activity	3.93E-02
70	GO:0016788: hydrolase activity, acting on ester bonds	3.98E-02
71	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.07E-02
72	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.07E-02
73	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010005: cortical microtubule, transverse to long axis	1.27E-04
3	GO:0010370: perinucleolar chromocenter	2.36E-04
4	GO:0009505: plant-type cell wall	3.49E-04
5	GO:0010330: cellulose synthase complex	8.52E-04
6	GO:0070652: HAUS complex	8.52E-04
7	GO:0005819: spindle	8.54E-04
8	GO:0009507: chloroplast	1.68E-03
9	GO:0005945: 6-phosphofructokinase complex	2.07E-03
10	GO:0000178: exosome (RNase complex)	2.07E-03
11	GO:0005811: lipid particle	4.79E-03
12	GO:0005720: nuclear heterochromatin	5.43E-03
13	GO:0016602: CCAAT-binding factor complex	9.02E-03
14	GO:0005886: plasma membrane	1.13E-02
15	GO:0045271: respiratory chain complex I	1.32E-02
16	GO:0000775: chromosome, centromeric region	1.51E-02
17	GO:0005789: endoplasmic reticulum membrane	1.84E-02
18	GO:0009524: phragmoplast	1.93E-02
19	GO:0005770: late endosome	2.01E-02
20	GO:0000932: P-body	3.04E-02
21	GO:0005667: transcription factor complex	3.29E-02
22	GO:0005874: microtubule	4.66E-02
23	GO:0016021: integral component of membrane	4.73E-02