co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G76100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
10	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
11	GO:0009773: photosynthetic electron transport in photosystem I	4.08E-07
12	GO:0015979: photosynthesis	1.53E-06
13	GO:0032544: plastid translation	7.32E-06
14	GO:0043085: positive regulation of catalytic activity	2.33E-05
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.38E-05
16	GO:0015995: chlorophyll biosynthetic process	4.82E-05
17	GO:0010190: cytochrome b6f complex assembly	1.01E-04
18	GO:0000476: maturation of 4.5S rRNA	2.51E-04
19	GO:0009443: pyridoxal 5'-phosphate salvage	2.51E-04
20	GO:0000967: rRNA 5'-end processing	2.51E-04
21	GO:0046467: membrane lipid biosynthetic process	2.51E-04
22	GO:0015671: oxygen transport	2.51E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.51E-04
24	GO:0019544: arginine catabolic process to glutamate	2.51E-04
25	GO:0000481: maturation of 5S rRNA	2.51E-04
26	GO:0006659: phosphatidylserine biosynthetic process	2.51E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	2.51E-04
28	GO:0019252: starch biosynthetic process	2.51E-04
29	GO:0042371: vitamin K biosynthetic process	2.51E-04
30	GO:0071461: cellular response to redox state	2.51E-04
31	GO:0034337: RNA folding	2.51E-04
32	GO:0071482: cellular response to light stimulus	2.86E-04
33	GO:0055114: oxidation-reduction process	4.10E-04
34	GO:0009629: response to gravity	5.53E-04
35	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.53E-04
36	GO:0080005: photosystem stoichiometry adjustment	5.53E-04
37	GO:0071457: cellular response to ozone	5.53E-04
38	GO:0010541: acropetal auxin transport	5.53E-04
39	GO:0051262: protein tetramerization	5.53E-04
40	GO:0034470: ncRNA processing	5.53E-04
41	GO:0019684: photosynthesis, light reaction	5.54E-04
42	GO:0009767: photosynthetic electron transport chain	7.18E-04
43	GO:0010207: photosystem II assembly	8.08E-04
44	GO:0034599: cellular response to oxidative stress	8.97E-04
45	GO:0006954: inflammatory response	8.99E-04
46	GO:0090391: granum assembly	8.99E-04
47	GO:0010160: formation of animal organ boundary	8.99E-04
48	GO:0005977: glycogen metabolic process	8.99E-04
49	GO:0048281: inflorescence morphogenesis	8.99E-04
50	GO:0010114: response to red light	1.16E-03
51	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.28E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.28E-03
53	GO:0010731: protein glutathionylation	1.28E-03
54	GO:0010148: transpiration	1.28E-03
55	GO:0006986: response to unfolded protein	1.28E-03
56	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.28E-03
57	GO:2001141: regulation of RNA biosynthetic process	1.28E-03
58	GO:0071484: cellular response to light intensity	1.28E-03
59	GO:0051085: chaperone mediated protein folding requiring cofactor	1.28E-03
60	GO:2000122: negative regulation of stomatal complex development	1.71E-03
61	GO:0031122: cytoplasmic microtubule organization	1.71E-03
62	GO:0006546: glycine catabolic process	1.71E-03
63	GO:0006021: inositol biosynthetic process	1.71E-03
64	GO:0010021: amylopectin biosynthetic process	1.71E-03
65	GO:0010037: response to carbon dioxide	1.71E-03
66	GO:0015976: carbon utilization	1.71E-03
67	GO:0071486: cellular response to high light intensity	1.71E-03
68	GO:0009765: photosynthesis, light harvesting	1.71E-03
69	GO:0006109: regulation of carbohydrate metabolic process	1.71E-03
70	GO:0015994: chlorophyll metabolic process	1.71E-03
71	GO:0006810: transport	2.07E-03
72	GO:0009958: positive gravitropism	2.18E-03
73	GO:0006662: glycerol ether metabolic process	2.18E-03
74	GO:0071493: cellular response to UV-B	2.19E-03
75	GO:0006564: L-serine biosynthetic process	2.19E-03
76	GO:0006465: signal peptide processing	2.19E-03
77	GO:0009735: response to cytokinin	2.56E-03
78	GO:0060918: auxin transport	2.70E-03
79	GO:0050665: hydrogen peroxide biosynthetic process	2.70E-03
80	GO:0042549: photosystem II stabilization	2.70E-03
81	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.70E-03
82	GO:1901259: chloroplast rRNA processing	3.24E-03
83	GO:0009854: oxidative photosynthetic carbon pathway	3.24E-03
84	GO:0010019: chloroplast-nucleus signaling pathway	3.24E-03
85	GO:0009955: adaxial/abaxial pattern specification	3.24E-03
86	GO:0070370: cellular heat acclimation	3.82E-03
87	GO:0009769: photosynthesis, light harvesting in photosystem II	3.82E-03
88	GO:0009645: response to low light intensity stimulus	3.82E-03
89	GO:0010103: stomatal complex morphogenesis	3.82E-03
90	GO:0009772: photosynthetic electron transport in photosystem II	3.82E-03
91	GO:0010027: thylakoid membrane organization	3.87E-03
92	GO:0010078: maintenance of root meristem identity	4.44E-03
93	GO:0032508: DNA duplex unwinding	4.44E-03
94	GO:0031540: regulation of anthocyanin biosynthetic process	4.44E-03
95	GO:0052543: callose deposition in cell wall	4.44E-03
96	GO:0016559: peroxisome fission	4.44E-03
97	GO:0007155: cell adhesion	4.44E-03
98	GO:0048564: photosystem I assembly	4.44E-03
99	GO:0018298: protein-chromophore linkage	5.04E-03
100	GO:0019430: removal of superoxide radicals	5.08E-03
101	GO:0001558: regulation of cell growth	5.08E-03
102	GO:0009657: plastid organization	5.08E-03
103	GO:0010204: defense response signaling pathway, resistance gene-independent	5.08E-03
104	GO:0043562: cellular response to nitrogen levels	5.08E-03
105	GO:0017004: cytochrome complex assembly	5.08E-03
106	GO:0009813: flavonoid biosynthetic process	5.30E-03
107	GO:0010218: response to far red light	5.56E-03
108	GO:0019432: triglyceride biosynthetic process	5.75E-03
109	GO:0048527: lateral root development	5.83E-03
110	GO:0009637: response to blue light	6.39E-03
111	GO:0005982: starch metabolic process	6.46E-03
112	GO:0006779: porphyrin-containing compound biosynthetic process	6.46E-03
113	GO:0005975: carbohydrate metabolic process	6.99E-03
114	GO:0006782: protoporphyrinogen IX biosynthetic process	7.20E-03
115	GO:0019538: protein metabolic process	7.20E-03
116	GO:0006949: syncytium formation	7.20E-03
117	GO:0009089: lysine biosynthetic process via diaminopimelate	7.96E-03
118	GO:0006415: translational termination	7.96E-03
119	GO:0006352: DNA-templated transcription, initiation	7.96E-03
120	GO:0009684: indoleacetic acid biosynthetic process	7.96E-03
121	GO:0009926: auxin polar transport	8.24E-03
122	GO:0016024: CDP-diacylglycerol biosynthetic process	8.75E-03
123	GO:0008361: regulation of cell size	8.75E-03
124	GO:0010588: cotyledon vascular tissue pattern formation	9.57E-03
125	GO:0010143: cutin biosynthetic process	1.04E-02
126	GO:0010020: chloroplast fission	1.04E-02
127	GO:0009664: plant-type cell wall organization	1.04E-02
128	GO:0010540: basipetal auxin transport	1.04E-02
129	GO:0048467: gynoecium development	1.04E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	1.15E-02
131	GO:0006636: unsaturated fatty acid biosynthetic process	1.22E-02
132	GO:0080167: response to karrikin	1.22E-02
133	GO:0006412: translation	1.28E-02
134	GO:0009944: polarity specification of adaxial/abaxial axis	1.31E-02
135	GO:0007017: microtubule-based process	1.41E-02
136	GO:0009768: photosynthesis, light harvesting in photosystem I	1.41E-02
137	GO:0051302: regulation of cell division	1.41E-02
138	GO:0019915: lipid storage	1.50E-02
139	GO:0009269: response to desiccation	1.50E-02
140	GO:0016226: iron-sulfur cluster assembly	1.60E-02
141	GO:0030245: cellulose catabolic process	1.60E-02
142	GO:0009686: gibberellin biosynthetic process	1.71E-02
143	GO:0001944: vasculature development	1.71E-02
144	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.71E-02
145	GO:0009409: response to cold	1.73E-02
146	GO:0048443: stamen development	1.81E-02
147	GO:0009306: protein secretion	1.81E-02
148	GO:0016117: carotenoid biosynthetic process	1.92E-02
149	GO:0080022: primary root development	2.02E-02
150	GO:0010087: phloem or xylem histogenesis	2.02E-02
151	GO:0010118: stomatal movement	2.02E-02
152	GO:0006520: cellular amino acid metabolic process	2.14E-02
153	GO:0071472: cellular response to salt stress	2.14E-02
154	GO:0010268: brassinosteroid homeostasis	2.14E-02
155	GO:0015986: ATP synthesis coupled proton transport	2.25E-02
156	GO:0009791: post-embryonic development	2.36E-02
157	GO:0048825: cotyledon development	2.36E-02
158	GO:0008654: phospholipid biosynthetic process	2.36E-02
159	GO:0009851: auxin biosynthetic process	2.36E-02
160	GO:0071554: cell wall organization or biogenesis	2.48E-02
161	GO:0016132: brassinosteroid biosynthetic process	2.48E-02
162	GO:0032502: developmental process	2.60E-02
163	GO:1901657: glycosyl compound metabolic process	2.72E-02
164	GO:0009639: response to red or far red light	2.85E-02
165	GO:0009828: plant-type cell wall loosening	2.85E-02
166	GO:0016125: sterol metabolic process	2.85E-02
167	GO:0042742: defense response to bacterium	3.25E-02
168	GO:0042128: nitrate assimilation	3.49E-02
169	GO:0016311: dephosphorylation	3.76E-02
170	GO:0009817: defense response to fungus, incompatible interaction	3.90E-02
171	GO:0010119: regulation of stomatal movement	4.32E-02
172	GO:0009631: cold acclimation	4.32E-02
173	GO:0009853: photorespiration	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
8	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
9	GO:0009011: starch synthase activity	4.33E-05
10	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.33E-05
11	GO:0019843: rRNA binding	8.17E-05
12	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.39E-04
13	GO:0019899: enzyme binding	1.82E-04
14	GO:0051777: ent-kaurenoate oxidase activity	2.51E-04
15	GO:0008568: microtubule-severing ATPase activity	2.51E-04
16	GO:0005080: protein kinase C binding	2.51E-04
17	GO:0004328: formamidase activity	2.51E-04
18	GO:0005344: oxygen transporter activity	2.51E-04
19	GO:0046906: tetrapyrrole binding	2.51E-04
20	GO:0005227: calcium activated cation channel activity	2.51E-04
21	GO:0008047: enzyme activator activity	4.80E-04
22	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.53E-04
23	GO:0019156: isoamylase activity	5.53E-04
24	GO:0004512: inositol-3-phosphate synthase activity	5.53E-04
25	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.53E-04
26	GO:0047746: chlorophyllase activity	5.53E-04
27	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.53E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	5.53E-04
29	GO:0004047: aminomethyltransferase activity	5.53E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	5.53E-04
31	GO:0004312: fatty acid synthase activity	5.53E-04
32	GO:0004373: glycogen (starch) synthase activity	8.99E-04
33	GO:0004751: ribose-5-phosphate isomerase activity	8.99E-04
34	GO:0070402: NADPH binding	8.99E-04
35	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.99E-04
36	GO:0016149: translation release factor activity, codon specific	1.28E-03
37	GO:0016851: magnesium chelatase activity	1.28E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.28E-03
39	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.28E-03
40	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.28E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	1.28E-03
42	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.28E-03
43	GO:0016491: oxidoreductase activity	1.63E-03
44	GO:0045430: chalcone isomerase activity	1.71E-03
45	GO:0019199: transmembrane receptor protein kinase activity	1.71E-03
46	GO:0043495: protein anchor	1.71E-03
47	GO:0042277: peptide binding	1.71E-03
48	GO:0008891: glycolate oxidase activity	1.71E-03
49	GO:0001053: plastid sigma factor activity	1.71E-03
50	GO:0008453: alanine-glyoxylate transaminase activity	1.71E-03
51	GO:0004045: aminoacyl-tRNA hydrolase activity	1.71E-03
52	GO:0016987: sigma factor activity	1.71E-03
53	GO:0047134: protein-disulfide reductase activity	1.87E-03
54	GO:0016846: carbon-sulfur lyase activity	2.19E-03
55	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-03
56	GO:0048038: quinone binding	2.68E-03
57	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.70E-03
58	GO:0004784: superoxide dismutase activity	2.70E-03
59	GO:0004556: alpha-amylase activity	2.70E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.70E-03
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-03
62	GO:0005261: cation channel activity	3.24E-03
63	GO:0003735: structural constituent of ribosome	4.02E-03
64	GO:0016168: chlorophyll binding	4.09E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	4.44E-03
66	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.87E-03
67	GO:0003747: translation release factor activity	5.75E-03
68	GO:0042802: identical protein binding	7.20E-03
69	GO:0047372: acylglycerol lipase activity	7.96E-03
70	GO:0004185: serine-type carboxypeptidase activity	8.24E-03
71	GO:0008378: galactosyltransferase activity	8.75E-03
72	GO:0051537: 2 iron, 2 sulfur cluster binding	8.92E-03
73	GO:0005509: calcium ion binding	8.93E-03
74	GO:0004565: beta-galactosidase activity	9.57E-03
75	GO:0010329: auxin efflux transmembrane transporter activity	9.57E-03
76	GO:0004022: alcohol dehydrogenase (NAD) activity	9.57E-03
77	GO:0004089: carbonate dehydratase activity	9.57E-03
78	GO:0031072: heat shock protein binding	9.57E-03
79	GO:0008266: poly(U) RNA binding	1.04E-02
80	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.04E-02
81	GO:0031409: pigment binding	1.22E-02
82	GO:0051536: iron-sulfur cluster binding	1.31E-02
83	GO:0004857: enzyme inhibitor activity	1.31E-02
84	GO:0005528: FK506 binding	1.31E-02
85	GO:0051087: chaperone binding	1.41E-02
86	GO:0051082: unfolded protein binding	1.59E-02
87	GO:0015035: protein disulfide oxidoreductase activity	1.64E-02
88	GO:0008810: cellulase activity	1.71E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	1.71E-02
90	GO:0003727: single-stranded RNA binding	1.81E-02
91	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.14E-02
92	GO:0009055: electron carrier activity	2.18E-02
93	GO:0010181: FMN binding	2.25E-02
94	GO:0016791: phosphatase activity	2.85E-02
95	GO:0008483: transaminase activity	2.97E-02
96	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.97E-02
97	GO:0005200: structural constituent of cytoskeleton	2.97E-02
98	GO:0008289: lipid binding	3.01E-02
99	GO:0016597: amino acid binding	3.10E-02
100	GO:0016413: O-acetyltransferase activity	3.10E-02
101	GO:0016887: ATPase activity	3.44E-02
102	GO:0004721: phosphoprotein phosphatase activity	3.62E-02
103	GO:0030247: polysaccharide binding	3.62E-02
104	GO:0102483: scopolin beta-glucosidase activity	3.62E-02
105	GO:0003824: catalytic activity	3.72E-02
106	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.76E-02
107	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.32E-02
108	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.76E-02
109	GO:0003993: acid phosphatase activity	4.76E-02
110	GO:0008422: beta-glucosidase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	4.12E-36
3	GO:0009535: chloroplast thylakoid membrane	1.31E-23
4	GO:0009570: chloroplast stroma	1.55E-18
5	GO:0009579: thylakoid	2.66E-12
6	GO:0009941: chloroplast envelope	2.83E-12
7	GO:0009654: photosystem II oxygen evolving complex	7.45E-10
8	GO:0009543: chloroplast thylakoid lumen	7.88E-10
9	GO:0009534: chloroplast thylakoid	7.47E-09
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.25E-07
11	GO:0019898: extrinsic component of membrane	4.35E-07
12	GO:0031977: thylakoid lumen	8.56E-06
13	GO:0030095: chloroplast photosystem II	4.43E-05
14	GO:0005787: signal peptidase complex	2.51E-04
15	GO:0009523: photosystem II	2.51E-04
16	GO:0009547: plastid ribosome	2.51E-04
17	GO:0005840: ribosome	2.73E-04
18	GO:0010007: magnesium chelatase complex	8.99E-04
19	GO:0033281: TAT protein transport complex	8.99E-04
20	GO:0042651: thylakoid membrane	1.22E-03
21	GO:0009517: PSII associated light-harvesting complex II	1.71E-03
22	GO:0009522: photosystem I	2.34E-03
23	GO:0031969: chloroplast membrane	2.63E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.70E-03
25	GO:0010319: stromule	3.44E-03
26	GO:0009501: amyloplast	4.44E-03
27	GO:0009539: photosystem II reaction center	5.08E-03
28	GO:0045298: tubulin complex	5.75E-03
29	GO:0005763: mitochondrial small ribosomal subunit	5.75E-03
30	GO:0000311: plastid large ribosomal subunit	8.75E-03
31	GO:0032040: small-subunit processome	8.75E-03
32	GO:0009508: plastid chromosome	9.57E-03
33	GO:0030076: light-harvesting complex	1.13E-02
34	GO:0005777: peroxisome	1.40E-02
35	GO:0048046: apoplast	1.46E-02
36	GO:0005618: cell wall	1.75E-02
37	GO:0010287: plastoglobule	1.89E-02
38	GO:0009295: nucleoid	2.97E-02
39	GO:0030529: intracellular ribonucleoprotein complex	3.23E-02
40	GO:0046658: anchored component of plasma membrane	3.64E-02
41	GO:0009707: chloroplast outer membrane	3.90E-02