Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G77090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0046471: phosphatidylglycerol metabolic process0.00E+00
5GO:0009661: chromoplast organization0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:0009773: photosynthetic electron transport in photosystem I8.32E-07
8GO:0010207: photosystem II assembly2.10E-06
9GO:0055114: oxidation-reduction process2.72E-06
10GO:0015995: chlorophyll biosynthetic process5.11E-06
11GO:0090391: granum assembly1.57E-05
12GO:0005982: starch metabolic process2.32E-05
13GO:0006094: gluconeogenesis5.95E-05
14GO:0015994: chlorophyll metabolic process6.26E-05
15GO:0006021: inositol biosynthetic process6.26E-05
16GO:0016120: carotene biosynthetic process9.88E-05
17GO:0042549: photosystem II stabilization1.43E-04
18GO:0010114: response to red light2.48E-04
19GO:0010196: nonphotochemical quenching2.54E-04
20GO:0000025: maltose catabolic process3.11E-04
21GO:0009090: homoserine biosynthetic process3.11E-04
22GO:0005980: glycogen catabolic process3.11E-04
23GO:0046467: membrane lipid biosynthetic process3.11E-04
24GO:0015671: oxygen transport3.11E-04
25GO:0071277: cellular response to calcium ion3.11E-04
26GO:0080093: regulation of photorespiration3.11E-04
27GO:0031998: regulation of fatty acid beta-oxidation3.11E-04
28GO:0010028: xanthophyll cycle3.11E-04
29GO:0034337: RNA folding3.11E-04
30GO:0000023: maltose metabolic process3.11E-04
31GO:0019252: starch biosynthetic process3.83E-04
32GO:0032259: methylation4.20E-04
33GO:0006098: pentose-phosphate shunt4.73E-04
34GO:0005975: carbohydrate metabolic process4.86E-04
35GO:0006096: glycolytic process5.23E-04
36GO:0080029: cellular response to boron-containing substance levels6.81E-04
37GO:0005976: polysaccharide metabolic process6.81E-04
38GO:0006898: receptor-mediated endocytosis6.81E-04
39GO:0071457: cellular response to ozone6.81E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process6.81E-04
41GO:0010353: response to trehalose6.81E-04
42GO:0016122: xanthophyll metabolic process6.81E-04
43GO:0005983: starch catabolic process8.60E-04
44GO:0010143: cutin biosynthetic process1.09E-03
45GO:0006518: peptide metabolic process1.10E-03
46GO:0015979: photosynthesis1.22E-03
47GO:0006636: unsaturated fatty acid biosynthetic process1.36E-03
48GO:0006631: fatty acid metabolic process1.56E-03
49GO:0046713: borate transport1.58E-03
50GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.58E-03
51GO:0009067: aspartate family amino acid biosynthetic process1.58E-03
52GO:1902358: sulfate transmembrane transport1.58E-03
53GO:0006020: inositol metabolic process1.58E-03
54GO:0071484: cellular response to light intensity1.58E-03
55GO:0009152: purine ribonucleotide biosynthetic process1.58E-03
56GO:0046653: tetrahydrofolate metabolic process1.58E-03
57GO:0009768: photosynthesis, light harvesting in photosystem I1.66E-03
58GO:0019748: secondary metabolic process1.99E-03
59GO:0045727: positive regulation of translation2.12E-03
60GO:0071483: cellular response to blue light2.12E-03
61GO:0010021: amylopectin biosynthetic process2.12E-03
62GO:0071486: cellular response to high light intensity2.12E-03
63GO:0009765: photosynthesis, light harvesting2.12E-03
64GO:0071493: cellular response to UV-B2.71E-03
65GO:0006656: phosphatidylcholine biosynthetic process2.71E-03
66GO:0009904: chloroplast accumulation movement2.71E-03
67GO:0006097: glyoxylate cycle2.71E-03
68GO:1902456: regulation of stomatal opening3.35E-03
69GO:0010190: cytochrome b6f complex assembly3.35E-03
70GO:0046855: inositol phosphate dephosphorylation3.35E-03
71GO:0009643: photosynthetic acclimation3.35E-03
72GO:0009972: cytidine deamination3.35E-03
73GO:0010304: PSII associated light-harvesting complex II catabolic process3.35E-03
74GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.35E-03
75GO:1901259: chloroplast rRNA processing4.03E-03
76GO:0009903: chloroplast avoidance movement4.03E-03
77GO:0010189: vitamin E biosynthetic process4.03E-03
78GO:0009088: threonine biosynthetic process4.03E-03
79GO:0071333: cellular response to glucose stimulus4.03E-03
80GO:1901657: glycosyl compound metabolic process4.19E-03
81GO:1900057: positive regulation of leaf senescence4.76E-03
82GO:0008272: sulfate transport4.76E-03
83GO:0009769: photosynthesis, light harvesting in photosystem II4.76E-03
84GO:0009645: response to low light intensity stimulus4.76E-03
85GO:0009610: response to symbiotic fungus4.76E-03
86GO:0009395: phospholipid catabolic process4.76E-03
87GO:0019827: stem cell population maintenance5.53E-03
88GO:0030091: protein repair5.53E-03
89GO:0005978: glycogen biosynthetic process5.53E-03
90GO:0009642: response to light intensity5.53E-03
91GO:0070413: trehalose metabolism in response to stress5.53E-03
92GO:0009704: de-etiolation5.53E-03
93GO:0050821: protein stabilization5.53E-03
94GO:0019430: removal of superoxide radicals6.33E-03
95GO:0009657: plastid organization6.33E-03
96GO:0032544: plastid translation6.33E-03
97GO:0015996: chlorophyll catabolic process6.33E-03
98GO:0018298: protein-chromophore linkage6.93E-03
99GO:0009051: pentose-phosphate shunt, oxidative branch7.19E-03
100GO:0009821: alkaloid biosynthetic process7.19E-03
101GO:0010206: photosystem II repair7.19E-03
102GO:0019432: triglyceride biosynthetic process7.19E-03
103GO:0090333: regulation of stomatal closure7.19E-03
104GO:0006783: heme biosynthetic process7.19E-03
105GO:0010218: response to far red light7.65E-03
106GO:0006779: porphyrin-containing compound biosynthetic process8.07E-03
107GO:0009086: methionine biosynthetic process8.07E-03
108GO:0009637: response to blue light8.80E-03
109GO:0006782: protoporphyrinogen IX biosynthetic process9.00E-03
110GO:0006535: cysteine biosynthetic process from serine9.00E-03
111GO:0009641: shade avoidance9.00E-03
112GO:0034599: cellular response to oxidative stress9.20E-03
113GO:0009089: lysine biosynthetic process via diaminopimelate9.96E-03
114GO:0043085: positive regulation of catalytic activity9.96E-03
115GO:0000272: polysaccharide catabolic process9.96E-03
116GO:0018119: peptidyl-cysteine S-nitrosylation9.96E-03
117GO:0006790: sulfur compound metabolic process1.10E-02
118GO:0030048: actin filament-based movement1.20E-02
119GO:0006108: malate metabolic process1.20E-02
120GO:0006006: glucose metabolic process1.20E-02
121GO:0018107: peptidyl-threonine phosphorylation1.20E-02
122GO:0009725: response to hormone1.20E-02
123GO:0009644: response to high light intensity1.23E-02
124GO:0006810: transport1.23E-02
125GO:0019253: reductive pentose-phosphate cycle1.31E-02
126GO:0007015: actin filament organization1.31E-02
127GO:0010223: secondary shoot formation1.31E-02
128GO:0009266: response to temperature stimulus1.31E-02
129GO:0046854: phosphatidylinositol phosphorylation1.42E-02
130GO:0010025: wax biosynthetic process1.53E-02
131GO:0019762: glucosinolate catabolic process1.53E-02
132GO:0006364: rRNA processing1.54E-02
133GO:0009735: response to cytokinin1.61E-02
134GO:0005992: trehalose biosynthetic process1.65E-02
135GO:0019344: cysteine biosynthetic process1.65E-02
136GO:0080167: response to karrikin1.83E-02
137GO:0009269: response to desiccation1.89E-02
138GO:0016998: cell wall macromolecule catabolic process1.89E-02
139GO:0016226: iron-sulfur cluster assembly2.01E-02
140GO:0035428: hexose transmembrane transport2.01E-02
141GO:0030433: ubiquitin-dependent ERAD pathway2.01E-02
142GO:0071215: cellular response to abscisic acid stimulus2.14E-02
143GO:0045454: cell redox homeostasis2.29E-02
144GO:0016117: carotenoid biosynthetic process2.41E-02
145GO:0042631: cellular response to water deprivation2.55E-02
146GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
147GO:0006520: cellular amino acid metabolic process2.68E-02
148GO:0071472: cellular response to salt stress2.68E-02
149GO:0006662: glycerol ether metabolic process2.68E-02
150GO:0046323: glucose import2.68E-02
151GO:0009741: response to brassinosteroid2.68E-02
152GO:0009058: biosynthetic process2.89E-02
153GO:0008654: phospholipid biosynthetic process2.97E-02
154GO:0009408: response to heat2.98E-02
155GO:0032502: developmental process3.27E-02
156GO:0009630: gravitropism3.27E-02
157GO:0006633: fatty acid biosynthetic process3.45E-02
158GO:0051607: defense response to virus3.89E-02
159GO:0010027: thylakoid membrane organization4.05E-02
160GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.22E-02
161GO:0042128: nitrate assimilation4.38E-02
162GO:0010411: xyloglucan metabolic process4.55E-02
163GO:0016311: dephosphorylation4.72E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0045550: geranylgeranyl reductase activity0.00E+00
5GO:0080082: esculin beta-glucosidase activity0.00E+00
6GO:0016166: phytoene dehydrogenase activity0.00E+00
7GO:0004567: beta-mannosidase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
10GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
13GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
14GO:0047668: amygdalin beta-glucosidase activity0.00E+00
15GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
16GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
17GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
18GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
19GO:0004332: fructose-bisphosphate aldolase activity2.06E-06
20GO:0018708: thiol S-methyltransferase activity4.41E-06
21GO:0010297: heteropolysaccharide binding4.41E-06
22GO:0004373: glycogen (starch) synthase activity1.57E-05
23GO:0004565: beta-galactosidase activity5.95E-05
24GO:0009011: starch synthase activity6.26E-05
25GO:2001070: starch binding1.43E-04
26GO:0050521: alpha-glucan, water dikinase activity3.11E-04
27GO:0008184: glycogen phosphorylase activity3.11E-04
28GO:0004134: 4-alpha-glucanotransferase activity3.11E-04
29GO:0004645: phosphorylase activity3.11E-04
30GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.11E-04
31GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.11E-04
32GO:0034256: chlorophyll(ide) b reductase activity3.11E-04
33GO:0015168: glycerol transmembrane transporter activity3.11E-04
34GO:0031957: very long-chain fatty acid-CoA ligase activity3.11E-04
35GO:0045486: naringenin 3-dioxygenase activity3.11E-04
36GO:0005344: oxygen transporter activity3.11E-04
37GO:0035671: enone reductase activity3.11E-04
38GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.11E-04
39GO:0080079: cellobiose glucosidase activity3.11E-04
40GO:0008168: methyltransferase activity6.22E-04
41GO:0003844: 1,4-alpha-glucan branching enzyme activity6.81E-04
42GO:0008934: inositol monophosphate 1-phosphatase activity6.81E-04
43GO:0052833: inositol monophosphate 4-phosphatase activity6.81E-04
44GO:0019172: glyoxalase III activity6.81E-04
45GO:0004412: homoserine dehydrogenase activity6.81E-04
46GO:0004512: inositol-3-phosphate synthase activity6.81E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
48GO:0000234: phosphoethanolamine N-methyltransferase activity6.81E-04
49GO:0050017: L-3-cyanoalanine synthase activity6.81E-04
50GO:0008883: glutamyl-tRNA reductase activity6.81E-04
51GO:0047746: chlorophyllase activity6.81E-04
52GO:0042389: omega-3 fatty acid desaturase activity6.81E-04
53GO:0052832: inositol monophosphate 3-phosphatase activity6.81E-04
54GO:0033201: alpha-1,4-glucan synthase activity6.81E-04
55GO:0043169: cation binding1.10E-03
56GO:0050734: hydroxycinnamoyltransferase activity1.10E-03
57GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.10E-03
58GO:0008864: formyltetrahydrofolate deformylase activity1.10E-03
59GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
60GO:0031409: pigment binding1.36E-03
61GO:0050661: NADP binding1.48E-03
62GO:0019201: nucleotide kinase activity1.58E-03
63GO:0022890: inorganic cation transmembrane transporter activity1.58E-03
64GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.58E-03
65GO:0016851: magnesium chelatase activity1.58E-03
66GO:0046715: borate transmembrane transporter activity1.58E-03
67GO:0017057: 6-phosphogluconolactonase activity1.58E-03
68GO:0004072: aspartate kinase activity1.58E-03
69GO:0015204: urea transmembrane transporter activity2.12E-03
70GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.12E-03
71GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.71E-03
72GO:0016788: hydrolase activity, acting on ester bonds3.18E-03
73GO:0004462: lactoylglutathione lyase activity3.35E-03
74GO:0004784: superoxide dismutase activity3.35E-03
75GO:0016615: malate dehydrogenase activity3.35E-03
76GO:0008200: ion channel inhibitor activity3.35E-03
77GO:0004126: cytidine deaminase activity4.03E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.03E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.03E-03
80GO:0004017: adenylate kinase activity4.03E-03
81GO:0102391: decanoate--CoA ligase activity4.03E-03
82GO:0030060: L-malate dehydrogenase activity4.03E-03
83GO:0004602: glutathione peroxidase activity4.03E-03
84GO:0004124: cysteine synthase activity4.03E-03
85GO:0004467: long-chain fatty acid-CoA ligase activity4.76E-03
86GO:0005337: nucleoside transmembrane transporter activity5.53E-03
87GO:0016168: chlorophyll binding5.62E-03
88GO:0102483: scopolin beta-glucosidase activity6.26E-03
89GO:0008271: secondary active sulfate transmembrane transporter activity6.33E-03
90GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.33E-03
91GO:0016844: strictosidine synthase activity8.07E-03
92GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.07E-03
93GO:0008047: enzyme activator activity9.00E-03
94GO:0003993: acid phosphatase activity9.20E-03
95GO:0016787: hydrolase activity9.45E-03
96GO:0008422: beta-glucosidase activity9.61E-03
97GO:0016491: oxidoreductase activity9.93E-03
98GO:0015386: potassium:proton antiporter activity9.96E-03
99GO:0047372: acylglycerol lipase activity9.96E-03
100GO:0042802: identical protein binding1.08E-02
101GO:0015116: sulfate transmembrane transporter activity1.10E-02
102GO:0004185: serine-type carboxypeptidase activity1.14E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.20E-02
104GO:0031072: heat shock protein binding1.20E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.31E-02
106GO:0003774: motor activity1.31E-02
107GO:0051536: iron-sulfur cluster binding1.65E-02
108GO:0031418: L-ascorbic acid binding1.65E-02
109GO:0015079: potassium ion transmembrane transporter activity1.77E-02
110GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.88E-02
111GO:0022891: substrate-specific transmembrane transporter activity2.14E-02
112GO:0015035: protein disulfide oxidoreductase activity2.26E-02
113GO:0003727: single-stranded RNA binding2.27E-02
114GO:0047134: protein-disulfide reductase activity2.41E-02
115GO:0019843: rRNA binding2.75E-02
116GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.78E-02
117GO:0005355: glucose transmembrane transporter activity2.83E-02
118GO:0015299: solute:proton antiporter activity2.83E-02
119GO:0050662: coenzyme binding2.83E-02
120GO:0004791: thioredoxin-disulfide reductase activity2.83E-02
121GO:0016853: isomerase activity2.83E-02
122GO:0030246: carbohydrate binding2.86E-02
123GO:0004872: receptor activity2.97E-02
124GO:0030170: pyridoxal phosphate binding3.05E-02
125GO:0048038: quinone binding3.12E-02
126GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-02
127GO:0000156: phosphorelay response regulator activity3.42E-02
128GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.42E-02
129GO:0016791: phosphatase activity3.58E-02
130GO:0016597: amino acid binding3.89E-02
131GO:0015250: water channel activity4.05E-02
132GO:0016798: hydrolase activity, acting on glycosyl bonds4.55E-02
133GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.72E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009507: chloroplast1.14E-32
3GO:0009534: chloroplast thylakoid1.69E-22
4GO:0009535: chloroplast thylakoid membrane3.80E-17
5GO:0009941: chloroplast envelope1.53E-14
6GO:0009570: chloroplast stroma4.61E-08
7GO:0031969: chloroplast membrane2.53E-07
8GO:0010287: plastoglobule1.02E-06
9GO:0009579: thylakoid3.54E-06
10GO:0009543: chloroplast thylakoid lumen1.70E-05
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.73E-05
12GO:0031977: thylakoid lumen2.16E-04
13GO:0048046: apoplast2.32E-04
14GO:0009515: granal stacked thylakoid3.11E-04
15GO:0009501: amyloplast3.21E-04
16GO:0009569: chloroplast starch grain6.81E-04
17GO:0043036: starch grain6.81E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex6.81E-04
19GO:0010007: magnesium chelatase complex1.10E-03
20GO:0009509: chromoplast1.10E-03
21GO:0030076: light-harvesting complex1.22E-03
22GO:0042651: thylakoid membrane1.66E-03
23GO:0009517: PSII associated light-harvesting complex II2.12E-03
24GO:0009522: photosystem I3.20E-03
25GO:0009523: photosystem II3.43E-03
26GO:0010319: stromule4.73E-03
27GO:0031982: vesicle5.53E-03
28GO:0008180: COP9 signalosome7.19E-03
29GO:0016459: myosin complex9.00E-03
30GO:0032040: small-subunit processome1.10E-02
31GO:0005773: vacuole1.20E-02
32GO:0030095: chloroplast photosystem II1.31E-02
33GO:0043234: protein complex1.53E-02
34GO:0005623: cell2.82E-02
35GO:0019005: SCF ubiquitin ligase complex4.89E-02
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Gene type



Gene DE type