co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0042352: GDP-L-fucose salvage	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0009734: auxin-activated signaling pathway	5.01E-06
11	GO:0009733: response to auxin	3.77E-05
12	GO:0046620: regulation of organ growth	7.16E-05
13	GO:0048497: maintenance of floral organ identity	3.94E-04
14	GO:0040008: regulation of growth	7.26E-04
15	GO:0015904: tetracycline transport	7.44E-04
16	GO:0006434: seryl-tRNA aminoacylation	7.44E-04
17	GO:0042659: regulation of cell fate specification	7.44E-04
18	GO:0000025: maltose catabolic process	7.44E-04
19	GO:0030198: extracellular matrix organization	7.44E-04
20	GO:0006438: valyl-tRNA aminoacylation	7.44E-04
21	GO:0090558: plant epidermis development	7.44E-04
22	GO:0046520: sphingoid biosynthetic process	7.44E-04
23	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	7.44E-04
24	GO:0010480: microsporocyte differentiation	7.44E-04
25	GO:0035987: endodermal cell differentiation	7.44E-04
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.09E-04
27	GO:0010098: suspensor development	9.22E-04
28	GO:0006568: tryptophan metabolic process	1.61E-03
29	GO:2000123: positive regulation of stomatal complex development	1.61E-03
30	GO:0043039: tRNA aminoacylation	1.61E-03
31	GO:0006741: NADP biosynthetic process	1.61E-03
32	GO:0018026: peptidyl-lysine monomethylation	1.61E-03
33	GO:0071497: cellular response to freezing	1.61E-03
34	GO:0080009: mRNA methylation	1.61E-03
35	GO:0009786: regulation of asymmetric cell division	1.61E-03
36	GO:0031648: protein destabilization	1.61E-03
37	GO:0071554: cell wall organization or biogenesis	2.18E-03
38	GO:0048829: root cap development	2.32E-03
39	GO:0019674: NAD metabolic process	2.65E-03
40	GO:0090506: axillary shoot meristem initiation	2.65E-03
41	GO:0033591: response to L-ascorbic acid	2.65E-03
42	GO:0090708: specification of plant organ axis polarity	2.65E-03
43	GO:1902448: positive regulation of shade avoidance	2.65E-03
44	GO:0071398: cellular response to fatty acid	2.65E-03
45	GO:0006351: transcription, DNA-templated	3.28E-03
46	GO:0010588: cotyledon vascular tissue pattern formation	3.52E-03
47	GO:2000012: regulation of auxin polar transport	3.52E-03
48	GO:0010102: lateral root morphogenesis	3.52E-03
49	GO:0010628: positive regulation of gene expression	3.52E-03
50	GO:0019363: pyridine nucleotide biosynthetic process	3.86E-03
51	GO:0010371: regulation of gibberellin biosynthetic process	3.86E-03
52	GO:0051513: regulation of monopolar cell growth	3.86E-03
53	GO:0043207: response to external biotic stimulus	3.86E-03
54	GO:0007276: gamete generation	3.86E-03
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.86E-03
56	GO:0010321: regulation of vegetative phase change	3.86E-03
57	GO:0010020: chloroplast fission	3.97E-03
58	GO:1901141: regulation of lignin biosynthetic process	5.22E-03
59	GO:0042274: ribosomal small subunit biogenesis	5.22E-03
60	GO:0030104: water homeostasis	5.22E-03
61	GO:2000038: regulation of stomatal complex development	5.22E-03
62	GO:0042991: transcription factor import into nucleus	5.22E-03
63	GO:0042938: dipeptide transport	5.22E-03
64	GO:0009755: hormone-mediated signaling pathway	5.22E-03
65	GO:0016042: lipid catabolic process	5.98E-03
66	GO:0006865: amino acid transport	6.31E-03
67	GO:0010438: cellular response to sulfur starvation	6.71E-03
68	GO:0010375: stomatal complex patterning	6.71E-03
69	GO:0016131: brassinosteroid metabolic process	6.71E-03
70	GO:0045487: gibberellin catabolic process	6.71E-03
71	GO:0009686: gibberellin biosynthetic process	8.07E-03
72	GO:0010405: arabinogalactan protein metabolic process	8.35E-03
73	GO:0009959: negative gravitropism	8.35E-03
74	GO:0010358: leaf shaping	8.35E-03
75	GO:0016554: cytidine to uridine editing	8.35E-03
76	GO:0009913: epidermal cell differentiation	8.35E-03
77	GO:0060918: auxin transport	8.35E-03
78	GO:1902456: regulation of stomatal opening	8.35E-03
79	GO:0042793: transcription from plastid promoter	8.35E-03
80	GO:0003006: developmental process involved in reproduction	8.35E-03
81	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.35E-03
82	GO:0009793: embryo development ending in seed dormancy	8.74E-03
83	GO:0009926: auxin polar transport	9.26E-03
84	GO:0006355: regulation of transcription, DNA-templated	9.45E-03
85	GO:2000067: regulation of root morphogenesis	1.01E-02
86	GO:2000033: regulation of seed dormancy process	1.01E-02
87	GO:0031930: mitochondria-nucleus signaling pathway	1.01E-02
88	GO:0030488: tRNA methylation	1.01E-02
89	GO:0010182: sugar mediated signaling pathway	1.11E-02
90	GO:0010161: red light signaling pathway	1.20E-02
91	GO:1900056: negative regulation of leaf senescence	1.20E-02
92	GO:0030497: fatty acid elongation	1.20E-02
93	GO:0048437: floral organ development	1.20E-02
94	GO:0030307: positive regulation of cell growth	1.20E-02
95	GO:0048825: cotyledon development	1.29E-02
96	GO:0009736: cytokinin-activated signaling pathway	1.36E-02
97	GO:0016132: brassinosteroid biosynthetic process	1.38E-02
98	GO:0000105: histidine biosynthetic process	1.40E-02
99	GO:0006402: mRNA catabolic process	1.40E-02
100	GO:0009819: drought recovery	1.40E-02
101	GO:0010439: regulation of glucosinolate biosynthetic process	1.40E-02
102	GO:0009690: cytokinin metabolic process	1.40E-02
103	GO:0009704: de-etiolation	1.40E-02
104	GO:2000070: regulation of response to water deprivation	1.40E-02
105	GO:0010492: maintenance of shoot apical meristem identity	1.40E-02
106	GO:0055075: potassium ion homeostasis	1.40E-02
107	GO:0032502: developmental process	1.48E-02
108	GO:0010583: response to cyclopentenone	1.48E-02
109	GO:1901657: glycosyl compound metabolic process	1.57E-02
110	GO:0010099: regulation of photomorphogenesis	1.61E-02
111	GO:0010497: plasmodesmata-mediated intercellular transport	1.61E-02
112	GO:0010100: negative regulation of photomorphogenesis	1.61E-02
113	GO:0051865: protein autoubiquitination	1.83E-02
114	GO:0048507: meristem development	1.83E-02
115	GO:0006783: heme biosynthetic process	1.83E-02
116	GO:0000373: Group II intron splicing	1.83E-02
117	GO:0009056: catabolic process	1.83E-02
118	GO:0009416: response to light stimulus	1.93E-02
119	GO:0010027: thylakoid membrane organization	2.01E-02
120	GO:0009638: phototropism	2.06E-02
121	GO:0009098: leucine biosynthetic process	2.06E-02
122	GO:1900865: chloroplast RNA modification	2.06E-02
123	GO:2000280: regulation of root development	2.06E-02
124	GO:0031425: chloroplast RNA processing	2.06E-02
125	GO:0006468: protein phosphorylation	2.12E-02
126	GO:0009658: chloroplast organization	2.28E-02
127	GO:0009641: shade avoidance	2.30E-02
128	GO:0016441: posttranscriptional gene silencing	2.30E-02
129	GO:0006949: syncytium formation	2.30E-02
130	GO:0010162: seed dormancy process	2.30E-02
131	GO:0009299: mRNA transcription	2.30E-02
132	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.30E-02
133	GO:0048573: photoperiodism, flowering	2.37E-02
134	GO:0009773: photosynthetic electron transport in photosystem I	2.55E-02
135	GO:0009682: induced systemic resistance	2.55E-02
136	GO:0009073: aromatic amino acid family biosynthetic process	2.55E-02
137	GO:0009750: response to fructose	2.55E-02
138	GO:0048229: gametophyte development	2.55E-02
139	GO:0000160: phosphorelay signal transduction system	2.76E-02
140	GO:0012501: programmed cell death	2.81E-02
141	GO:0005983: starch catabolic process	2.81E-02
142	GO:0015706: nitrate transport	2.81E-02
143	GO:0010582: floral meristem determinacy	2.81E-02
144	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.81E-02
145	GO:0071555: cell wall organization	3.08E-02
146	GO:0010075: regulation of meristem growth	3.08E-02
147	GO:0009725: response to hormone	3.08E-02
148	GO:0009767: photosynthetic electron transport chain	3.08E-02
149	GO:0009785: blue light signaling pathway	3.08E-02
150	GO:0009691: cytokinin biosynthetic process	3.08E-02
151	GO:0006006: glucose metabolic process	3.08E-02
152	GO:2000028: regulation of photoperiodism, flowering	3.08E-02
153	GO:0009867: jasmonic acid mediated signaling pathway	3.32E-02
154	GO:0009887: animal organ morphogenesis	3.36E-02
155	GO:0009266: response to temperature stimulus	3.36E-02
156	GO:0009934: regulation of meristem structural organization	3.36E-02
157	GO:0006302: double-strand break repair	3.36E-02
158	GO:0048467: gynoecium development	3.36E-02
159	GO:0010223: secondary shoot formation	3.36E-02
160	GO:0009790: embryo development	3.43E-02
161	GO:0090351: seedling development	3.64E-02
162	GO:0006071: glycerol metabolic process	3.94E-02
163	GO:0006833: water transport	3.94E-02
164	GO:0000162: tryptophan biosynthetic process	3.94E-02
165	GO:0006863: purine nucleobase transport	3.94E-02
166	GO:0005992: trehalose biosynthetic process	4.24E-02
167	GO:0010187: negative regulation of seed germination	4.24E-02
168	GO:0051017: actin filament bundle assembly	4.24E-02
169	GO:0009451: RNA modification	4.33E-02
170	GO:0042546: cell wall biogenesis	4.45E-02
171	GO:0051302: regulation of cell division	4.54E-02
172	GO:0019953: sexual reproduction	4.54E-02
173	GO:0006418: tRNA aminoacylation for protein translation	4.54E-02
174	GO:0048511: rhythmic process	4.86E-02
175	GO:0010431: seed maturation	4.86E-02
176	GO:0006306: DNA methylation	4.86E-02
177	GO:0048278: vesicle docking	4.86E-02
178	GO:0051321: meiotic cell cycle	4.86E-02
179	GO:0016114: terpenoid biosynthetic process	4.86E-02
180	GO:0003333: amino acid transmembrane transport	4.86E-02
181	GO:0006470: protein dephosphorylation	4.96E-02
182	GO:0007166: cell surface receptor signaling pathway	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0015267: channel activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0050201: fucokinase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
9	GO:0047661: amino-acid racemase activity	0.00E+00
10	GO:0010012: steroid 22-alpha hydroxylase activity	7.44E-04
11	GO:0000170: sphingosine hydroxylase activity	7.44E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	7.44E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.44E-04
14	GO:0005227: calcium activated cation channel activity	7.44E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.44E-04
16	GO:0004828: serine-tRNA ligase activity	7.44E-04
17	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.44E-04
18	GO:0004134: 4-alpha-glucanotransferase activity	7.44E-04
19	GO:0009374: biotin binding	7.44E-04
20	GO:0052381: tRNA dimethylallyltransferase activity	7.44E-04
21	GO:0010313: phytochrome binding	7.44E-04
22	GO:0004832: valine-tRNA ligase activity	7.44E-04
23	GO:0042736: NADH kinase activity	7.44E-04
24	GO:0003852: 2-isopropylmalate synthase activity	1.61E-03
25	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.61E-03
26	GO:0043425: bHLH transcription factor binding	1.61E-03
27	GO:0010296: prenylcysteine methylesterase activity	1.61E-03
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.61E-03
29	GO:0042284: sphingolipid delta-4 desaturase activity	1.61E-03
30	GO:0008493: tetracycline transporter activity	1.61E-03
31	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.61E-03
32	GO:0016788: hydrolase activity, acting on ester bonds	1.97E-03
33	GO:0043621: protein self-association	2.12E-03
34	GO:0016413: O-acetyltransferase activity	3.25E-03
35	GO:0052689: carboxylic ester hydrolase activity	3.57E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	3.86E-03
37	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.86E-03
38	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.55E-03
39	GO:0004722: protein serine/threonine phosphatase activity	5.02E-03
40	GO:0042936: dipeptide transporter activity	5.22E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.22E-03
42	GO:0019199: transmembrane receptor protein kinase activity	5.22E-03
43	GO:0046556: alpha-L-arabinofuranosidase activity	5.22E-03
44	GO:0004335: galactokinase activity	5.22E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	5.22E-03
46	GO:0005528: FK506 binding	5.53E-03
47	GO:0005345: purine nucleobase transmembrane transporter activity	6.12E-03
48	GO:0003989: acetyl-CoA carboxylase activity	6.71E-03
49	GO:0004523: RNA-DNA hybrid ribonuclease activity	6.71E-03
50	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.71E-03
51	GO:0008408: 3'-5' exonuclease activity	6.73E-03
52	GO:0004176: ATP-dependent peptidase activity	6.73E-03
53	GO:0033612: receptor serine/threonine kinase binding	6.73E-03
54	GO:0080030: methyl indole-3-acetate esterase activity	8.35E-03
55	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.35E-03
56	GO:0004709: MAP kinase kinase kinase activity	8.35E-03
57	GO:0003727: single-stranded RNA binding	8.78E-03
58	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.01E-02
59	GO:0016832: aldehyde-lyase activity	1.01E-02
60	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.01E-02
61	GO:0003723: RNA binding	1.18E-02
62	GO:0016298: lipase activity	1.42E-02
63	GO:0004871: signal transducer activity	1.46E-02
64	GO:0004518: nuclease activity	1.48E-02
65	GO:0015171: amino acid transmembrane transporter activity	1.55E-02
66	GO:0000156: phosphorelay response regulator activity	1.57E-02
67	GO:0051015: actin filament binding	1.57E-02
68	GO:0003724: RNA helicase activity	1.61E-02
69	GO:0003951: NAD+ kinase activity	1.61E-02
70	GO:0008173: RNA methyltransferase activity	1.61E-02
71	GO:0016759: cellulose synthase activity	1.68E-02
72	GO:0008237: metallopeptidase activity	1.78E-02
73	GO:0005200: structural constituent of cytoskeleton	1.78E-02
74	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.83E-02
75	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.83E-02
76	GO:0004674: protein serine/threonine kinase activity	1.85E-02
77	GO:0004519: endonuclease activity	2.22E-02
78	GO:0004805: trehalose-phosphatase activity	2.30E-02
79	GO:0102483: scopolin beta-glucosidase activity	2.37E-02
80	GO:0004222: metalloendopeptidase activity	2.89E-02
81	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.03E-02
82	GO:0003725: double-stranded RNA binding	3.08E-02
83	GO:0003697: single-stranded DNA binding	3.32E-02
84	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.32E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.36E-02
86	GO:0008422: beta-glucosidase activity	3.63E-02
87	GO:0004190: aspartic-type endopeptidase activity	3.64E-02
88	GO:0003712: transcription cofactor activity	3.64E-02
89	GO:0008146: sulfotransferase activity	3.64E-02
90	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.86E-02
91	GO:0031418: L-ascorbic acid binding	4.24E-02
92	GO:0051087: chaperone binding	4.54E-02
93	GO:0010333: terpene synthase activity	4.86E-02
94	GO:0004707: MAP kinase activity	4.86E-02
95	GO:0003964: RNA-directed DNA polymerase activity	4.86E-02
96	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0000791: euchromatin	7.44E-04
3	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.61E-03
4	GO:0031357: integral component of chloroplast inner membrane	1.61E-03
5	GO:0030870: Mre11 complex	1.61E-03
6	GO:0010494: cytoplasmic stress granule	1.67E-03
7	GO:0019897: extrinsic component of plasma membrane	2.65E-03
8	GO:0030139: endocytic vesicle	2.65E-03
9	GO:0009317: acetyl-CoA carboxylase complex	2.65E-03
10	GO:0032585: multivesicular body membrane	3.86E-03
11	GO:0009544: chloroplast ATP synthase complex	5.22E-03
12	GO:0009654: photosystem II oxygen evolving complex	6.12E-03
13	GO:0000795: synaptonemal complex	6.71E-03
14	GO:0015629: actin cytoskeleton	8.07E-03
15	GO:0009986: cell surface	1.20E-02
16	GO:0019898: extrinsic component of membrane	1.29E-02
17	GO:0048226: Casparian strip	1.40E-02
18	GO:0009501: amyloplast	1.40E-02
19	GO:0046658: anchored component of plasma membrane	1.81E-02
20	GO:0000418: DNA-directed RNA polymerase IV complex	2.30E-02
21	GO:0090404: pollen tube tip	2.55E-02
22	GO:0005884: actin filament	2.55E-02
23	GO:0009534: chloroplast thylakoid	2.75E-02
24	GO:0009543: chloroplast thylakoid lumen	2.83E-02
25	GO:0005578: proteinaceous extracellular matrix	3.08E-02
26	GO:0009508: plastid chromosome	3.08E-02
27	GO:0030095: chloroplast photosystem II	3.36E-02
28	GO:0005875: microtubule associated complex	3.94E-02
29	GO:0005856: cytoskeleton	4.80E-02
30	GO:0005886: plasma membrane	4.88E-02