co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
10	GO:0015717: triose phosphate transport	0.00E+00
11	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
12	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
13	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
14	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
15	GO:0009773: photosynthetic electron transport in photosystem I	1.92E-10
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.30E-07
17	GO:0015979: photosynthesis	1.01E-06
18	GO:1901259: chloroplast rRNA processing	5.00E-06
19	GO:0006021: inositol biosynthetic process	7.81E-05
20	GO:0010207: photosystem II assembly	9.60E-05
21	GO:0009772: photosynthetic electron transport in photosystem II	3.09E-04
22	GO:0009443: pyridoxal 5'-phosphate salvage	3.55E-04
23	GO:0000967: rRNA 5'-end processing	3.55E-04
24	GO:1905039: carboxylic acid transmembrane transport	3.55E-04
25	GO:0080112: seed growth	3.55E-04
26	GO:1905200: gibberellic acid transmembrane transport	3.55E-04
27	GO:0019544: arginine catabolic process to glutamate	3.55E-04
28	GO:0006659: phosphatidylserine biosynthetic process	3.55E-04
29	GO:0042371: vitamin K biosynthetic process	3.55E-04
30	GO:0043686: co-translational protein modification	3.55E-04
31	GO:0043007: maintenance of rDNA	3.55E-04
32	GO:0034337: RNA folding	3.55E-04
33	GO:0005991: trehalose metabolic process	3.55E-04
34	GO:0000023: maltose metabolic process	3.55E-04
35	GO:0000476: maturation of 4.5S rRNA	3.55E-04
36	GO:0009657: plastid organization	4.76E-04
37	GO:0032544: plastid translation	4.76E-04
38	GO:0051645: Golgi localization	7.72E-04
39	GO:0009629: response to gravity	7.72E-04
40	GO:0007154: cell communication	7.72E-04
41	GO:0018026: peptidyl-lysine monomethylation	7.72E-04
42	GO:0060151: peroxisome localization	7.72E-04
43	GO:1904143: positive regulation of carotenoid biosynthetic process	7.72E-04
44	GO:0034470: ncRNA processing	7.72E-04
45	GO:0010027: thylakoid membrane organization	8.54E-04
46	GO:0009658: chloroplast organization	9.33E-04
47	GO:0005983: starch catabolic process	1.03E-03
48	GO:0015995: chlorophyll biosynthetic process	1.05E-03
49	GO:0090391: granum assembly	1.25E-03
50	GO:0009405: pathogenesis	1.25E-03
51	GO:0051646: mitochondrion localization	1.25E-03
52	GO:0090436: leaf pavement cell development	1.25E-03
53	GO:0035436: triose phosphate transmembrane transport	1.25E-03
54	GO:0006696: ergosterol biosynthetic process	1.25E-03
55	GO:0048467: gynoecium development	1.31E-03
56	GO:0009853: photorespiration	1.60E-03
57	GO:0034599: cellular response to oxidative stress	1.69E-03
58	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.80E-03
59	GO:0010731: protein glutathionylation	1.80E-03
60	GO:0045338: farnesyl diphosphate metabolic process	1.80E-03
61	GO:0006020: inositol metabolic process	1.80E-03
62	GO:0071484: cellular response to light intensity	1.80E-03
63	GO:0009152: purine ribonucleotide biosynthetic process	1.80E-03
64	GO:0010601: positive regulation of auxin biosynthetic process	1.80E-03
65	GO:0046653: tetrahydrofolate metabolic process	1.80E-03
66	GO:0006810: transport	2.21E-03
67	GO:0015994: chlorophyll metabolic process	2.42E-03
68	GO:0022622: root system development	2.42E-03
69	GO:0006546: glycine catabolic process	2.42E-03
70	GO:0015713: phosphoglycerate transport	2.42E-03
71	GO:0010109: regulation of photosynthesis	2.42E-03
72	GO:0019464: glycine decarboxylation via glycine cleavage system	2.42E-03
73	GO:0009765: photosynthesis, light harvesting	2.42E-03
74	GO:0006109: regulation of carbohydrate metabolic process	2.42E-03
75	GO:0006564: L-serine biosynthetic process	3.09E-03
76	GO:0010236: plastoquinone biosynthetic process	3.09E-03
77	GO:0031365: N-terminal protein amino acid modification	3.09E-03
78	GO:0080022: primary root development	3.34E-03
79	GO:0009958: positive gravitropism	3.61E-03
80	GO:0006662: glycerol ether metabolic process	3.61E-03
81	GO:1902456: regulation of stomatal opening	3.82E-03
82	GO:0010190: cytochrome b6f complex assembly	3.82E-03
83	GO:0000741: karyogamy	3.82E-03
84	GO:0046855: inositol phosphate dephosphorylation	3.82E-03
85	GO:0009643: photosynthetic acclimation	3.82E-03
86	GO:0006751: glutathione catabolic process	3.82E-03
87	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.82E-03
88	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.82E-03
89	GO:0000470: maturation of LSU-rRNA	3.82E-03
90	GO:0055114: oxidation-reduction process	3.83E-03
91	GO:0009646: response to absence of light	3.88E-03
92	GO:0009791: post-embryonic development	4.16E-03
93	GO:0042372: phylloquinone biosynthetic process	4.60E-03
94	GO:0048280: vesicle fusion with Golgi apparatus	4.60E-03
95	GO:0009955: adaxial/abaxial pattern specification	4.60E-03
96	GO:0071333: cellular response to glucose stimulus	4.60E-03
97	GO:0032502: developmental process	4.75E-03
98	GO:0010090: trichome morphogenesis	5.07E-03
99	GO:0009828: plant-type cell wall loosening	5.40E-03
100	GO:0048437: floral organ development	5.44E-03
101	GO:0010444: guard mother cell differentiation	5.44E-03
102	GO:0032880: regulation of protein localization	5.44E-03
103	GO:0006605: protein targeting	6.32E-03
104	GO:0006353: DNA-templated transcription, termination	6.32E-03
105	GO:0010078: maintenance of root meristem identity	6.32E-03
106	GO:0070413: trehalose metabolism in response to stress	6.32E-03
107	GO:0052543: callose deposition in cell wall	6.32E-03
108	GO:0009607: response to biotic stimulus	6.81E-03
109	GO:0005975: carbohydrate metabolic process	6.86E-03
110	GO:0043562: cellular response to nitrogen levels	7.25E-03
111	GO:0071482: cellular response to light stimulus	7.25E-03
112	GO:0010206: photosystem II repair	8.22E-03
113	GO:0046916: cellular transition metal ion homeostasis	8.22E-03
114	GO:0006783: heme biosynthetic process	8.22E-03
115	GO:0009821: alkaloid biosynthetic process	8.22E-03
116	GO:0018298: protein-chromophore linkage	8.42E-03
117	GO:0071577: zinc II ion transmembrane transport	9.24E-03
118	GO:0009638: phototropism	9.24E-03
119	GO:0048527: lateral root development	9.74E-03
120	GO:0006896: Golgi to vacuole transport	1.03E-02
121	GO:0006782: protoporphyrinogen IX biosynthetic process	1.03E-02
122	GO:0045036: protein targeting to chloroplast	1.03E-02
123	GO:0006949: syncytium formation	1.03E-02
124	GO:0019684: photosynthesis, light reaction	1.14E-02
125	GO:0009089: lysine biosynthetic process via diaminopimelate	1.14E-02
126	GO:0072593: reactive oxygen species metabolic process	1.14E-02
127	GO:0043085: positive regulation of catalytic activity	1.14E-02
128	GO:0015770: sucrose transport	1.14E-02
129	GO:0006415: translational termination	1.14E-02
130	GO:0009684: indoleacetic acid biosynthetic process	1.14E-02
131	GO:0016024: CDP-diacylglycerol biosynthetic process	1.26E-02
132	GO:0006790: sulfur compound metabolic process	1.26E-02
133	GO:0010588: cotyledon vascular tissue pattern formation	1.38E-02
134	GO:2000012: regulation of auxin polar transport	1.38E-02
135	GO:0030048: actin filament-based movement	1.38E-02
136	GO:0010114: response to red light	1.38E-02
137	GO:0050826: response to freezing	1.38E-02
138	GO:0009767: photosynthetic electron transport chain	1.38E-02
139	GO:0010143: cutin biosynthetic process	1.50E-02
140	GO:0006855: drug transmembrane transport	1.61E-02
141	GO:0009901: anther dehiscence	1.62E-02
142	GO:0019853: L-ascorbic acid biosynthetic process	1.62E-02
143	GO:0046854: phosphatidylinositol phosphorylation	1.62E-02
144	GO:0009664: plant-type cell wall organization	1.74E-02
145	GO:0006412: translation	1.85E-02
146	GO:0005992: trehalose biosynthetic process	1.89E-02
147	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
148	GO:0006418: tRNA aminoacylation for protein translation	2.03E-02
149	GO:0007017: microtubule-based process	2.03E-02
150	GO:0009768: photosynthesis, light harvesting in photosystem I	2.03E-02
151	GO:0009735: response to cytokinin	2.15E-02
152	GO:0019915: lipid storage	2.17E-02
153	GO:0061077: chaperone-mediated protein folding	2.17E-02
154	GO:0048367: shoot system development	2.28E-02
155	GO:0016226: iron-sulfur cluster assembly	2.31E-02
156	GO:0006730: one-carbon metabolic process	2.31E-02
157	GO:0019748: secondary metabolic process	2.31E-02
158	GO:0080167: response to karrikin	2.33E-02
159	GO:0071215: cellular response to abscisic acid stimulus	2.46E-02
160	GO:0009686: gibberellin biosynthetic process	2.46E-02
161	GO:0006012: galactose metabolic process	2.46E-02
162	GO:0009416: response to light stimulus	2.46E-02
163	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.46E-02
164	GO:0019722: calcium-mediated signaling	2.61E-02
165	GO:0009306: protein secretion	2.61E-02
166	GO:0042147: retrograde transport, endosome to Golgi	2.77E-02
167	GO:0008284: positive regulation of cell proliferation	2.77E-02
168	GO:0016117: carotenoid biosynthetic process	2.77E-02
169	GO:0009742: brassinosteroid mediated signaling pathway	2.82E-02
170	GO:0010087: phloem or xylem histogenesis	2.92E-02
171	GO:0010154: fruit development	3.08E-02
172	GO:0010197: polar nucleus fusion	3.08E-02
173	GO:0010182: sugar mediated signaling pathway	3.08E-02
174	GO:0009741: response to brassinosteroid	3.08E-02
175	GO:0010268: brassinosteroid homeostasis	3.08E-02
176	GO:0015986: ATP synthesis coupled proton transport	3.25E-02
177	GO:0006623: protein targeting to vacuole	3.41E-02
178	GO:0048825: cotyledon development	3.41E-02
179	GO:0019252: starch biosynthetic process	3.41E-02
180	GO:0008654: phospholipid biosynthetic process	3.41E-02
181	GO:0009556: microsporogenesis	3.41E-02
182	GO:0009851: auxin biosynthetic process	3.41E-02
183	GO:0009058: biosynthetic process	3.51E-02
184	GO:0006891: intra-Golgi vesicle-mediated transport	3.58E-02
185	GO:0016132: brassinosteroid biosynthetic process	3.58E-02
186	GO:0016042: lipid catabolic process	3.65E-02
187	GO:0009790: embryo development	3.88E-02
188	GO:1901657: glycosyl compound metabolic process	3.93E-02
189	GO:0016125: sterol metabolic process	4.11E-02
190	GO:0007267: cell-cell signaling	4.29E-02
191	GO:0016126: sterol biosynthetic process	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0005363: maltose transmembrane transporter activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0010303: limit dextrinase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0051060: pullulanase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0019843: rRNA binding	1.48E-07
10	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.66E-07
11	GO:0043495: protein anchor	7.81E-05
12	GO:0042802: identical protein binding	1.20E-04
13	GO:0005528: FK506 binding	1.57E-04
14	GO:0019899: enzyme binding	3.09E-04
15	GO:0051777: ent-kaurenoate oxidase activity	3.55E-04
16	GO:0004856: xylulokinase activity	3.55E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	3.55E-04
18	GO:0042586: peptide deformylase activity	3.55E-04
19	GO:0005080: protein kinase C binding	3.55E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.55E-04
21	GO:1905201: gibberellin transmembrane transporter activity	3.55E-04
22	GO:0004033: aldo-keto reductase (NADP) activity	3.89E-04
23	GO:0048038: quinone binding	5.34E-04
24	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.72E-04
25	GO:0016630: protochlorophyllide reductase activity	7.72E-04
26	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	7.72E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	7.72E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	7.72E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.72E-04
30	GO:0004512: inositol-3-phosphate synthase activity	7.72E-04
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.72E-04
32	GO:0047746: chlorophyllase activity	7.72E-04
33	GO:0003839: gamma-glutamylcyclotransferase activity	7.72E-04
34	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.72E-04
35	GO:0004617: phosphoglycerate dehydrogenase activity	7.72E-04
36	GO:0004047: aminomethyltransferase activity	7.72E-04
37	GO:0052832: inositol monophosphate 3-phosphatase activity	7.72E-04
38	GO:0016168: chlorophyll binding	9.14E-04
39	GO:0090729: toxin activity	1.25E-03
40	GO:0002161: aminoacyl-tRNA editing activity	1.25E-03
41	GO:0004751: ribose-5-phosphate isomerase activity	1.25E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.25E-03
43	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.25E-03
44	GO:0070402: NADPH binding	1.25E-03
45	GO:0071917: triose-phosphate transmembrane transporter activity	1.25E-03
46	GO:0008864: formyltetrahydrofolate deformylase activity	1.25E-03
47	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.25E-03
48	GO:0005525: GTP binding	1.76E-03
49	GO:0016149: translation release factor activity, codon specific	1.80E-03
50	GO:0016851: magnesium chelatase activity	1.80E-03
51	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.80E-03
52	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.80E-03
53	GO:0004185: serine-type carboxypeptidase activity	2.21E-03
54	GO:0045430: chalcone isomerase activity	2.42E-03
55	GO:0015120: phosphoglycerate transmembrane transporter activity	2.42E-03
56	GO:0004659: prenyltransferase activity	2.42E-03
57	GO:0016279: protein-lysine N-methyltransferase activity	2.42E-03
58	GO:0008453: alanine-glyoxylate transaminase activity	2.42E-03
59	GO:0022891: substrate-specific transmembrane transporter activity	2.63E-03
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.69E-03
61	GO:0016846: carbon-sulfur lyase activity	3.09E-03
62	GO:0003959: NADPH dehydrogenase activity	3.09E-03
63	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.09E-03
64	GO:0047134: protein-disulfide reductase activity	3.09E-03
65	GO:0004629: phospholipase C activity	3.82E-03
66	GO:0004556: alpha-amylase activity	3.82E-03
67	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.82E-03
68	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.82E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	3.88E-03
70	GO:0003735: structural constituent of ribosome	4.54E-03
71	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.60E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.60E-03
73	GO:0004435: phosphatidylinositol phospholipase C activity	4.60E-03
74	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.60E-03
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.07E-03
76	GO:0016791: phosphatase activity	5.40E-03
77	GO:0016597: amino acid binding	6.08E-03
78	GO:0046914: transition metal ion binding	7.25E-03
79	GO:0003747: translation release factor activity	8.22E-03
80	GO:0015238: drug transmembrane transporter activity	8.84E-03
81	GO:0016844: strictosidine synthase activity	9.24E-03
82	GO:0015297: antiporter activity	9.61E-03
83	GO:0008047: enzyme activator activity	1.03E-02
84	GO:0015020: glucuronosyltransferase activity	1.03E-02
85	GO:0008515: sucrose transmembrane transporter activity	1.14E-02
86	GO:0008559: xenobiotic-transporting ATPase activity	1.14E-02
87	GO:0000049: tRNA binding	1.26E-02
88	GO:0008378: galactosyltransferase activity	1.26E-02
89	GO:0003725: double-stranded RNA binding	1.38E-02
90	GO:0004565: beta-galactosidase activity	1.38E-02
91	GO:0004022: alcohol dehydrogenase (NAD) activity	1.38E-02
92	GO:0004089: carbonate dehydratase activity	1.38E-02
93	GO:0031072: heat shock protein binding	1.38E-02
94	GO:0008266: poly(U) RNA binding	1.50E-02
95	GO:0003774: motor activity	1.50E-02
96	GO:0008083: growth factor activity	1.50E-02
97	GO:0051119: sugar transmembrane transporter activity	1.62E-02
98	GO:0031409: pigment binding	1.76E-02
99	GO:0016788: hydrolase activity, acting on ester bonds	1.82E-02
100	GO:0051536: iron-sulfur cluster binding	1.89E-02
101	GO:0005385: zinc ion transmembrane transporter activity	1.89E-02
102	GO:0004857: enzyme inhibitor activity	1.89E-02
103	GO:0008324: cation transmembrane transporter activity	2.03E-02
104	GO:0005509: calcium ion binding	2.17E-02
105	GO:0003727: single-stranded RNA binding	2.61E-02
106	GO:0015035: protein disulfide oxidoreductase activity	2.74E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	2.77E-02
108	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.08E-02
109	GO:0004871: signal transducer activity	3.09E-02
110	GO:0003924: GTPase activity	3.78E-02
111	GO:0008565: protein transporter activity	3.98E-02
112	GO:0009055: electron carrier activity	4.12E-02
113	GO:0008483: transaminase activity	4.29E-02
114	GO:0008237: metallopeptidase activity	4.29E-02
115	GO:0005200: structural constituent of cytoskeleton	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.57E-37
3	GO:0009535: chloroplast thylakoid membrane	4.13E-25
4	GO:0009570: chloroplast stroma	2.92E-24
5	GO:0009534: chloroplast thylakoid	1.89E-16
6	GO:0009941: chloroplast envelope	1.45E-13
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.61E-13
8	GO:0009579: thylakoid	1.16E-09
9	GO:0009543: chloroplast thylakoid lumen	7.83E-09
10	GO:0031969: chloroplast membrane	6.20E-06
11	GO:0031977: thylakoid lumen	2.93E-05
12	GO:0016020: membrane	1.27E-04
13	GO:0042651: thylakoid membrane	1.81E-04
14	GO:0009654: photosystem II oxygen evolving complex	1.81E-04
15	GO:0005840: ribosome	3.00E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	3.55E-04
17	GO:0009547: plastid ribosome	3.55E-04
18	GO:0019898: extrinsic component of membrane	4.90E-04
19	GO:0033281: TAT protein transport complex	1.25E-03
20	GO:0010007: magnesium chelatase complex	1.25E-03
21	GO:0030095: chloroplast photosystem II	1.31E-03
22	GO:0005960: glycine cleavage complex	1.80E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.82E-03
24	GO:0009523: photosystem II	4.16E-03
25	GO:0009840: chloroplastic endopeptidase Clp complex	4.60E-03
26	GO:0009706: chloroplast inner membrane	5.07E-03
27	GO:0010319: stromule	5.73E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	6.32E-03
29	GO:0048046: apoplast	7.60E-03
30	GO:0045298: tubulin complex	8.22E-03
31	GO:0005763: mitochondrial small ribosomal subunit	8.22E-03
32	GO:0016459: myosin complex	1.03E-02
33	GO:0000311: plastid large ribosomal subunit	1.26E-02
34	GO:0032040: small-subunit processome	1.26E-02
35	GO:0009508: plastid chromosome	1.38E-02
36	GO:0030076: light-harvesting complex	1.62E-02
37	GO:0016021: integral component of membrane	1.65E-02
38	GO:0015935: small ribosomal subunit	2.17E-02
39	GO:0009532: plastid stroma	2.17E-02
40	GO:0010287: plastoglobule	3.16E-02
41	GO:0005623: cell	3.42E-02
42	GO:0009295: nucleoid	4.29E-02
43	GO:0005886: plasma membrane	4.92E-02
44	GO:0005789: endoplasmic reticulum membrane	4.98E-02
45	GO:0005618: cell wall	4.98E-02