co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046680: response to DDT	0.00E+00
2	GO:0002084: protein depalmitoylation	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0046686: response to cadmium ion	5.97E-05
5	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.31E-04
6	GO:0000032: cell wall mannoprotein biosynthetic process	1.31E-04
7	GO:1900384: regulation of flavonol biosynthetic process	1.31E-04
8	GO:0035266: meristem growth	1.31E-04
9	GO:0007292: female gamete generation	1.31E-04
10	GO:0042350: GDP-L-fucose biosynthetic process	1.31E-04
11	GO:0006511: ubiquitin-dependent protein catabolic process	2.13E-04
12	GO:0042853: L-alanine catabolic process	3.03E-04
13	GO:0051788: response to misfolded protein	3.03E-04
14	GO:0009156: ribonucleoside monophosphate biosynthetic process	3.03E-04
15	GO:0009805: coumarin biosynthetic process	3.03E-04
16	GO:0009225: nucleotide-sugar metabolic process	3.75E-04
17	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.99E-04
18	GO:0010253: UDP-rhamnose biosynthetic process	4.99E-04
19	GO:0006517: protein deglycosylation	4.99E-04
20	GO:0033591: response to L-ascorbic acid	4.99E-04
21	GO:0060968: regulation of gene silencing	4.99E-04
22	GO:0002679: respiratory burst involved in defense response	7.14E-04
23	GO:0009226: nucleotide-sugar biosynthetic process	7.14E-04
24	GO:0009298: GDP-mannose biosynthetic process	7.14E-04
25	GO:1902584: positive regulation of response to water deprivation	9.47E-04
26	GO:0010363: regulation of plant-type hypersensitive response	9.47E-04
27	GO:0033356: UDP-L-arabinose metabolic process	9.47E-04
28	GO:0009165: nucleotide biosynthetic process	9.47E-04
29	GO:0033320: UDP-D-xylose biosynthetic process	9.47E-04
30	GO:0045927: positive regulation of growth	1.20E-03
31	GO:0009823: cytokinin catabolic process	1.20E-03
32	GO:0005513: detection of calcium ion	1.20E-03
33	GO:0030163: protein catabolic process	1.25E-03
34	GO:0042732: D-xylose metabolic process	1.47E-03
35	GO:0042176: regulation of protein catabolic process	1.47E-03
36	GO:0010315: auxin efflux	1.47E-03
37	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.47E-03
38	GO:0048827: phyllome development	1.47E-03
39	GO:0048232: male gamete generation	1.47E-03
40	GO:0006555: methionine metabolic process	1.47E-03
41	GO:0043248: proteasome assembly	1.47E-03
42	GO:0009651: response to salt stress	1.67E-03
43	GO:0034389: lipid particle organization	1.76E-03
44	GO:0009612: response to mechanical stimulus	1.76E-03
45	GO:0019509: L-methionine salvage from methylthioadenosine	1.76E-03
46	GO:0080186: developmental vegetative growth	2.06E-03
47	GO:0006401: RNA catabolic process	2.06E-03
48	GO:0006744: ubiquinone biosynthetic process	2.06E-03
49	GO:0006499: N-terminal protein myristoylation	2.26E-03
50	GO:0010043: response to zinc ion	2.37E-03
51	GO:0006491: N-glycan processing	2.39E-03
52	GO:0010078: maintenance of root meristem identity	2.39E-03
53	GO:0050821: protein stabilization	2.39E-03
54	GO:0034599: cellular response to oxidative stress	2.70E-03
55	GO:0009699: phenylpropanoid biosynthetic process	2.73E-03
56	GO:0006002: fructose 6-phosphate metabolic process	2.73E-03
57	GO:0015996: chlorophyll catabolic process	2.73E-03
58	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.08E-03
59	GO:0046685: response to arsenic-containing substance	3.08E-03
60	GO:0015031: protein transport	3.14E-03
61	GO:0043067: regulation of programmed cell death	3.46E-03
62	GO:0051555: flavonol biosynthetic process	3.84E-03
63	GO:0048829: root cap development	3.84E-03
64	GO:0016192: vesicle-mediated transport	4.06E-03
65	GO:0006913: nucleocytoplasmic transport	4.24E-03
66	GO:0072593: reactive oxygen species metabolic process	4.24E-03
67	GO:0043085: positive regulation of catalytic activity	4.24E-03
68	GO:0046856: phosphatidylinositol dephosphorylation	4.24E-03
69	GO:0010015: root morphogenesis	4.24E-03
70	GO:0051603: proteolysis involved in cellular protein catabolic process	4.62E-03
71	GO:0000266: mitochondrial fission	4.65E-03
72	GO:0006790: sulfur compound metabolic process	4.65E-03
73	GO:0045454: cell redox homeostasis	4.78E-03
74	GO:0006886: intracellular protein transport	4.98E-03
75	GO:0055046: microgametogenesis	5.08E-03
76	GO:0009933: meristem structural organization	5.52E-03
77	GO:0019853: L-ascorbic acid biosynthetic process	5.97E-03
78	GO:0090351: seedling development	5.97E-03
79	GO:0046854: phosphatidylinositol phosphorylation	5.97E-03
80	GO:0010053: root epidermal cell differentiation	5.97E-03
81	GO:0034976: response to endoplasmic reticulum stress	6.43E-03
82	GO:0000027: ribosomal large subunit assembly	6.91E-03
83	GO:0009116: nucleoside metabolic process	6.91E-03
84	GO:0008299: isoprenoid biosynthetic process	7.40E-03
85	GO:0019915: lipid storage	7.91E-03
86	GO:0055114: oxidation-reduction process	8.24E-03
87	GO:0009814: defense response, incompatible interaction	8.42E-03
88	GO:0030433: ubiquitin-dependent ERAD pathway	8.42E-03
89	GO:0080092: regulation of pollen tube growth	8.42E-03
90	GO:0019748: secondary metabolic process	8.42E-03
91	GO:0071369: cellular response to ethylene stimulus	8.95E-03
92	GO:0009790: embryo development	9.28E-03
93	GO:0042127: regulation of cell proliferation	9.49E-03
94	GO:0042147: retrograde transport, endosome to Golgi	1.00E-02
95	GO:0071472: cellular response to salt stress	1.12E-02
96	GO:0006662: glycerol ether metabolic process	1.12E-02
97	GO:0009646: response to absence of light	1.18E-02
98	GO:0010183: pollen tube guidance	1.24E-02
99	GO:0000302: response to reactive oxygen species	1.30E-02
100	GO:0001666: response to hypoxia	1.68E-02
101	GO:0009816: defense response to bacterium, incompatible interaction	1.75E-02
102	GO:0009860: pollen tube growth	1.84E-02
103	GO:0009817: defense response to fungus, incompatible interaction	2.03E-02
104	GO:0030244: cellulose biosynthetic process	2.03E-02
105	GO:0010311: lateral root formation	2.11E-02
106	GO:0009832: plant-type cell wall biogenesis	2.11E-02
107	GO:0006811: ion transport	2.18E-02
108	GO:0007568: aging	2.25E-02
109	GO:0045087: innate immune response	2.41E-02
110	GO:0006631: fatty acid metabolic process	2.72E-02
111	GO:0009744: response to sucrose	2.88E-02
112	GO:0009408: response to heat	3.12E-02
113	GO:0009965: leaf morphogenesis	3.13E-02
114	GO:0006486: protein glycosylation	3.56E-02
115	GO:0006096: glycolytic process	4.01E-02
116	GO:0048316: seed development	4.11E-02
117	GO:0048367: shoot system development	4.11E-02
118	GO:0009626: plant-type hypersensitive response	4.20E-02
119	GO:0009553: embryo sac development	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	2.47E-05
5	GO:0102293: pheophytinase b activity	1.31E-04
6	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	1.31E-04
7	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.31E-04
8	GO:0004476: mannose-6-phosphate isomerase activity	1.31E-04
9	GO:0050577: GDP-L-fucose synthase activity	1.31E-04
10	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.03E-04
11	GO:0008805: carbon-monoxide oxygenase activity	3.03E-04
12	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.03E-04
13	GO:0047746: chlorophyllase activity	3.03E-04
14	GO:0010297: heteropolysaccharide binding	3.03E-04
15	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.03E-04
16	GO:0051879: Hsp90 protein binding	3.03E-04
17	GO:0010280: UDP-L-rhamnose synthase activity	3.03E-04
18	GO:0050347: trans-octaprenyltranstransferase activity	3.03E-04
19	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.99E-04
20	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.99E-04
21	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	7.14E-04
22	GO:0004749: ribose phosphate diphosphokinase activity	7.14E-04
23	GO:0047134: protein-disulfide reductase activity	7.82E-04
24	GO:0070628: proteasome binding	9.47E-04
25	GO:0004659: prenyltransferase activity	9.47E-04
26	GO:0004791: thioredoxin-disulfide reductase activity	9.69E-04
27	GO:0016853: isomerase activity	9.69E-04
28	GO:0019139: cytokinin dehydrogenase activity	1.20E-03
29	GO:0004130: cytochrome-c peroxidase activity	1.47E-03
30	GO:0031593: polyubiquitin binding	1.47E-03
31	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.47E-03
32	GO:0016688: L-ascorbate peroxidase activity	1.47E-03
33	GO:0036402: proteasome-activating ATPase activity	1.47E-03
34	GO:0048040: UDP-glucuronate decarboxylase activity	1.47E-03
35	GO:0008474: palmitoyl-(protein) hydrolase activity	1.47E-03
36	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.76E-03
37	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.76E-03
38	GO:0070403: NAD+ binding	1.76E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.85E-03
40	GO:0003872: 6-phosphofructokinase activity	2.06E-03
41	GO:0008320: protein transmembrane transporter activity	2.06E-03
42	GO:0003746: translation elongation factor activity	2.59E-03
43	GO:0008233: peptidase activity	3.73E-03
44	GO:0030234: enzyme regulator activity	3.84E-03
45	GO:0008047: enzyme activator activity	3.84E-03
46	GO:0004161: dimethylallyltranstransferase activity	4.24E-03
47	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.65E-03
48	GO:0031072: heat shock protein binding	5.08E-03
49	GO:0008131: primary amine oxidase activity	5.52E-03
50	GO:0017025: TBP-class protein binding	5.97E-03
51	GO:0004190: aspartic-type endopeptidase activity	5.97E-03
52	GO:0004867: serine-type endopeptidase inhibitor activity	5.97E-03
53	GO:0043130: ubiquitin binding	6.91E-03
54	GO:0008408: 3'-5' exonuclease activity	7.91E-03
55	GO:0003756: protein disulfide isomerase activity	9.49E-03
56	GO:0003824: catalytic activity	9.51E-03
57	GO:0016887: ATPase activity	1.09E-02
58	GO:0004527: exonuclease activity	1.12E-02
59	GO:0050662: coenzyme binding	1.18E-02
60	GO:0016491: oxidoreductase activity	1.25E-02
61	GO:0004518: nuclease activity	1.36E-02
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.42E-02
63	GO:0008237: metallopeptidase activity	1.55E-02
64	GO:0051213: dioxygenase activity	1.68E-02
65	GO:0008375: acetylglucosaminyltransferase activity	1.82E-02
66	GO:0030246: carbohydrate binding	1.88E-02
67	GO:0050660: flavin adenine dinucleotide binding	1.97E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.03E-02
69	GO:0005096: GTPase activator activity	2.11E-02
70	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.25E-02
71	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.41E-02
72	GO:0005525: GTP binding	2.43E-02
73	GO:0046872: metal ion binding	2.87E-02
74	GO:0031625: ubiquitin protein ligase binding	3.83E-02
75	GO:0022857: transmembrane transporter activity	4.39E-02
76	GO:0051082: unfolded protein binding	4.58E-02
77	GO:0015035: protein disulfide oxidoreductase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	1.86E-09
3	GO:0005839: proteasome core complex	4.69E-07
4	GO:0008541: proteasome regulatory particle, lid subcomplex	2.24E-04
5	GO:0030130: clathrin coat of trans-Golgi network vesicle	4.99E-04
6	GO:0030132: clathrin coat of coated pit	4.99E-04
7	GO:0005794: Golgi apparatus	6.85E-04
8	GO:0005783: endoplasmic reticulum	9.85E-04
9	GO:0005945: 6-phosphofructokinase complex	1.20E-03
10	GO:0000813: ESCRT I complex	1.20E-03
11	GO:0032580: Golgi cisterna membrane	1.33E-03
12	GO:0030904: retromer complex	1.47E-03
13	GO:0005788: endoplasmic reticulum lumen	1.67E-03
14	GO:0031597: cytosolic proteasome complex	1.76E-03
15	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.06E-03
16	GO:0031595: nuclear proteasome complex	2.06E-03
17	GO:0005811: lipid particle	2.73E-03
18	GO:0000326: protein storage vacuole	2.73E-03
19	GO:0019773: proteasome core complex, alpha-subunit complex	2.73E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	3.46E-03
21	GO:0005773: vacuole	4.53E-03
22	GO:0005774: vacuolar membrane	5.77E-03
23	GO:0005829: cytosol	5.86E-03
24	GO:0005737: cytoplasm	6.63E-03
25	GO:0009524: phragmoplast	8.38E-03
26	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.49E-03
27	GO:0009536: plastid	1.13E-02
28	GO:0031965: nuclear membrane	1.24E-02
29	GO:0016592: mediator complex	1.36E-02
30	GO:0005886: plasma membrane	2.02E-02
31	GO:0005819: spindle	2.56E-02
32	GO:0031902: late endosome membrane	2.72E-02
33	GO:0005635: nuclear envelope	3.74E-02