co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
3	GO:0042820: vitamin B6 catabolic process	0.00E+00
4	GO:1905177: tracheary element differentiation	0.00E+00
5	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0070979: protein K11-linked ubiquitination	0.00E+00
9	GO:0043488: regulation of mRNA stability	0.00E+00
10	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
11	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0045038: protein import into chloroplast thylakoid membrane	7.21E-05
14	GO:0051775: response to redox state	2.57E-04
15	GO:0009443: pyridoxal 5'-phosphate salvage	2.57E-04
16	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.57E-04
17	GO:0043266: regulation of potassium ion transport	2.57E-04
18	GO:0006659: phosphatidylserine biosynthetic process	2.57E-04
19	GO:2000021: regulation of ion homeostasis	2.57E-04
20	GO:0070574: cadmium ion transmembrane transport	2.57E-04
21	GO:0051247: positive regulation of protein metabolic process	2.57E-04
22	GO:1902458: positive regulation of stomatal opening	2.57E-04
23	GO:2000905: negative regulation of starch metabolic process	2.57E-04
24	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.57E-04
25	GO:0009658: chloroplast organization	4.03E-04
26	GO:1900871: chloroplast mRNA modification	5.68E-04
27	GO:0018026: peptidyl-lysine monomethylation	5.68E-04
28	GO:0000256: allantoin catabolic process	5.68E-04
29	GO:1904143: positive regulation of carotenoid biosynthetic process	5.68E-04
30	GO:0001682: tRNA 5'-leader removal	5.68E-04
31	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.68E-04
32	GO:0006568: tryptophan metabolic process	5.68E-04
33	GO:0010024: phytochromobilin biosynthetic process	5.68E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.68E-04
35	GO:0006415: translational termination	5.76E-04
36	GO:0010207: photosystem II assembly	8.40E-04
37	GO:0006788: heme oxidation	9.22E-04
38	GO:0048586: regulation of long-day photoperiodism, flowering	9.22E-04
39	GO:0006954: inflammatory response	9.22E-04
40	GO:0010136: ureide catabolic process	9.22E-04
41	GO:0031145: anaphase-promoting complex-dependent catabolic process	9.22E-04
42	GO:0010623: programmed cell death involved in cell development	9.22E-04
43	GO:0006760: folic acid-containing compound metabolic process	9.22E-04
44	GO:0005977: glycogen metabolic process	9.22E-04
45	GO:0009451: RNA modification	1.08E-03
46	GO:0016556: mRNA modification	1.32E-03
47	GO:0009226: nucleotide-sugar biosynthetic process	1.32E-03
48	GO:0090308: regulation of methylation-dependent chromatin silencing	1.32E-03
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.32E-03
50	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.32E-03
51	GO:0006107: oxaloacetate metabolic process	1.32E-03
52	GO:0010239: chloroplast mRNA processing	1.32E-03
53	GO:0006145: purine nucleobase catabolic process	1.32E-03
54	GO:0051016: barbed-end actin filament capping	1.32E-03
55	GO:0042989: sequestering of actin monomers	1.32E-03
56	GO:0010508: positive regulation of autophagy	1.76E-03
57	GO:0046656: folic acid biosynthetic process	1.76E-03
58	GO:0006021: inositol biosynthetic process	1.76E-03
59	GO:0006734: NADH metabolic process	1.76E-03
60	GO:0010021: amylopectin biosynthetic process	1.76E-03
61	GO:0048442: sepal development	1.76E-03
62	GO:2000306: positive regulation of photomorphogenesis	1.76E-03
63	GO:0080110: sporopollenin biosynthetic process	2.25E-03
64	GO:0030041: actin filament polymerization	2.25E-03
65	GO:0009107: lipoate biosynthetic process	2.25E-03
66	GO:0016123: xanthophyll biosynthetic process	2.25E-03
67	GO:0032876: negative regulation of DNA endoreduplication	2.25E-03
68	GO:0008654: phospholipid biosynthetic process	2.61E-03
69	GO:0032973: amino acid export	2.77E-03
70	GO:0000741: karyogamy	2.77E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	2.77E-03
72	GO:0010190: cytochrome b6f complex assembly	2.77E-03
73	GO:0050665: hydrogen peroxide biosynthetic process	2.77E-03
74	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.77E-03
75	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.77E-03
76	GO:0032502: developmental process	2.98E-03
77	GO:1901259: chloroplast rRNA processing	3.33E-03
78	GO:0010076: maintenance of floral meristem identity	3.33E-03
79	GO:0017148: negative regulation of translation	3.33E-03
80	GO:0048280: vesicle fusion with Golgi apparatus	3.33E-03
81	GO:0046654: tetrahydrofolate biosynthetic process	3.33E-03
82	GO:0010189: vitamin E biosynthetic process	3.33E-03
83	GO:0009854: oxidative photosynthetic carbon pathway	3.33E-03
84	GO:0051510: regulation of unidimensional cell growth	3.93E-03
85	GO:0043090: amino acid import	3.93E-03
86	GO:0051693: actin filament capping	3.93E-03
87	GO:0006875: cellular metal ion homeostasis	4.56E-03
88	GO:0009690: cytokinin metabolic process	4.56E-03
89	GO:0032875: regulation of DNA endoreduplication	4.56E-03
90	GO:2000070: regulation of response to water deprivation	4.56E-03
91	GO:0009657: plastid organization	5.22E-03
92	GO:0010204: defense response signaling pathway, resistance gene-independent	5.22E-03
93	GO:0032544: plastid translation	5.22E-03
94	GO:0015996: chlorophyll catabolic process	5.22E-03
95	GO:0007186: G-protein coupled receptor signaling pathway	5.22E-03
96	GO:0080144: amino acid homeostasis	5.92E-03
97	GO:0048441: petal development	7.40E-03
98	GO:0006896: Golgi to vacuole transport	7.40E-03
99	GO:0005975: carbohydrate metabolic process	7.58E-03
100	GO:0010216: maintenance of DNA methylation	8.19E-03
101	GO:0009773: photosynthetic electron transport in photosystem I	8.19E-03
102	GO:0016024: CDP-diacylglycerol biosynthetic process	9.00E-03
103	GO:0045037: protein import into chloroplast stroma	9.00E-03
104	GO:0010628: positive regulation of gene expression	9.85E-03
105	GO:0006108: malate metabolic process	9.85E-03
106	GO:0030036: actin cytoskeleton organization	9.85E-03
107	GO:0009718: anthocyanin-containing compound biosynthetic process	9.85E-03
108	GO:0007015: actin filament organization	1.07E-02
109	GO:0048440: carpel development	1.07E-02
110	GO:0006541: glutamine metabolic process	1.07E-02
111	GO:0019853: L-ascorbic acid biosynthetic process	1.16E-02
112	GO:0090351: seedling development	1.16E-02
113	GO:0009416: response to light stimulus	1.21E-02
114	GO:0007010: cytoskeleton organization	1.35E-02
115	GO:0008299: isoprenoid biosynthetic process	1.45E-02
116	GO:0006730: one-carbon metabolic process	1.65E-02
117	GO:0030245: cellulose catabolic process	1.65E-02
118	GO:0006396: RNA processing	1.70E-02
119	GO:0006012: galactose metabolic process	1.76E-02
120	GO:0019722: calcium-mediated signaling	1.86E-02
121	GO:0010089: xylem development	1.86E-02
122	GO:0010584: pollen exine formation	1.86E-02
123	GO:0048443: stamen development	1.86E-02
124	GO:0042147: retrograde transport, endosome to Golgi	1.97E-02
125	GO:0008033: tRNA processing	2.09E-02
126	GO:0010087: phloem or xylem histogenesis	2.09E-02
127	GO:0010197: polar nucleus fusion	2.20E-02
128	GO:0010182: sugar mediated signaling pathway	2.20E-02
129	GO:0009741: response to brassinosteroid	2.20E-02
130	GO:0045489: pectin biosynthetic process	2.20E-02
131	GO:0009646: response to absence of light	2.32E-02
132	GO:0019252: starch biosynthetic process	2.43E-02
133	GO:0055072: iron ion homeostasis	2.43E-02
134	GO:0006623: protein targeting to vacuole	2.43E-02
135	GO:0009791: post-embryonic development	2.43E-02
136	GO:0006891: intra-Golgi vesicle-mediated transport	2.56E-02
137	GO:0016032: viral process	2.68E-02
138	GO:0007267: cell-cell signaling	3.06E-02
139	GO:0010027: thylakoid membrane organization	3.32E-02
140	GO:0008380: RNA splicing	3.42E-02
141	GO:0010029: regulation of seed germination	3.46E-02
142	GO:0006888: ER to Golgi vesicle-mediated transport	3.73E-02
143	GO:0015995: chlorophyll biosynthetic process	3.73E-02
144	GO:0048527: lateral root development	4.45E-02
145	GO:0009793: embryo development ending in seed dormancy	4.53E-02
146	GO:0045087: innate immune response	4.75E-02
147	GO:0016051: carbohydrate biosynthetic process	4.75E-02
148	GO:0006099: tricarboxylic acid cycle	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0070402: NADPH binding	1.11E-05
8	GO:0004033: aldo-keto reductase (NADP) activity	2.41E-04
9	GO:0008242: omega peptidase activity	2.57E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.57E-04
11	GO:0008746: NAD(P)+ transhydrogenase activity	2.57E-04
12	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.57E-04
13	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.57E-04
14	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.57E-04
15	GO:0003747: translation release factor activity	3.60E-04
16	GO:0004512: inositol-3-phosphate synthase activity	5.68E-04
17	GO:0048531: beta-1,3-galactosyltransferase activity	5.68E-04
18	GO:0019156: isoamylase activity	5.68E-04
19	GO:0004150: dihydroneopterin aldolase activity	5.68E-04
20	GO:0034722: gamma-glutamyl-peptidase activity	5.68E-04
21	GO:0004103: choline kinase activity	5.68E-04
22	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.68E-04
23	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.68E-04
24	GO:0102083: 7,8-dihydromonapterin aldolase activity	5.68E-04
25	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.40E-04
26	GO:0016992: lipoate synthase activity	9.22E-04
27	GO:0003913: DNA photolyase activity	9.22E-04
28	GO:0004848: ureidoglycolate hydrolase activity	9.22E-04
29	GO:0003723: RNA binding	1.11E-03
30	GO:0005528: FK506 binding	1.15E-03
31	GO:0015086: cadmium ion transmembrane transporter activity	1.32E-03
32	GO:0016149: translation release factor activity, codon specific	1.32E-03
33	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.32E-03
34	GO:0043023: ribosomal large subunit binding	1.32E-03
35	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.32E-03
36	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.32E-03
37	GO:0004392: heme oxygenase (decyclizing) activity	1.76E-03
38	GO:0008891: glycolate oxidase activity	1.76E-03
39	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.76E-03
40	GO:0016279: protein-lysine N-methyltransferase activity	1.76E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.76E-03
42	GO:0004045: aminoacyl-tRNA hydrolase activity	1.76E-03
43	GO:0080032: methyl jasmonate esterase activity	1.76E-03
44	GO:0003785: actin monomer binding	2.25E-03
45	GO:0004556: alpha-amylase activity	2.77E-03
46	GO:0004462: lactoylglutathione lyase activity	2.77E-03
47	GO:0016615: malate dehydrogenase activity	2.77E-03
48	GO:0008200: ion channel inhibitor activity	2.77E-03
49	GO:0004605: phosphatidate cytidylyltransferase activity	2.77E-03
50	GO:0080030: methyl indole-3-acetate esterase activity	2.77E-03
51	GO:0004526: ribonuclease P activity	2.77E-03
52	GO:0030060: L-malate dehydrogenase activity	3.33E-03
53	GO:0003730: mRNA 3'-UTR binding	3.33E-03
54	GO:0008195: phosphatidate phosphatase activity	3.33E-03
55	GO:0008237: metallopeptidase activity	3.59E-03
56	GO:0015103: inorganic anion transmembrane transporter activity	3.93E-03
57	GO:0043022: ribosome binding	4.56E-03
58	GO:0004519: endonuclease activity	5.76E-03
59	GO:0004222: metalloendopeptidase activity	5.79E-03
60	GO:0015020: glucuronosyltransferase activity	7.40E-03
61	GO:0008081: phosphoric diester hydrolase activity	9.85E-03
62	GO:0031072: heat shock protein binding	9.85E-03
63	GO:0009982: pseudouridine synthase activity	9.85E-03
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.00E-02
65	GO:0008266: poly(U) RNA binding	1.07E-02
66	GO:0003824: catalytic activity	1.30E-02
67	GO:0004176: ATP-dependent peptidase activity	1.55E-02
68	GO:0003779: actin binding	1.61E-02
69	GO:0004871: signal transducer activity	1.71E-02
70	GO:0008810: cellulase activity	1.76E-02
71	GO:0046873: metal ion transmembrane transporter activity	2.20E-02
72	GO:0008080: N-acetyltransferase activity	2.20E-02
73	GO:0010181: FMN binding	2.32E-02
74	GO:0050662: coenzyme binding	2.32E-02
75	GO:0016853: isomerase activity	2.32E-02
76	GO:0048038: quinone binding	2.56E-02
77	GO:0008375: acetylglucosaminyltransferase activity	3.59E-02
78	GO:0004721: phosphoprotein phosphatase activity	3.73E-02
79	GO:0015238: drug transmembrane transporter activity	4.16E-02
80	GO:0004601: peroxidase activity	4.42E-02
81	GO:0030145: manganese ion binding	4.45E-02
82	GO:0003993: acid phosphatase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	4.99E-22
3	GO:0009570: chloroplast stroma	2.76E-08
4	GO:0009535: chloroplast thylakoid membrane	1.95E-04
5	GO:0080085: signal recognition particle, chloroplast targeting	5.68E-04
6	GO:0008290: F-actin capping protein complex	5.68E-04
7	GO:0009528: plastid inner membrane	9.22E-04
8	GO:0030658: transport vesicle membrane	1.32E-03
9	GO:0009941: chloroplast envelope	1.65E-03
10	GO:0009527: plastid outer membrane	1.76E-03
11	GO:0009543: chloroplast thylakoid lumen	3.71E-03
12	GO:0030529: intracellular ribonucleoprotein complex	4.03E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	4.56E-03
14	GO:0009501: amyloplast	4.56E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.22E-03
16	GO:0043231: intracellular membrane-bounded organelle	5.89E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.92E-03
18	GO:0005720: nuclear heterochromatin	5.92E-03
19	GO:0005680: anaphase-promoting complex	5.92E-03
20	GO:0016604: nuclear body	6.64E-03
21	GO:0005938: cell cortex	9.85E-03
22	GO:0009508: plastid chromosome	9.85E-03
23	GO:0031969: chloroplast membrane	1.28E-02
24	GO:0042651: thylakoid membrane	1.45E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.45E-02
26	GO:0009532: plastid stroma	1.55E-02
27	GO:0015629: actin cytoskeleton	1.76E-02
28	GO:0019898: extrinsic component of membrane	2.43E-02
29	GO:0009705: plant-type vacuole membrane	2.87E-02
30	GO:0010319: stromule	3.06E-02
31	GO:0009295: nucleoid	3.06E-02
32	GO:0046658: anchored component of plasma membrane	3.79E-02
33	GO:0009707: chloroplast outer membrane	4.01E-02