co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	2.65E-14
8	GO:0006094: gluconeogenesis	2.06E-09
9	GO:0015995: chlorophyll biosynthetic process	1.12E-08
10	GO:0015979: photosynthesis	1.60E-07
11	GO:0010207: photosystem II assembly	2.83E-07
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.35E-06
13	GO:0010206: photosystem II repair	3.78E-06
14	GO:0006000: fructose metabolic process	5.01E-06
15	GO:0090391: granum assembly	5.01E-06
16	GO:0005983: starch catabolic process	1.14E-05
17	GO:0055114: oxidation-reduction process	1.50E-05
18	GO:0006636: unsaturated fatty acid biosynthetic process	2.57E-05
19	GO:0042549: photosystem II stabilization	5.21E-05
20	GO:0006096: glycolytic process	1.19E-04
21	GO:0006810: transport	1.37E-04
22	GO:0006002: fructose 6-phosphate metabolic process	1.56E-04
23	GO:0006835: dicarboxylic acid transport	1.67E-04
24	GO:0000023: maltose metabolic process	1.67E-04
25	GO:0000025: maltose catabolic process	1.67E-04
26	GO:0071277: cellular response to calcium ion	1.67E-04
27	GO:0015671: oxygen transport	1.67E-04
28	GO:0080093: regulation of photorespiration	1.67E-04
29	GO:0031998: regulation of fatty acid beta-oxidation	1.67E-04
30	GO:0006098: pentose-phosphate shunt	1.91E-04
31	GO:0005976: polysaccharide metabolic process	3.78E-04
32	GO:0010353: response to trehalose	3.78E-04
33	GO:0005986: sucrose biosynthetic process	4.10E-04
34	GO:0010143: cutin biosynthetic process	4.63E-04
35	GO:0019253: reductive pentose-phosphate cycle	4.63E-04
36	GO:0010114: response to red light	5.67E-04
37	GO:0006518: peptide metabolic process	6.19E-04
38	GO:0006081: cellular aldehyde metabolic process	6.19E-04
39	GO:0061077: chaperone-mediated protein folding	7.70E-04
40	GO:0071484: cellular response to light intensity	8.83E-04
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.83E-04
42	GO:0009735: response to cytokinin	9.20E-04
43	GO:0080167: response to karrikin	1.09E-03
44	GO:0045727: positive regulation of translation	1.17E-03
45	GO:0015994: chlorophyll metabolic process	1.17E-03
46	GO:0006097: glyoxylate cycle	1.48E-03
47	GO:1902456: regulation of stomatal opening	1.83E-03
48	GO:0010190: cytochrome b6f complex assembly	1.83E-03
49	GO:0010189: vitamin E biosynthetic process	2.19E-03
50	GO:0009854: oxidative photosynthetic carbon pathway	2.19E-03
51	GO:0006633: fatty acid biosynthetic process	2.25E-03
52	GO:0009772: photosynthetic electron transport in photosystem II	2.58E-03
53	GO:0010196: nonphotochemical quenching	2.58E-03
54	GO:1900057: positive regulation of leaf senescence	2.58E-03
55	GO:0009610: response to symbiotic fungus	2.58E-03
56	GO:0016311: dephosphorylation	2.70E-03
57	GO:0019827: stem cell population maintenance	2.99E-03
58	GO:0009642: response to light intensity	2.99E-03
59	GO:0030091: protein repair	2.99E-03
60	GO:0009704: de-etiolation	2.99E-03
61	GO:0009631: cold acclimation	3.27E-03
62	GO:0009657: plastid organization	3.41E-03
63	GO:0032544: plastid translation	3.41E-03
64	GO:0019432: triglyceride biosynthetic process	3.86E-03
65	GO:0090333: regulation of stomatal closure	3.86E-03
66	GO:0006783: heme biosynthetic process	3.86E-03
67	GO:0006754: ATP biosynthetic process	3.86E-03
68	GO:0006631: fatty acid metabolic process	4.26E-03
69	GO:0010205: photoinhibition	4.33E-03
70	GO:0006779: porphyrin-containing compound biosynthetic process	4.33E-03
71	GO:0009658: chloroplast organization	4.41E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	4.81E-03
73	GO:0009641: shade avoidance	4.81E-03
74	GO:0043085: positive regulation of catalytic activity	5.32E-03
75	GO:0000272: polysaccharide catabolic process	5.32E-03
76	GO:0009750: response to fructose	5.32E-03
77	GO:0018119: peptidyl-cysteine S-nitrosylation	5.32E-03
78	GO:0006364: rRNA processing	6.21E-03
79	GO:0006108: malate metabolic process	6.38E-03
80	GO:0006006: glucose metabolic process	6.38E-03
81	GO:0009725: response to hormone	6.38E-03
82	GO:0010223: secondary shoot formation	6.93E-03
83	GO:0009266: response to temperature stimulus	6.93E-03
84	GO:0005985: sucrose metabolic process	7.50E-03
85	GO:0010025: wax biosynthetic process	8.10E-03
86	GO:0006869: lipid transport	8.20E-03
87	GO:0032259: methylation	9.00E-03
88	GO:0009768: photosynthesis, light harvesting in photosystem I	9.33E-03
89	GO:0016998: cell wall macromolecule catabolic process	9.97E-03
90	GO:0030433: ubiquitin-dependent ERAD pathway	1.06E-02
91	GO:0070417: cellular response to cold	1.27E-02
92	GO:0042631: cellular response to water deprivation	1.34E-02
93	GO:0000413: protein peptidyl-prolyl isomerization	1.34E-02
94	GO:0006662: glycerol ether metabolic process	1.41E-02
95	GO:0015986: ATP synthesis coupled proton transport	1.49E-02
96	GO:0010193: response to ozone	1.64E-02
97	GO:0009630: gravitropism	1.72E-02
98	GO:0010027: thylakoid membrane organization	2.13E-02
99	GO:0009409: response to cold	2.15E-02
100	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.22E-02
101	GO:0042128: nitrate assimilation	2.30E-02
102	GO:0045893: positive regulation of transcription, DNA-templated	2.34E-02
103	GO:0010411: xyloglucan metabolic process	2.39E-02
104	GO:0005975: carbohydrate metabolic process	2.54E-02
105	GO:0018298: protein-chromophore linkage	2.57E-02
106	GO:0000160: phosphorelay signal transduction system	2.67E-02
107	GO:0010311: lateral root formation	2.67E-02
108	GO:0010218: response to far red light	2.76E-02
109	GO:0009853: photorespiration	3.05E-02
110	GO:0009637: response to blue light	3.05E-02
111	GO:0006099: tricarboxylic acid cycle	3.14E-02
112	GO:0034599: cellular response to oxidative stress	3.14E-02
113	GO:0006839: mitochondrial transport	3.34E-02
114	GO:0009744: response to sucrose	3.65E-02
115	GO:0000209: protein polyubiquitination	3.75E-02
116	GO:0042546: cell wall biogenesis	3.75E-02
117	GO:0016042: lipid catabolic process	4.21E-02
118	GO:0006629: lipid metabolic process	4.34E-02
119	GO:0009736: cytokinin-activated signaling pathway	4.51E-02
120	GO:0010224: response to UV-B	4.62E-02
121	GO:0006979: response to oxidative stress	4.77E-02
122	GO:0006417: regulation of translation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0046408: chlorophyll synthetase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0004332: fructose-bisphosphate aldolase activity	4.14E-07
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.35E-06
11	GO:0010297: heteropolysaccharide binding	1.35E-06
12	GO:0035671: enone reductase activity	1.67E-04
13	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.67E-04
14	GO:0050521: alpha-glucan, water dikinase activity	1.67E-04
15	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.67E-04
16	GO:0045485: omega-6 fatty acid desaturase activity	1.67E-04
17	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.67E-04
18	GO:0004134: 4-alpha-glucanotransferase activity	1.67E-04
19	GO:0005344: oxygen transporter activity	1.67E-04
20	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.29E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.78E-04
22	GO:0018708: thiol S-methyltransferase activity	3.78E-04
23	GO:0016630: protochlorophyllide reductase activity	3.78E-04
24	GO:0008883: glutamyl-tRNA reductase activity	3.78E-04
25	GO:0047746: chlorophyllase activity	3.78E-04
26	GO:0042389: omega-3 fatty acid desaturase activity	3.78E-04
27	GO:0004565: beta-galactosidase activity	4.10E-04
28	GO:0031072: heat shock protein binding	4.10E-04
29	GO:0016491: oxidoreductase activity	4.47E-04
30	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.19E-04
31	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.19E-04
32	GO:0050734: hydroxycinnamoyltransferase activity	6.19E-04
33	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	6.19E-04
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.19E-04
35	GO:0051537: 2 iron, 2 sulfur cluster binding	6.25E-04
36	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.83E-04
37	GO:0016851: magnesium chelatase activity	8.83E-04
38	GO:0017077: oxidative phosphorylation uncoupler activity	8.83E-04
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.17E-03
40	GO:0048038: quinone binding	1.52E-03
41	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.83E-03
42	GO:0016615: malate dehydrogenase activity	1.83E-03
43	GO:0008200: ion channel inhibitor activity	1.83E-03
44	GO:2001070: starch binding	1.83E-03
45	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.19E-03
46	GO:0102391: decanoate--CoA ligase activity	2.19E-03
47	GO:0030060: L-malate dehydrogenase activity	2.19E-03
48	GO:0004467: long-chain fatty acid-CoA ligase activity	2.58E-03
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.41E-03
50	GO:0050661: NADP binding	4.08E-03
51	GO:0008168: methyltransferase activity	4.20E-03
52	GO:0008047: enzyme activator activity	4.81E-03
53	GO:0030234: enzyme regulator activity	4.81E-03
54	GO:0044183: protein binding involved in protein folding	5.32E-03
55	GO:0047372: acylglycerol lipase activity	5.32E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.38E-03
57	GO:0031409: pigment binding	8.10E-03
58	GO:0005528: FK506 binding	8.70E-03
59	GO:0051082: unfolded protein binding	8.84E-03
60	GO:0003756: protein disulfide isomerase activity	1.20E-02
61	GO:0003727: single-stranded RNA binding	1.20E-02
62	GO:0047134: protein-disulfide reductase activity	1.27E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.41E-02
64	GO:0008289: lipid binding	1.45E-02
65	GO:0004791: thioredoxin-disulfide reductase activity	1.49E-02
66	GO:0016853: isomerase activity	1.49E-02
67	GO:0050662: coenzyme binding	1.49E-02
68	GO:0004872: receptor activity	1.56E-02
69	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.64E-02
70	GO:0000156: phosphorelay response regulator activity	1.80E-02
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.80E-02
72	GO:0042802: identical protein binding	1.95E-02
73	GO:0016168: chlorophyll binding	2.22E-02
74	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.39E-02
75	GO:0016788: hydrolase activity, acting on ester bonds	2.42E-02
76	GO:0004222: metalloendopeptidase activity	2.76E-02
77	GO:0003746: translation elongation factor activity	3.05E-02
78	GO:0003993: acid phosphatase activity	3.14E-02
79	GO:0052689: carboxylic ester hydrolase activity	3.26E-02
80	GO:0043621: protein self-association	3.86E-02
81	GO:0051287: NAD binding	4.18E-02
82	GO:0016787: hydrolase activity	4.20E-02
83	GO:0031625: ubiquitin protein ligase binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	5.89E-37
3	GO:0009534: chloroplast thylakoid	1.07E-33
4	GO:0009535: chloroplast thylakoid membrane	1.46E-31
5	GO:0009941: chloroplast envelope	1.53E-20
6	GO:0009579: thylakoid	1.73E-15
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.52E-13
8	GO:0031977: thylakoid lumen	1.50E-09
9	GO:0009543: chloroplast thylakoid lumen	1.82E-09
10	GO:0009570: chloroplast stroma	6.92E-08
11	GO:0031969: chloroplast membrane	1.61E-06
12	GO:0048046: apoplast	4.54E-06
13	GO:0009706: chloroplast inner membrane	1.64E-04
14	GO:0009515: granal stacked thylakoid	1.67E-04
15	GO:0010319: stromule	1.77E-04
16	GO:0010287: plastoglobule	2.20E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.78E-04
18	GO:0031357: integral component of chloroplast inner membrane	3.78E-04
19	GO:0030095: chloroplast photosystem II	4.63E-04
20	GO:0010007: magnesium chelatase complex	6.19E-04
21	GO:0042651: thylakoid membrane	7.02E-04
22	GO:0009544: chloroplast ATP synthase complex	1.17E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.83E-03
24	GO:0008180: COP9 signalosome	3.86E-03
25	GO:0030076: light-harvesting complex	7.50E-03
26	GO:0043234: protein complex	8.10E-03
27	GO:0009654: photosystem II oxygen evolving complex	9.33E-03
28	GO:0009522: photosystem I	1.49E-02
29	GO:0009523: photosystem II	1.56E-02
30	GO:0019898: extrinsic component of membrane	1.56E-02
31	GO:0019005: SCF ubiquitin ligase complex	2.57E-02
32	GO:0009707: chloroplast outer membrane	2.57E-02
33	GO:0000502: proteasome complex	4.51E-02
34	GO:0016020: membrane	4.80E-02