co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0010207: photosystem II assembly	4.01E-07
4	GO:0071482: cellular response to light stimulus	1.24E-05
5	GO:0019544: arginine catabolic process to glutamate	3.25E-05
6	GO:0000481: maturation of 5S rRNA	3.25E-05
7	GO:0042371: vitamin K biosynthetic process	3.25E-05
8	GO:0071461: cellular response to redox state	3.25E-05
9	GO:0034337: RNA folding	3.25E-05
10	GO:0046467: membrane lipid biosynthetic process	3.25E-05
11	GO:0010541: acropetal auxin transport	8.18E-05
12	GO:0009629: response to gravity	8.18E-05
13	GO:0080005: photosystem stoichiometry adjustment	8.18E-05
14	GO:0010160: formation of animal organ boundary	1.42E-04
15	GO:2001141: regulation of RNA biosynthetic process	2.11E-04
16	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.11E-04
17	GO:0010731: protein glutathionylation	2.11E-04
18	GO:0015976: carbon utilization	2.85E-04
19	GO:0000278: mitotic cell cycle	3.65E-04
20	GO:0006465: signal peptide processing	3.65E-04
21	GO:0009853: photorespiration	4.41E-04
22	GO:0015979: photosynthesis	4.45E-04
23	GO:0042549: photosystem II stabilization	4.48E-04
24	GO:0060918: auxin transport	4.48E-04
25	GO:0009854: oxidative photosynthetic carbon pathway	5.36E-04
26	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	5.36E-04
27	GO:0009926: auxin polar transport	5.65E-04
28	GO:0009645: response to low light intensity stimulus	6.27E-04
29	GO:0032508: DNA duplex unwinding	7.22E-04
30	GO:0031540: regulation of anthocyanin biosynthetic process	7.22E-04
31	GO:0052543: callose deposition in cell wall	7.22E-04
32	GO:0016559: peroxisome fission	7.22E-04
33	GO:0007346: regulation of mitotic cell cycle	1.02E-03
34	GO:0006352: DNA-templated transcription, initiation	1.24E-03
35	GO:0008361: regulation of cell size	1.36E-03
36	GO:0009767: photosynthetic electron transport chain	1.47E-03
37	GO:0010540: basipetal auxin transport	1.60E-03
38	GO:0010143: cutin biosynthetic process	1.60E-03
39	GO:0010020: chloroplast fission	1.60E-03
40	GO:0042023: DNA endoreduplication	1.85E-03
41	GO:0010025: wax biosynthetic process	1.85E-03
42	GO:0009768: photosynthesis, light harvesting in photosystem I	2.12E-03
43	GO:0048443: stamen development	2.69E-03
44	GO:0042631: cellular response to water deprivation	3.00E-03
45	GO:0009958: positive gravitropism	3.15E-03
46	GO:0009639: response to red or far red light	4.14E-03
47	GO:0006869: lipid transport	4.40E-03
48	GO:0009627: systemic acquired resistance	5.04E-03
49	GO:0042128: nitrate assimilation	5.04E-03
50	GO:0015995: chlorophyll biosynthetic process	5.22E-03
51	GO:0018298: protein-chromophore linkage	5.60E-03
52	GO:0009813: flavonoid biosynthetic process	5.80E-03
53	GO:0010218: response to far red light	5.99E-03
54	GO:0048527: lateral root development	6.19E-03
55	GO:0009637: response to blue light	6.60E-03
56	GO:0034599: cellular response to oxidative stress	6.80E-03
57	GO:0009640: photomorphogenesis	7.87E-03
58	GO:0009644: response to high light intensity	8.31E-03
59	GO:0009636: response to toxic substance	8.53E-03
60	GO:0010224: response to UV-B	9.93E-03
61	GO:0051726: regulation of cell cycle	1.29E-02
62	GO:0006413: translational initiation	1.74E-02
63	GO:0007623: circadian rhythm	1.83E-02
64	GO:0009733: response to auxin	2.00E-02
65	GO:0009409: response to cold	2.41E-02
66	GO:0006810: transport	2.62E-02
67	GO:0016042: lipid catabolic process	3.76E-02
68	GO:0009737: response to abscisic acid	3.79E-02
69	GO:0048364: root development	3.96E-02
70	GO:0009753: response to jasmonic acid	4.04E-02
71	GO:0009734: auxin-activated signaling pathway	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
5	GO:0004328: formamidase activity	3.25E-05
6	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	8.18E-05
7	GO:0050734: hydroxycinnamoyltransferase activity	1.42E-04
8	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.11E-04
9	GO:0001872: (1->3)-beta-D-glucan binding	2.11E-04
10	GO:0016851: magnesium chelatase activity	2.11E-04
11	GO:0001053: plastid sigma factor activity	2.85E-04
12	GO:0008453: alanine-glyoxylate transaminase activity	2.85E-04
13	GO:0016987: sigma factor activity	2.85E-04
14	GO:0009011: starch synthase activity	2.85E-04
15	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.36E-04
16	GO:0004089: carbonate dehydratase activity	1.47E-03
17	GO:0004565: beta-galactosidase activity	1.47E-03
18	GO:0010329: auxin efflux transmembrane transporter activity	1.47E-03
19	GO:0008266: poly(U) RNA binding	1.60E-03
20	GO:0031409: pigment binding	1.85E-03
21	GO:0043130: ubiquitin binding	1.99E-03
22	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.24E-03
23	GO:0042802: identical protein binding	2.24E-03
24	GO:0019901: protein kinase binding	3.47E-03
25	GO:0016168: chlorophyll binding	4.85E-03
26	GO:0030247: polysaccharide binding	5.22E-03
27	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.99E-03
28	GO:0008289: lipid binding	6.86E-03
29	GO:0042393: histone binding	7.22E-03
30	GO:0016887: ATPase activity	7.64E-03
31	GO:0004364: glutathione transferase activity	7.65E-03
32	GO:0016787: hydrolase activity	7.93E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	8.31E-03
34	GO:0051287: NAD binding	8.99E-03
35	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.69E-03
36	GO:0016740: transferase activity	1.07E-02
37	GO:0030170: pyridoxal phosphate binding	1.57E-02
38	GO:0008017: microtubule binding	1.89E-02
39	GO:0016788: hydrolase activity, acting on ester bonds	2.53E-02
40	GO:0008233: peptidase activity	2.87E-02
41	GO:0052689: carboxylic ester hydrolase activity	3.12E-02
42	GO:0042803: protein homodimerization activity	3.42E-02
43	GO:0003924: GTPase activity	3.84E-02
44	GO:0009055: electron carrier activity	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.12E-11
2	GO:0005787: signal peptidase complex	3.25E-05
3	GO:0009344: nitrite reductase complex [NAD(P)H]	3.25E-05
4	GO:0009782: photosystem I antenna complex	3.25E-05
5	GO:0009535: chloroplast thylakoid membrane	4.15E-05
6	GO:0009543: chloroplast thylakoid lumen	9.86E-05
7	GO:0010007: magnesium chelatase complex	1.42E-04
8	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	8.20E-04
9	GO:0009941: chloroplast envelope	1.16E-03
10	GO:0032040: small-subunit processome	1.36E-03
11	GO:0005777: peroxisome	1.48E-03
12	GO:0030095: chloroplast photosystem II	1.60E-03
13	GO:0030076: light-harvesting complex	1.72E-03
14	GO:0009570: chloroplast stroma	2.07E-03
15	GO:0009654: photosystem II oxygen evolving complex	2.12E-03
16	GO:0046658: anchored component of plasma membrane	2.33E-03
17	GO:0009522: photosystem I	3.31E-03
18	GO:0009523: photosystem II	3.47E-03
19	GO:0019898: extrinsic component of membrane	3.47E-03
20	GO:0019005: SCF ubiquitin ligase complex	5.60E-03
21	GO:0009707: chloroplast outer membrane	5.60E-03
22	GO:0031977: thylakoid lumen	7.43E-03
23	GO:0009534: chloroplast thylakoid	1.06E-02
24	GO:0031225: anchored component of membrane	1.37E-02
25	GO:0010287: plastoglobule	1.40E-02
26	GO:0048046: apoplast	1.55E-02
27	GO:0009705: plant-type vacuole membrane	1.83E-02
28	GO:0009505: plant-type cell wall	2.23E-02
29	GO:0005773: vacuole	2.50E-02