co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0005980: glycogen catabolic process	1.30E-04
5	GO:0030198: extracellular matrix organization	1.30E-04
6	GO:0046520: sphingoid biosynthetic process	1.30E-04
7	GO:0010480: microsporocyte differentiation	1.30E-04
8	GO:0015904: tetracycline transport	1.30E-04
9	GO:0000025: maltose catabolic process	1.30E-04
10	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.30E-04
11	GO:0006423: cysteinyl-tRNA aminoacylation	2.99E-04
12	GO:0071497: cellular response to freezing	2.99E-04
13	GO:1900033: negative regulation of trichome patterning	2.99E-04
14	GO:0006568: tryptophan metabolic process	2.99E-04
15	GO:0033591: response to L-ascorbic acid	4.92E-04
16	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.04E-04
17	GO:0010306: rhamnogalacturonan II biosynthetic process	7.04E-04
18	GO:0010321: regulation of vegetative phase change	7.04E-04
19	GO:1901141: regulation of lignin biosynthetic process	9.34E-04
20	GO:0048629: trichome patterning	9.34E-04
21	GO:0010583: response to cyclopentenone	1.15E-03
22	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.45E-03
23	GO:1902456: regulation of stomatal opening	1.45E-03
24	GO:0010405: arabinogalactan protein metabolic process	1.45E-03
25	GO:0009959: negative gravitropism	1.45E-03
26	GO:0042026: protein refolding	1.73E-03
27	GO:0009082: branched-chain amino acid biosynthetic process	1.73E-03
28	GO:0006458: 'de novo' protein folding	1.73E-03
29	GO:0009099: valine biosynthetic process	1.73E-03
30	GO:0030488: tRNA methylation	1.73E-03
31	GO:0010161: red light signaling pathway	2.04E-03
32	GO:0048437: floral organ development	2.04E-03
33	GO:0000160: phosphorelay signal transduction system	2.11E-03
34	GO:0046620: regulation of organ growth	2.36E-03
35	GO:0009690: cytokinin metabolic process	2.36E-03
36	GO:0009097: isoleucine biosynthetic process	2.69E-03
37	GO:0010100: negative regulation of photomorphogenesis	2.69E-03
38	GO:0010099: regulation of photomorphogenesis	2.69E-03
39	GO:0010206: photosystem II repair	3.04E-03
40	GO:0006783: heme biosynthetic process	3.04E-03
41	GO:0031425: chloroplast RNA processing	3.41E-03
42	GO:0043067: regulation of programmed cell death	3.41E-03
43	GO:0009098: leucine biosynthetic process	3.41E-03
44	GO:0006855: drug transmembrane transport	3.79E-03
45	GO:0006457: protein folding	4.06E-03
46	GO:0009073: aromatic amino acid family biosynthetic process	4.18E-03
47	GO:0048229: gametophyte development	4.18E-03
48	GO:0010015: root morphogenesis	4.18E-03
49	GO:0000038: very long-chain fatty acid metabolic process	4.18E-03
50	GO:0009773: photosynthetic electron transport in photosystem I	4.18E-03
51	GO:0009736: cytokinin-activated signaling pathway	4.38E-03
52	GO:0005983: starch catabolic process	4.58E-03
53	GO:0006857: oligopeptide transport	4.68E-03
54	GO:0010102: lateral root morphogenesis	5.00E-03
55	GO:0006006: glucose metabolic process	5.00E-03
56	GO:0010075: regulation of meristem growth	5.00E-03
57	GO:0009767: photosynthetic electron transport chain	5.00E-03
58	GO:0010588: cotyledon vascular tissue pattern formation	5.00E-03
59	GO:0009266: response to temperature stimulus	5.44E-03
60	GO:0009934: regulation of meristem structural organization	5.44E-03
61	GO:0010187: negative regulation of seed germination	6.81E-03
62	GO:0080147: root hair cell development	6.81E-03
63	GO:0019953: sexual reproduction	7.30E-03
64	GO:0048511: rhythmic process	7.79E-03
65	GO:0061077: chaperone-mediated protein folding	7.79E-03
66	GO:0048278: vesicle docking	7.79E-03
67	GO:0006730: one-carbon metabolic process	8.30E-03
68	GO:0031348: negative regulation of defense response	8.30E-03
69	GO:0009686: gibberellin biosynthetic process	8.82E-03
70	GO:0042335: cuticle development	1.04E-02
71	GO:0080022: primary root development	1.04E-02
72	GO:0010087: phloem or xylem histogenesis	1.04E-02
73	GO:0010118: stomatal movement	1.04E-02
74	GO:0048653: anther development	1.04E-02
75	GO:0010305: leaf vascular tissue pattern formation	1.10E-02
76	GO:0010197: polar nucleus fusion	1.10E-02
77	GO:0048868: pollen tube development	1.10E-02
78	GO:0009960: endosperm development	1.10E-02
79	GO:0061025: membrane fusion	1.16E-02
80	GO:0042752: regulation of circadian rhythm	1.16E-02
81	GO:0009409: response to cold	1.26E-02
82	GO:0009416: response to light stimulus	1.26E-02
83	GO:0032502: developmental process	1.34E-02
84	GO:1901657: glycosyl compound metabolic process	1.40E-02
85	GO:0010252: auxin homeostasis	1.46E-02
86	GO:0009828: plant-type cell wall loosening	1.46E-02
87	GO:0010029: regulation of seed germination	1.73E-02
88	GO:0009607: response to biotic stimulus	1.73E-02
89	GO:0006906: vesicle fusion	1.79E-02
90	GO:0009860: pollen tube growth	1.80E-02
91	GO:0015995: chlorophyll biosynthetic process	1.86E-02
92	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
93	GO:0009631: cold acclimation	2.22E-02
94	GO:0007165: signal transduction	2.41E-02
95	GO:0006887: exocytosis	2.68E-02
96	GO:0009640: photomorphogenesis	2.84E-02
97	GO:0031347: regulation of defense response	3.25E-02
98	GO:0009664: plant-type cell wall organization	3.34E-02
99	GO:0009909: regulation of flower development	3.77E-02
100	GO:0048367: shoot system development	4.04E-02
101	GO:0006508: proteolysis	4.24E-02
102	GO:0009734: auxin-activated signaling pathway	4.30E-02
103	GO:0009740: gibberellic acid mediated signaling pathway	4.32E-02
104	GO:0006396: RNA processing	4.60E-02
105	GO:0009735: response to cytokinin	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0010313: phytochrome binding	1.30E-04
4	GO:0004134: 4-alpha-glucanotransferase activity	1.30E-04
5	GO:0004645: phosphorylase activity	1.30E-04
6	GO:0000170: sphingosine hydroxylase activity	1.30E-04
7	GO:0050139: nicotinate-N-glucosyltransferase activity	1.30E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.30E-04
9	GO:0008184: glycogen phosphorylase activity	1.30E-04
10	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.30E-04
11	GO:0008493: tetracycline transporter activity	2.99E-04
12	GO:0004817: cysteine-tRNA ligase activity	2.99E-04
13	GO:0042284: sphingolipid delta-4 desaturase activity	2.99E-04
14	GO:0052656: L-isoleucine transaminase activity	7.04E-04
15	GO:0052654: L-leucine transaminase activity	7.04E-04
16	GO:0052655: L-valine transaminase activity	7.04E-04
17	GO:0004084: branched-chain-amino-acid transaminase activity	9.34E-04
18	GO:0046556: alpha-L-arabinofuranosidase activity	9.34E-04
19	GO:0000156: phosphorelay response regulator activity	1.23E-03
20	GO:0080030: methyl indole-3-acetate esterase activity	1.45E-03
21	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.45E-03
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.73E-03
23	GO:0015238: drug transmembrane transporter activity	2.11E-03
24	GO:0008173: RNA methyltransferase activity	2.69E-03
25	GO:0044183: protein binding involved in protein folding	4.18E-03
26	GO:0004089: carbonate dehydratase activity	5.00E-03
27	GO:0031072: heat shock protein binding	5.00E-03
28	GO:0016757: transferase activity, transferring glycosyl groups	5.34E-03
29	GO:0051082: unfolded protein binding	6.22E-03
30	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.34E-03
31	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.34E-03
32	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.34E-03
33	GO:0005528: FK506 binding	6.81E-03
34	GO:0033612: receptor serine/threonine kinase binding	7.79E-03
35	GO:0004252: serine-type endopeptidase activity	8.64E-03
36	GO:0005215: transporter activity	9.32E-03
37	GO:0003727: single-stranded RNA binding	9.35E-03
38	GO:0015297: antiporter activity	1.03E-02
39	GO:0001085: RNA polymerase II transcription factor binding	1.10E-02
40	GO:0016759: cellulose synthase activity	1.46E-02
41	GO:0016788: hydrolase activity, acting on ester bonds	1.70E-02
42	GO:0102483: scopolin beta-glucosidase activity	1.86E-02
43	GO:0008236: serine-type peptidase activity	1.93E-02
44	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.22E-02
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.22E-02
46	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.37E-02
47	GO:0008422: beta-glucosidase activity	2.52E-02
48	GO:0000149: SNARE binding	2.52E-02
49	GO:0042393: histone binding	2.60E-02
50	GO:0004871: signal transducer activity	2.60E-02
51	GO:0005484: SNAP receptor activity	2.84E-02
52	GO:0035091: phosphatidylinositol binding	3.00E-02
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.17E-02
54	GO:0016298: lipase activity	3.60E-02
55	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.23E-02
56	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.23E-02
57	GO:0004386: helicase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009544: chloroplast ATP synthase complex	9.34E-04
2	GO:0009501: amyloplast	2.36E-03
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.04E-03
4	GO:0005578: proteinaceous extracellular matrix	5.00E-03
5	GO:0009570: chloroplast stroma	6.82E-03
6	GO:0009654: photosystem II oxygen evolving complex	7.30E-03
7	GO:0009543: chloroplast thylakoid lumen	7.79E-03
8	GO:0005770: late endosome	1.10E-02
9	GO:0019898: extrinsic component of membrane	1.22E-02
10	GO:0009534: chloroplast thylakoid	1.60E-02
11	GO:0005667: transcription factor complex	1.79E-02
12	GO:0009507: chloroplast	2.41E-02
13	GO:0031902: late endosome membrane	2.68E-02
14	GO:0031977: thylakoid lumen	2.68E-02
15	GO:0031201: SNARE complex	2.68E-02
16	GO:0090406: pollen tube	2.84E-02
17	GO:0010008: endosome membrane	4.04E-02
18	GO:0005834: heterotrimeric G-protein complex	4.14E-02
19	GO:0012505: endomembrane system	4.41E-02