co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:0015843: methylammonium transport	0.00E+00
3	GO:0043488: regulation of mRNA stability	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0016118: carotenoid catabolic process	0.00E+00
6	GO:0015882: L-ascorbic acid transport	0.00E+00
7	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
8	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
9	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
10	GO:0009657: plastid organization	2.85E-06
11	GO:0009854: oxidative photosynthetic carbon pathway	7.58E-05
12	GO:0019252: starch biosynthetic process	1.18E-04
13	GO:0009658: chloroplast organization	1.29E-04
14	GO:0065002: intracellular protein transmembrane transport	1.71E-04
15	GO:0010028: xanthophyll cycle	1.71E-04
16	GO:0043953: protein transport by the Tat complex	1.71E-04
17	GO:0000476: maturation of 4.5S rRNA	1.71E-04
18	GO:0000967: rRNA 5'-end processing	1.71E-04
19	GO:0046467: membrane lipid biosynthetic process	1.71E-04
20	GO:0006637: acyl-CoA metabolic process	1.71E-04
21	GO:0005982: starch metabolic process	2.37E-04
22	GO:0010218: response to far red light	3.58E-04
23	GO:0016121: carotene catabolic process	3.87E-04
24	GO:0034470: ncRNA processing	3.87E-04
25	GO:0051645: Golgi localization	3.87E-04
26	GO:2000030: regulation of response to red or far red light	3.87E-04
27	GO:0071457: cellular response to ozone	3.87E-04
28	GO:0016124: xanthophyll catabolic process	3.87E-04
29	GO:0010541: acropetal auxin transport	3.87E-04
30	GO:0060151: peroxisome localization	3.87E-04
31	GO:0000256: allantoin catabolic process	3.87E-04
32	GO:0030048: actin filament-based movement	4.24E-04
33	GO:0009637: response to blue light	4.29E-04
34	GO:0010020: chloroplast fission	4.79E-04
35	GO:0010114: response to red light	5.92E-04
36	GO:0005977: glycogen metabolic process	6.32E-04
37	GO:0051646: mitochondrion localization	6.32E-04
38	GO:0010160: formation of animal organ boundary	6.32E-04
39	GO:0090391: granum assembly	6.32E-04
40	GO:0010136: ureide catabolic process	6.32E-04
41	GO:0090436: leaf pavement cell development	6.32E-04
42	GO:0009768: photosynthesis, light harvesting in photosystem I	7.27E-04
43	GO:0019748: secondary metabolic process	8.69E-04
44	GO:0071484: cellular response to light intensity	9.04E-04
45	GO:0009152: purine ribonucleotide biosynthetic process	9.04E-04
46	GO:0046653: tetrahydrofolate metabolic process	9.04E-04
47	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.04E-04
48	GO:0006145: purine nucleobase catabolic process	9.04E-04
49	GO:0010731: protein glutathionylation	9.04E-04
50	GO:0015696: ammonium transport	9.04E-04
51	GO:0010021: amylopectin biosynthetic process	1.20E-03
52	GO:0010037: response to carbon dioxide	1.20E-03
53	GO:0015976: carbon utilization	1.20E-03
54	GO:0071486: cellular response to high light intensity	1.20E-03
55	GO:0015689: molybdate ion transport	1.20E-03
56	GO:0009765: photosynthesis, light harvesting	1.20E-03
57	GO:0072488: ammonium transmembrane transport	1.20E-03
58	GO:2000122: negative regulation of stomatal complex development	1.20E-03
59	GO:0006021: inositol biosynthetic process	1.20E-03
60	GO:0015979: photosynthesis	1.40E-03
61	GO:0071493: cellular response to UV-B	1.52E-03
62	GO:0043097: pyrimidine nucleoside salvage	1.52E-03
63	GO:0006564: L-serine biosynthetic process	1.52E-03
64	GO:0009643: photosynthetic acclimation	1.87E-03
65	GO:0050665: hydrogen peroxide biosynthetic process	1.87E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.87E-03
67	GO:0006206: pyrimidine nucleobase metabolic process	1.87E-03
68	GO:0009228: thiamine biosynthetic process	1.87E-03
69	GO:0046855: inositol phosphate dephosphorylation	1.87E-03
70	GO:0060918: auxin transport	1.87E-03
71	GO:0009058: biosynthetic process	1.89E-03
72	GO:0071333: cellular response to glucose stimulus	2.24E-03
73	GO:1900056: negative regulation of leaf senescence	2.64E-03
74	GO:0009769: photosynthesis, light harvesting in photosystem II	2.64E-03
75	GO:0009645: response to low light intensity stimulus	2.64E-03
76	GO:0018298: protein-chromophore linkage	2.94E-03
77	GO:0016559: peroxisome fission	3.06E-03
78	GO:0070413: trehalose metabolism in response to stress	3.06E-03
79	GO:0071482: cellular response to light stimulus	3.50E-03
80	GO:0019430: removal of superoxide radicals	3.50E-03
81	GO:0010204: defense response signaling pathway, resistance gene-independent	3.50E-03
82	GO:0009853: photorespiration	3.71E-03
83	GO:0034599: cellular response to oxidative stress	3.88E-03
84	GO:0098656: anion transmembrane transport	3.95E-03
85	GO:0006098: pentose-phosphate shunt	3.95E-03
86	GO:0009821: alkaloid biosynthetic process	3.95E-03
87	GO:0010380: regulation of chlorophyll biosynthetic process	4.44E-03
88	GO:0009636: response to toxic substance	5.37E-03
89	GO:0018119: peptidyl-cysteine S-nitrosylation	5.45E-03
90	GO:0009773: photosynthetic electron transport in photosystem I	5.45E-03
91	GO:0006415: translational termination	5.45E-03
92	GO:0072593: reactive oxygen species metabolic process	5.45E-03
93	GO:0008361: regulation of cell size	5.98E-03
94	GO:0006790: sulfur compound metabolic process	5.98E-03
95	GO:0080167: response to karrikin	6.06E-03
96	GO:0006094: gluconeogenesis	6.54E-03
97	GO:0009767: photosynthetic electron transport chain	6.54E-03
98	GO:0010540: basipetal auxin transport	7.11E-03
99	GO:0048467: gynoecium development	7.11E-03
100	GO:0019253: reductive pentose-phosphate cycle	7.11E-03
101	GO:0010207: photosystem II assembly	7.11E-03
102	GO:0046854: phosphatidylinositol phosphorylation	7.69E-03
103	GO:0019853: L-ascorbic acid biosynthetic process	7.69E-03
104	GO:0005975: carbohydrate metabolic process	8.16E-03
105	GO:0009833: plant-type primary cell wall biogenesis	8.30E-03
106	GO:0006636: unsaturated fatty acid biosynthetic process	8.30E-03
107	GO:0005992: trehalose biosynthetic process	8.92E-03
108	GO:0009624: response to nematode	9.16E-03
109	GO:0019915: lipid storage	1.02E-02
110	GO:0009269: response to desiccation	1.02E-02
111	GO:0016114: terpenoid biosynthetic process	1.02E-02
112	GO:0003333: amino acid transmembrane transport	1.02E-02
113	GO:0030433: ubiquitin-dependent ERAD pathway	1.09E-02
114	GO:0071215: cellular response to abscisic acid stimulus	1.16E-02
115	GO:0009306: protein secretion	1.23E-02
116	GO:0048443: stamen development	1.23E-02
117	GO:0042631: cellular response to water deprivation	1.37E-02
118	GO:0071472: cellular response to salt stress	1.45E-02
119	GO:0010154: fruit development	1.45E-02
120	GO:0009958: positive gravitropism	1.45E-02
121	GO:0006520: cellular amino acid metabolic process	1.45E-02
122	GO:0007059: chromosome segregation	1.52E-02
123	GO:0009791: post-embryonic development	1.60E-02
124	GO:0032502: developmental process	1.76E-02
125	GO:0009630: gravitropism	1.76E-02
126	GO:0007264: small GTPase mediated signal transduction	1.76E-02
127	GO:1901657: glycosyl compound metabolic process	1.84E-02
128	GO:0010090: trichome morphogenesis	1.84E-02
129	GO:0009567: double fertilization forming a zygote and endosperm	1.93E-02
130	GO:0009639: response to red or far red light	1.93E-02
131	GO:0010027: thylakoid membrane organization	2.18E-02
132	GO:0015995: chlorophyll biosynthetic process	2.45E-02
133	GO:0016311: dephosphorylation	2.55E-02
134	GO:0016049: cell growth	2.55E-02
135	GO:0006810: transport	2.56E-02
136	GO:0030244: cellulose biosynthetic process	2.64E-02
137	GO:0006811: ion transport	2.83E-02
138	GO:0009407: toxin catabolic process	2.83E-02
139	GO:0009910: negative regulation of flower development	2.93E-02
140	GO:0048527: lateral root development	2.93E-02
141	GO:0010119: regulation of stomatal movement	2.93E-02
142	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.16E-02
143	GO:0009926: auxin polar transport	3.74E-02
144	GO:0009640: photomorphogenesis	3.74E-02
145	GO:0000209: protein polyubiquitination	3.85E-02
146	GO:0009644: response to high light intensity	3.96E-02
147	GO:0006364: rRNA processing	4.62E-02
148	GO:0006813: potassium ion transport	4.62E-02
149	GO:0055114: oxidation-reduction process	4.67E-02
150	GO:0006397: mRNA processing	4.68E-02
151	GO:0051603: proteolysis involved in cellular protein catabolic process	4.74E-02
152	GO:0006417: regulation of translation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
7	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0009011: starch synthase activity	2.25E-05
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.71E-04
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.87E-04
11	GO:0004617: phosphoglycerate dehydrogenase activity	3.87E-04
12	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	3.87E-04
13	GO:0052832: inositol monophosphate 3-phosphatase activity	3.87E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	3.87E-04
15	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.87E-04
16	GO:0008934: inositol monophosphate 1-phosphatase activity	3.87E-04
17	GO:0052833: inositol monophosphate 4-phosphatase activity	3.87E-04
18	GO:0019156: isoamylase activity	3.87E-04
19	GO:0003774: motor activity	4.79E-04
20	GO:0004185: serine-type carboxypeptidase activity	5.92E-04
21	GO:0031409: pigment binding	5.97E-04
22	GO:0042802: identical protein binding	6.19E-04
23	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.32E-04
24	GO:0008864: formyltetrahydrofolate deformylase activity	6.32E-04
25	GO:0004373: glycogen (starch) synthase activity	6.32E-04
26	GO:0004848: ureidoglycolate hydrolase activity	6.32E-04
27	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	9.04E-04
28	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	9.04E-04
29	GO:0022890: inorganic cation transmembrane transporter activity	9.04E-04
30	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	9.04E-04
31	GO:0008891: glycolate oxidase activity	1.20E-03
32	GO:0004045: aminoacyl-tRNA hydrolase activity	1.20E-03
33	GO:0015098: molybdate ion transmembrane transporter activity	1.20E-03
34	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.52E-03
35	GO:0008519: ammonium transmembrane transporter activity	1.87E-03
36	GO:2001070: starch binding	1.87E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	1.87E-03
38	GO:0004784: superoxide dismutase activity	1.87E-03
39	GO:0042578: phosphoric ester hydrolase activity	1.87E-03
40	GO:0004556: alpha-amylase activity	1.87E-03
41	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.24E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.24E-03
43	GO:0004849: uridine kinase activity	2.24E-03
44	GO:0003730: mRNA 3'-UTR binding	2.24E-03
45	GO:0016168: chlorophyll binding	2.39E-03
46	GO:0019899: enzyme binding	2.64E-03
47	GO:0003993: acid phosphatase activity	3.88E-03
48	GO:0003747: translation release factor activity	3.95E-03
49	GO:0047617: acyl-CoA hydrolase activity	4.44E-03
50	GO:0016844: strictosidine synthase activity	4.44E-03
51	GO:0015174: basic amino acid transmembrane transporter activity	4.44E-03
52	GO:0004364: glutathione transferase activity	4.59E-03
53	GO:0015386: potassium:proton antiporter activity	5.45E-03
54	GO:0051287: NAD binding	5.78E-03
55	GO:0016491: oxidoreductase activity	6.37E-03
56	GO:0005315: inorganic phosphate transmembrane transporter activity	6.54E-03
57	GO:0004089: carbonate dehydratase activity	6.54E-03
58	GO:0004565: beta-galactosidase activity	6.54E-03
59	GO:0010329: auxin efflux transmembrane transporter activity	6.54E-03
60	GO:0003725: double-stranded RNA binding	6.54E-03
61	GO:0008266: poly(U) RNA binding	7.11E-03
62	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.11E-03
63	GO:0015171: amino acid transmembrane transporter activity	7.12E-03
64	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	7.86E-03
65	GO:0005528: FK506 binding	8.92E-03
66	GO:0005216: ion channel activity	9.56E-03
67	GO:0015079: potassium ion transmembrane transporter activity	9.56E-03
68	GO:0016760: cellulose synthase (UDP-forming) activity	1.16E-02
69	GO:0003727: single-stranded RNA binding	1.23E-02
70	GO:0008514: organic anion transmembrane transporter activity	1.23E-02
71	GO:0015299: solute:proton antiporter activity	1.52E-02
72	GO:0010181: FMN binding	1.52E-02
73	GO:0016759: cellulose synthase activity	1.93E-02
74	GO:0016791: phosphatase activity	1.93E-02
75	GO:0008237: metallopeptidase activity	2.01E-02
76	GO:0016597: amino acid binding	2.10E-02
77	GO:0102483: scopolin beta-glucosidase activity	2.45E-02
78	GO:0016788: hydrolase activity, acting on ester bonds	2.51E-02
79	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.93E-02
80	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.33E-02
81	GO:0008422: beta-glucosidase activity	3.33E-02
82	GO:0004871: signal transducer activity	3.82E-02
83	GO:0005525: GTP binding	3.83E-02
84	GO:0043621: protein self-association	3.96E-02
85	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.17E-02
86	GO:0031625: ubiquitin protein ligase binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	3.22E-15
3	GO:0033281: TAT protein transport complex	5.25E-06
4	GO:0009570: chloroplast stroma	1.74E-05
5	GO:0009535: chloroplast thylakoid membrane	2.30E-05
6	GO:0009941: chloroplast envelope	8.19E-05
7	GO:0009522: photosystem I	1.06E-04
8	GO:0009344: nitrite reductase complex [NAD(P)H]	1.71E-04
9	GO:0031361: integral component of thylakoid membrane	1.71E-04
10	GO:0031969: chloroplast membrane	1.99E-04
11	GO:0009543: chloroplast thylakoid lumen	2.55E-04
12	GO:0016459: myosin complex	2.80E-04
13	GO:0043036: starch grain	3.87E-04
14	GO:0005773: vacuole	4.34E-04
15	GO:0030076: light-harvesting complex	5.37E-04
16	GO:0030658: transport vesicle membrane	9.04E-04
17	GO:0009517: PSII associated light-harvesting complex II	1.20E-03
18	GO:0009526: plastid envelope	1.20E-03
19	GO:0009523: photosystem II	1.47E-03
20	GO:0009579: thylakoid	1.56E-03
21	GO:0010287: plastoglobule	1.65E-03
22	GO:0009501: amyloplast	3.06E-03
23	GO:0031977: thylakoid lumen	4.41E-03
24	GO:0005765: lysosomal membrane	5.45E-03
25	GO:0005777: peroxisome	6.11E-03
26	GO:0009534: chloroplast thylakoid	6.60E-03
27	GO:0030095: chloroplast photosystem II	7.11E-03
28	GO:0009654: photosystem II oxygen evolving complex	9.56E-03
29	GO:0005886: plasma membrane	1.28E-02
30	GO:0048046: apoplast	1.31E-02
31	GO:0019898: extrinsic component of membrane	1.60E-02
32	GO:0010319: stromule	2.01E-02
33	GO:0030529: intracellular ribonucleoprotein complex	2.18E-02
34	GO:0009707: chloroplast outer membrane	2.64E-02
35	GO:0005819: spindle	3.33E-02
36	GO:0031902: late endosome membrane	3.53E-02