co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0033528: S-methylmethionine cycle	0.00E+00
6	GO:0009638: phototropism	8.37E-05
7	GO:1902025: nitrate import	8.43E-05
8	GO:0000012: single strand break repair	8.43E-05
9	GO:0072387: flavin adenine dinucleotide metabolic process	8.43E-05
10	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	8.43E-05
11	GO:0043087: regulation of GTPase activity	8.43E-05
12	GO:0090548: response to nitrate starvation	8.43E-05
13	GO:0000066: mitochondrial ornithine transport	8.43E-05
14	GO:0006419: alanyl-tRNA aminoacylation	8.43E-05
15	GO:1901529: positive regulation of anion channel activity	2.00E-04
16	GO:0006435: threonyl-tRNA aminoacylation	2.00E-04
17	GO:0043255: regulation of carbohydrate biosynthetic process	2.00E-04
18	GO:1900871: chloroplast mRNA modification	2.00E-04
19	GO:0010617: circadian regulation of calcium ion oscillation	2.00E-04
20	GO:0099402: plant organ development	2.00E-04
21	GO:0010343: singlet oxygen-mediated programmed cell death	2.00E-04
22	GO:1902448: positive regulation of shade avoidance	3.35E-04
23	GO:1901672: positive regulation of systemic acquired resistance	3.35E-04
24	GO:0017006: protein-tetrapyrrole linkage	3.35E-04
25	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.38E-04
26	GO:0009584: detection of visible light	4.84E-04
27	GO:1901332: negative regulation of lateral root development	4.84E-04
28	GO:0006661: phosphatidylinositol biosynthetic process	6.44E-04
29	GO:0008295: spermidine biosynthetic process	6.44E-04
30	GO:1902347: response to strigolactone	6.44E-04
31	GO:0048442: sepal development	6.44E-04
32	GO:0051322: anaphase	6.44E-04
33	GO:0006465: signal peptide processing	8.14E-04
34	GO:0010117: photoprotection	8.14E-04
35	GO:0046283: anthocyanin-containing compound metabolic process	8.14E-04
36	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	9.94E-04
37	GO:1901371: regulation of leaf morphogenesis	9.94E-04
38	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	9.94E-04
39	GO:0060918: auxin transport	9.94E-04
40	GO:0030244: cellulose biosynthetic process	1.15E-03
41	GO:0018298: protein-chromophore linkage	1.15E-03
42	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.18E-03
43	GO:0010076: maintenance of floral meristem identity	1.18E-03
44	GO:0017148: negative regulation of translation	1.18E-03
45	GO:0010310: regulation of hydrogen peroxide metabolic process	1.18E-03
46	GO:0009834: plant-type secondary cell wall biogenesis	1.26E-03
47	GO:0010218: response to far red light	1.26E-03
48	GO:0006400: tRNA modification	1.39E-03
49	GO:0051510: regulation of unidimensional cell growth	1.39E-03
50	GO:0010161: red light signaling pathway	1.39E-03
51	GO:0045010: actin nucleation	1.60E-03
52	GO:0009827: plant-type cell wall modification	1.83E-03
53	GO:0009640: photomorphogenesis	1.84E-03
54	GO:0046777: protein autophosphorylation	1.93E-03
55	GO:0000373: Group II intron splicing	2.06E-03
56	GO:0046685: response to arsenic-containing substance	2.06E-03
57	GO:0009086: methionine biosynthetic process	2.30E-03
58	GO:0008202: steroid metabolic process	2.30E-03
59	GO:1900426: positive regulation of defense response to bacterium	2.30E-03
60	GO:0048441: petal development	2.56E-03
61	GO:0006259: DNA metabolic process	2.56E-03
62	GO:0006468: protein phosphorylation	2.69E-03
63	GO:0006265: DNA topological change	2.82E-03
64	GO:0009785: blue light signaling pathway	3.37E-03
65	GO:0030036: actin cytoskeleton organization	3.37E-03
66	GO:0010075: regulation of meristem growth	3.37E-03
67	GO:0009767: photosynthetic electron transport chain	3.37E-03
68	GO:0048440: carpel development	3.66E-03
69	GO:0010207: photosystem II assembly	3.66E-03
70	GO:0006302: double-strand break repair	3.66E-03
71	GO:0090351: seedling development	3.95E-03
72	GO:0009833: plant-type primary cell wall biogenesis	4.26E-03
73	GO:0006289: nucleotide-excision repair	4.57E-03
74	GO:2000377: regulation of reactive oxygen species metabolic process	4.57E-03
75	GO:0005992: trehalose biosynthetic process	4.57E-03
76	GO:0010073: meristem maintenance	4.89E-03
77	GO:0006825: copper ion transport	4.89E-03
78	GO:0006730: one-carbon metabolic process	5.55E-03
79	GO:0031348: negative regulation of defense response	5.55E-03
80	GO:0006413: translational initiation	5.61E-03
81	GO:0009738: abscisic acid-activated signaling pathway	5.76E-03
82	GO:0048443: stamen development	6.24E-03
83	GO:0007166: cell surface receptor signaling pathway	6.87E-03
84	GO:0010118: stomatal movement	6.97E-03
85	GO:0045489: pectin biosynthetic process	7.34E-03
86	GO:0010268: brassinosteroid homeostasis	7.34E-03
87	GO:0007018: microtubule-based movement	7.72E-03
88	GO:0042752: regulation of circadian rhythm	7.72E-03
89	GO:0007059: chromosome segregation	7.72E-03
90	GO:0009646: response to absence of light	7.72E-03
91	GO:0008654: phospholipid biosynthetic process	8.10E-03
92	GO:0016132: brassinosteroid biosynthetic process	8.50E-03
93	GO:0009630: gravitropism	8.90E-03
94	GO:0007264: small GTPase mediated signal transduction	8.90E-03
95	GO:0010090: trichome morphogenesis	9.30E-03
96	GO:0016125: sterol metabolic process	9.72E-03
97	GO:0019760: glucosinolate metabolic process	9.72E-03
98	GO:0000910: cytokinesis	1.06E-02
99	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.14E-02
100	GO:0010029: regulation of seed germination	1.14E-02
101	GO:0009793: embryo development ending in seed dormancy	1.17E-02
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.20E-02
103	GO:0048573: photoperiodism, flowering	1.23E-02
104	GO:0045087: innate immune response	1.57E-02
105	GO:0009637: response to blue light	1.57E-02
106	GO:0009853: photorespiration	1.57E-02
107	GO:0006839: mitochondrial transport	1.72E-02
108	GO:0006508: proteolysis	1.80E-02
109	GO:0010114: response to red light	1.88E-02
110	GO:0009644: response to high light intensity	1.99E-02
111	GO:0000165: MAPK cascade	2.15E-02
112	GO:0009809: lignin biosynthetic process	2.32E-02
113	GO:0009585: red, far-red light phototransduction	2.32E-02
114	GO:0005975: carbohydrate metabolic process	2.49E-02
115	GO:0035556: intracellular signal transduction	3.20E-02
116	GO:0009737: response to abscisic acid	3.79E-02
117	GO:0040008: regulation of growth	4.26E-02
118	GO:0006952: defense response	4.27E-02
119	GO:0007623: circadian rhythm	4.40E-02
120	GO:0009451: RNA modification	4.47E-02
121	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.77E-02
122	GO:0009739: response to gibberellin	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
2	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
3	GO:0004672: protein kinase activity	6.25E-06
4	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	8.43E-05
5	GO:0004813: alanine-tRNA ligase activity	8.43E-05
6	GO:0005290: L-histidine transmembrane transporter activity	8.43E-05
7	GO:0004008: copper-exporting ATPase activity	8.43E-05
8	GO:0031516: far-red light photoreceptor activity	8.43E-05
9	GO:0000064: L-ornithine transmembrane transporter activity	2.00E-04
10	GO:0004829: threonine-tRNA ligase activity	2.00E-04
11	GO:0009883: red or far-red light photoreceptor activity	2.00E-04
12	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.00E-04
13	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	2.00E-04
14	GO:0004766: spermidine synthase activity	2.00E-04
15	GO:0032549: ribonucleoside binding	3.35E-04
16	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.35E-04
17	GO:0008020: G-protein coupled photoreceptor activity	3.35E-04
18	GO:0016805: dipeptidase activity	3.35E-04
19	GO:0004180: carboxypeptidase activity	3.35E-04
20	GO:0015181: arginine transmembrane transporter activity	4.84E-04
21	GO:0009882: blue light photoreceptor activity	4.84E-04
22	GO:0015189: L-lysine transmembrane transporter activity	4.84E-04
23	GO:0070628: proteasome binding	6.44E-04
24	GO:0042277: peptide binding	6.44E-04
25	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.27E-04
26	GO:0031593: polyubiquitin binding	9.94E-04
27	GO:0004462: lactoylglutathione lyase activity	9.94E-04
28	GO:0009927: histidine phosphotransfer kinase activity	1.18E-03
29	GO:0004656: procollagen-proline 4-dioxygenase activity	1.18E-03
30	GO:0004222: metalloendopeptidase activity	1.26E-03
31	GO:0043022: ribosome binding	1.60E-03
32	GO:0005375: copper ion transmembrane transporter activity	1.83E-03
33	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.83E-03
34	GO:0008142: oxysterol binding	1.83E-03
35	GO:0016301: kinase activity	1.89E-03
36	GO:0071949: FAD binding	2.06E-03
37	GO:0046872: metal ion binding	2.25E-03
38	GO:0042803: protein homodimerization activity	2.36E-03
39	GO:0004673: protein histidine kinase activity	2.56E-03
40	GO:0004805: trehalose-phosphatase activity	2.56E-03
41	GO:0001054: RNA polymerase I activity	2.82E-03
42	GO:0000049: tRNA binding	3.09E-03
43	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.37E-03
44	GO:0008081: phosphoric diester hydrolase activity	3.37E-03
45	GO:0000155: phosphorelay sensor kinase activity	3.37E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.66E-03
47	GO:0043130: ubiquitin binding	4.57E-03
48	GO:0031418: L-ascorbic acid binding	4.57E-03
49	GO:0005524: ATP binding	5.01E-03
50	GO:0016760: cellulose synthase (UDP-forming) activity	5.89E-03
51	GO:0008017: microtubule binding	6.29E-03
52	GO:0003743: translation initiation factor activity	7.02E-03
53	GO:0004527: exonuclease activity	7.34E-03
54	GO:0042802: identical protein binding	7.64E-03
55	GO:0019901: protein kinase binding	8.10E-03
56	GO:0048038: quinone binding	8.50E-03
57	GO:0004518: nuclease activity	8.90E-03
58	GO:0003684: damaged DNA binding	9.72E-03
59	GO:0016759: cellulose synthase activity	9.72E-03
60	GO:0008237: metallopeptidase activity	1.01E-02
61	GO:0016597: amino acid binding	1.06E-02
62	GO:0016413: O-acetyltransferase activity	1.06E-02
63	GO:0005525: GTP binding	1.13E-02
64	GO:0004674: protein serine/threonine kinase activity	1.15E-02
65	GO:0008236: serine-type peptidase activity	1.28E-02
66	GO:0005096: GTPase activator activity	1.37E-02
67	GO:0003697: single-stranded DNA binding	1.57E-02
68	GO:0003924: GTPase activity	1.71E-02
69	GO:0035091: phosphatidylinositol binding	1.99E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.32E-02
71	GO:0003690: double-stranded DNA binding	2.38E-02
72	GO:0003777: microtubule motor activity	2.50E-02
73	GO:0005515: protein binding	2.53E-02
74	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.68E-02
75	GO:0004650: polygalacturonase activity	2.80E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.57E-02
77	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.84E-02
78	GO:0015144: carbohydrate transmembrane transporter activity	3.98E-02
79	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.00E-02
80	GO:0005351: sugar:proton symporter activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0016604: nuclear body	8.37E-05
2	GO:0009574: preprophase band	1.58E-04
3	GO:0016605: PML body	3.35E-04
4	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	6.44E-04
5	GO:0031209: SCAR complex	9.94E-04
6	GO:0005736: DNA-directed RNA polymerase I complex	2.06E-03
7	GO:0009532: plastid stroma	5.22E-03
8	GO:0005871: kinesin complex	6.60E-03
9	GO:0009295: nucleoid	1.01E-02
10	GO:0005802: trans-Golgi network	1.09E-02
11	GO:0030529: intracellular ribonucleoprotein complex	1.10E-02
12	GO:0005874: microtubule	1.12E-02
13	GO:0005768: endosome	1.29E-02
14	GO:0005886: plasma membrane	1.79E-02
15	GO:0009536: plastid	1.91E-02
16	GO:0009507: chloroplast	2.00E-02
17	GO:0005856: cytoskeleton	2.04E-02
18	GO:0016607: nuclear speck	2.68E-02
19	GO:0009706: chloroplast inner membrane	2.98E-02
20	GO:0009524: phragmoplast	3.64E-02
21	GO:0009535: chloroplast thylakoid membrane	4.03E-02
22	GO:0016021: integral component of membrane	4.07E-02
23	GO:0005759: mitochondrial matrix	4.12E-02