co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:0042820: vitamin B6 catabolic process	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
6	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
7	GO:0008298: intracellular mRNA localization	0.00E+00
8	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0043488: regulation of mRNA stability	0.00E+00
11	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
12	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
13	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
14	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
15	GO:0042821: pyridoxal biosynthetic process	0.00E+00
16	GO:1901259: chloroplast rRNA processing	1.38E-08
17	GO:0015979: photosynthesis	1.81E-05
18	GO:0009765: photosynthesis, light harvesting	4.46E-05
19	GO:0009658: chloroplast organization	5.90E-05
20	GO:0009772: photosynthetic electron transport in photosystem II	1.88E-04
21	GO:0042371: vitamin K biosynthetic process	2.55E-04
22	GO:0043686: co-translational protein modification	2.55E-04
23	GO:0043007: maintenance of rDNA	2.55E-04
24	GO:0010028: xanthophyll cycle	2.55E-04
25	GO:0005991: trehalose metabolic process	2.55E-04
26	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.55E-04
27	GO:0000476: maturation of 4.5S rRNA	2.55E-04
28	GO:0009443: pyridoxal 5'-phosphate salvage	2.55E-04
29	GO:0000967: rRNA 5'-end processing	2.55E-04
30	GO:0009657: plastid organization	2.94E-04
31	GO:0032544: plastid translation	2.94E-04
32	GO:0018026: peptidyl-lysine monomethylation	5.64E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	5.64E-04
34	GO:0034470: ncRNA processing	5.64E-04
35	GO:0006415: translational termination	5.68E-04
36	GO:0009773: photosynthetic electron transport in photosystem I	5.68E-04
37	GO:0019684: photosynthesis, light reaction	5.68E-04
38	GO:0018298: protein-chromophore linkage	6.53E-04
39	GO:0009767: photosynthetic electron transport chain	7.37E-04
40	GO:0006954: inflammatory response	9.15E-04
41	GO:0090391: granum assembly	9.15E-04
42	GO:0005977: glycogen metabolic process	9.15E-04
43	GO:0019853: L-ascorbic acid biosynthetic process	9.26E-04
44	GO:0010114: response to red light	1.20E-03
45	GO:0016556: mRNA modification	1.31E-03
46	GO:0043572: plastid fission	1.31E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.31E-03
48	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.31E-03
49	GO:0009152: purine ribonucleotide biosynthetic process	1.31E-03
50	GO:0010601: positive regulation of auxin biosynthetic process	1.31E-03
51	GO:0046653: tetrahydrofolate metabolic process	1.31E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.31E-03
53	GO:0006730: one-carbon metabolic process	1.50E-03
54	GO:0006546: glycine catabolic process	1.75E-03
55	GO:0006021: inositol biosynthetic process	1.75E-03
56	GO:0010021: amylopectin biosynthetic process	1.75E-03
57	GO:0022622: root system development	1.75E-03
58	GO:0032543: mitochondrial translation	2.23E-03
59	GO:0006564: L-serine biosynthetic process	2.23E-03
60	GO:0010236: plastoquinone biosynthetic process	2.23E-03
61	GO:0031365: N-terminal protein amino acid modification	2.23E-03
62	GO:0009958: positive gravitropism	2.24E-03
63	GO:0032973: amino acid export	2.75E-03
64	GO:0000741: karyogamy	2.75E-03
65	GO:0009228: thiamine biosynthetic process	2.75E-03
66	GO:0046855: inositol phosphate dephosphorylation	2.75E-03
67	GO:0050665: hydrogen peroxide biosynthetic process	2.75E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.75E-03
69	GO:0042372: phylloquinone biosynthetic process	3.30E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.30E-03
71	GO:0009854: oxidative photosynthetic carbon pathway	3.30E-03
72	GO:0010019: chloroplast-nucleus signaling pathway	3.30E-03
73	GO:0080086: stamen filament development	3.30E-03
74	GO:0009955: adaxial/abaxial pattern specification	3.30E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	3.89E-03
76	GO:0009645: response to low light intensity stimulus	3.89E-03
77	GO:0032880: regulation of protein localization	3.89E-03
78	GO:0043090: amino acid import	3.89E-03
79	GO:0048437: floral organ development	3.89E-03
80	GO:0010027: thylakoid membrane organization	3.97E-03
81	GO:0055114: oxidation-reduction process	4.27E-03
82	GO:0046620: regulation of organ growth	4.52E-03
83	GO:0006353: DNA-templated transcription, termination	4.52E-03
84	GO:0070413: trehalose metabolism in response to stress	4.52E-03
85	GO:0010078: maintenance of root meristem identity	4.52E-03
86	GO:0015995: chlorophyll biosynthetic process	4.68E-03
87	GO:0016042: lipid catabolic process	4.75E-03
88	GO:0010204: defense response signaling pathway, resistance gene-independent	5.18E-03
89	GO:0043562: cellular response to nitrogen levels	5.18E-03
90	GO:0017004: cytochrome complex assembly	5.18E-03
91	GO:0071482: cellular response to light stimulus	5.18E-03
92	GO:0080144: amino acid homeostasis	5.86E-03
93	GO:0046916: cellular transition metal ion homeostasis	5.86E-03
94	GO:0098656: anion transmembrane transport	5.86E-03
95	GO:0009821: alkaloid biosynthetic process	5.86E-03
96	GO:0048527: lateral root development	5.99E-03
97	GO:0031425: chloroplast RNA processing	6.58E-03
98	GO:0009638: phototropism	6.58E-03
99	GO:0045036: protein targeting to chloroplast	7.33E-03
100	GO:0006949: syncytium formation	7.33E-03
101	GO:0006896: Golgi to vacuole transport	7.33E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	8.11E-03
103	GO:0043085: positive regulation of catalytic activity	8.11E-03
104	GO:0006352: DNA-templated transcription, initiation	8.11E-03
105	GO:0009684: indoleacetic acid biosynthetic process	8.11E-03
106	GO:0016024: CDP-diacylglycerol biosynthetic process	8.92E-03
107	GO:0006790: sulfur compound metabolic process	8.92E-03
108	GO:0010628: positive regulation of gene expression	9.75E-03
109	GO:0010588: cotyledon vascular tissue pattern formation	9.75E-03
110	GO:2000012: regulation of auxin polar transport	9.75E-03
111	GO:0048467: gynoecium development	1.06E-02
112	GO:0010143: cutin biosynthetic process	1.06E-02
113	GO:0010020: chloroplast fission	1.06E-02
114	GO:0010030: positive regulation of seed germination	1.15E-02
115	GO:0046854: phosphatidylinositol phosphorylation	1.15E-02
116	GO:0080167: response to karrikin	1.26E-02
117	GO:0005992: trehalose biosynthetic process	1.34E-02
118	GO:0048367: shoot system development	1.40E-02
119	GO:0007017: microtubule-based process	1.43E-02
120	GO:0009768: photosynthesis, light harvesting in photosystem I	1.43E-02
121	GO:0006418: tRNA aminoacylation for protein translation	1.43E-02
122	GO:0016114: terpenoid biosynthetic process	1.53E-02
123	GO:0019915: lipid storage	1.53E-02
124	GO:0061077: chaperone-mediated protein folding	1.53E-02
125	GO:0009269: response to desiccation	1.53E-02
126	GO:0019748: secondary metabolic process	1.64E-02
127	GO:0009793: embryo development ending in seed dormancy	1.67E-02
128	GO:0055085: transmembrane transport	1.70E-02
129	GO:0009686: gibberellin biosynthetic process	1.74E-02
130	GO:0006012: galactose metabolic process	1.74E-02
131	GO:0009409: response to cold	1.81E-02
132	GO:0008284: positive regulation of cell proliferation	1.95E-02
133	GO:0016117: carotenoid biosynthetic process	1.95E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.95E-02
135	GO:0042147: retrograde transport, endosome to Golgi	1.95E-02
136	GO:0080022: primary root development	2.07E-02
137	GO:0010087: phloem or xylem histogenesis	2.07E-02
138	GO:0042631: cellular response to water deprivation	2.07E-02
139	GO:0006810: transport	2.08E-02
140	GO:0009058: biosynthetic process	2.16E-02
141	GO:0010197: polar nucleus fusion	2.18E-02
142	GO:0010182: sugar mediated signaling pathway	2.18E-02
143	GO:0006397: mRNA processing	2.18E-02
144	GO:0009741: response to brassinosteroid	2.18E-02
145	GO:0010268: brassinosteroid homeostasis	2.18E-02
146	GO:0005975: carbohydrate metabolic process	2.20E-02
147	GO:0015986: ATP synthesis coupled proton transport	2.29E-02
148	GO:0009646: response to absence of light	2.29E-02
149	GO:0009790: embryo development	2.39E-02
150	GO:0048825: cotyledon development	2.41E-02
151	GO:0019252: starch biosynthetic process	2.41E-02
152	GO:0009556: microsporogenesis	2.41E-02
153	GO:0009851: auxin biosynthetic process	2.41E-02
154	GO:0006623: protein targeting to vacuole	2.41E-02
155	GO:0006891: intra-Golgi vesicle-mediated transport	2.53E-02
156	GO:0016132: brassinosteroid biosynthetic process	2.53E-02
157	GO:0006413: translational initiation	2.64E-02
158	GO:0032502: developmental process	2.65E-02
159	GO:1901657: glycosyl compound metabolic process	2.78E-02
160	GO:0009828: plant-type cell wall loosening	2.90E-02
161	GO:0016125: sterol metabolic process	2.90E-02
162	GO:0009627: systemic acquired resistance	3.56E-02
163	GO:0006888: ER to Golgi vesicle-mediated transport	3.70E-02
164	GO:0016311: dephosphorylation	3.83E-02
165	GO:0009817: defense response to fungus, incompatible interaction	3.97E-02
166	GO:0009832: plant-type cell wall biogenesis	4.12E-02
167	GO:0009416: response to light stimulus	4.21E-02
168	GO:0010218: response to far red light	4.26E-02
169	GO:0010119: regulation of stomatal movement	4.41E-02
170	GO:0009637: response to blue light	4.70E-02
171	GO:0009853: photorespiration	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
3	GO:0004823: leucine-tRNA ligase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0019899: enzyme binding	3.47E-06
7	GO:0043495: protein anchor	4.46E-05
8	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.43E-04
9	GO:0004033: aldo-keto reductase (NADP) activity	2.38E-04
10	GO:0042586: peptide deformylase activity	2.55E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.55E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.55E-04
13	GO:0046906: tetrapyrrole binding	2.55E-04
14	GO:0051777: ent-kaurenoate oxidase activity	2.55E-04
15	GO:0004856: xylulokinase activity	2.55E-04
16	GO:0003747: translation release factor activity	3.55E-04
17	GO:0016168: chlorophyll binding	5.00E-04
18	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.64E-04
19	GO:0019156: isoamylase activity	5.64E-04
20	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.64E-04
21	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.64E-04
22	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.64E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	5.64E-04
24	GO:0004047: aminomethyltransferase activity	5.64E-04
25	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	5.64E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	5.64E-04
27	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.64E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	5.64E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	5.64E-04
30	GO:0004751: ribose-5-phosphate isomerase activity	9.15E-04
31	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.15E-04
32	GO:0070402: NADPH binding	9.15E-04
33	GO:0008864: formyltetrahydrofolate deformylase activity	9.15E-04
34	GO:0002161: aminoacyl-tRNA editing activity	9.15E-04
35	GO:0003993: acid phosphatase activity	9.27E-04
36	GO:0005528: FK506 binding	1.14E-03
37	GO:0016149: translation release factor activity, codon specific	1.31E-03
38	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.31E-03
39	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.31E-03
40	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.31E-03
41	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.31E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.63E-03
43	GO:0008891: glycolate oxidase activity	1.75E-03
44	GO:0004659: prenyltransferase activity	1.75E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	1.75E-03
46	GO:0001053: plastid sigma factor activity	1.75E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.75E-03
48	GO:0004045: aminoacyl-tRNA hydrolase activity	1.75E-03
49	GO:0016987: sigma factor activity	1.75E-03
50	GO:0016788: hydrolase activity, acting on ester bonds	2.03E-03
51	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.23E-03
52	GO:0016846: carbon-sulfur lyase activity	2.23E-03
53	GO:0003723: RNA binding	2.63E-03
54	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.75E-03
55	GO:0004556: alpha-amylase activity	2.75E-03
56	GO:0042578: phosphoric ester hydrolase activity	2.75E-03
57	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.75E-03
58	GO:0004629: phospholipase C activity	2.75E-03
59	GO:0052689: carboxylic ester hydrolase activity	3.20E-03
60	GO:0003730: mRNA 3'-UTR binding	3.30E-03
61	GO:0004435: phosphatidylinositol phospholipase C activity	3.30E-03
62	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.30E-03
63	GO:0008195: phosphatidate phosphatase activity	3.30E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.30E-03
65	GO:0016791: phosphatase activity	3.33E-03
66	GO:0019843: rRNA binding	3.65E-03
67	GO:0046914: transition metal ion binding	5.18E-03
68	GO:0016844: strictosidine synthase activity	6.58E-03
69	GO:0042802: identical protein binding	7.45E-03
70	GO:0005525: GTP binding	7.51E-03
71	GO:0008559: xenobiotic-transporting ATPase activity	8.11E-03
72	GO:0047372: acylglycerol lipase activity	8.11E-03
73	GO:0004185: serine-type carboxypeptidase activity	8.47E-03
74	GO:0008378: galactosyltransferase activity	8.92E-03
75	GO:0004022: alcohol dehydrogenase (NAD) activity	9.75E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	9.75E-03
77	GO:0004089: carbonate dehydratase activity	9.75E-03
78	GO:0003725: double-stranded RNA binding	9.75E-03
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.89E-03
80	GO:0008083: growth factor activity	1.06E-02
81	GO:0031409: pigment binding	1.24E-02
82	GO:0003824: catalytic activity	1.27E-02
83	GO:0004176: ATP-dependent peptidase activity	1.53E-02
84	GO:0030570: pectate lyase activity	1.74E-02
85	GO:0003727: single-stranded RNA binding	1.85E-02
86	GO:0008514: organic anion transmembrane transporter activity	1.85E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	1.95E-02
88	GO:0003924: GTPase activity	2.06E-02
89	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.18E-02
90	GO:0010181: FMN binding	2.29E-02
91	GO:0048038: quinone binding	2.53E-02
92	GO:0008237: metallopeptidase activity	3.03E-02
93	GO:0005200: structural constituent of cytoskeleton	3.03E-02
94	GO:0008483: transaminase activity	3.03E-02
95	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.03E-02
96	GO:0016597: amino acid binding	3.16E-02
97	GO:0003743: translation initiation factor activity	3.30E-02
98	GO:0102483: scopolin beta-glucosidase activity	3.70E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.97E-02
100	GO:0004222: metalloendopeptidase activity	4.26E-02
101	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	2.72E-25
3	GO:0009570: chloroplast stroma	2.36E-17
4	GO:0009535: chloroplast thylakoid membrane	3.41E-09
5	GO:0009579: thylakoid	9.41E-08
6	GO:0009534: chloroplast thylakoid	1.00E-06
7	GO:0009941: chloroplast envelope	2.79E-06
8	GO:0009543: chloroplast thylakoid lumen	7.49E-06
9	GO:0009654: photosystem II oxygen evolving complex	9.04E-05
10	GO:0009523: photosystem II	2.61E-04
11	GO:0030095: chloroplast photosystem II	8.30E-04
12	GO:0042651: thylakoid membrane	1.25E-03
13	GO:0042646: plastid nucleoid	1.31E-03
14	GO:0009517: PSII associated light-harvesting complex II	1.75E-03
15	GO:0009522: photosystem I	2.40E-03
16	GO:0019898: extrinsic component of membrane	2.57E-03
17	GO:0009706: chloroplast inner membrane	2.74E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.75E-03
19	GO:0031969: chloroplast membrane	2.75E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	3.30E-03
21	GO:0030529: intracellular ribonucleoprotein complex	3.97E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	4.52E-03
23	GO:0009539: photosystem II reaction center	5.18E-03
24	GO:0042644: chloroplast nucleoid	5.86E-03
25	GO:0045298: tubulin complex	5.86E-03
26	GO:0005763: mitochondrial small ribosomal subunit	5.86E-03
27	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.86E-03
28	GO:0005618: cell wall	7.22E-03
29	GO:0031977: thylakoid lumen	7.80E-03
30	GO:0030076: light-harvesting complex	1.15E-02
31	GO:0009532: plastid stroma	1.53E-02
32	GO:0009536: plastid	1.53E-02
33	GO:0009505: plant-type cell wall	1.59E-02
34	GO:0010287: plastoglobule	1.94E-02
35	GO:0016020: membrane	2.92E-02
36	GO:0010319: stromule	3.03E-02
37	GO:0005840: ribosome	3.62E-02
38	GO:0048046: apoplast	3.87E-02
39	GO:0009707: chloroplast outer membrane	3.97E-02
40	GO:0000325: plant-type vacuole	4.41E-02
41	GO:0005576: extracellular region	4.94E-02