Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G73885

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090279: regulation of calcium ion import0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
5GO:0015882: L-ascorbic acid transport0.00E+00
6GO:0008298: intracellular mRNA localization0.00E+00
7GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
8GO:0071474: cellular hyperosmotic response0.00E+00
9GO:1905421: regulation of plant organ morphogenesis0.00E+00
10GO:0030155: regulation of cell adhesion0.00E+00
11GO:0009715: chalcone biosynthetic process0.00E+00
12GO:1902326: positive regulation of chlorophyll biosynthetic process3.47E-06
13GO:0005977: glycogen metabolic process1.24E-05
14GO:0015979: photosynthesis2.50E-05
15GO:2001141: regulation of RNA biosynthetic process2.80E-05
16GO:0009767: photosynthetic electron transport chain4.47E-05
17GO:0010021: amylopectin biosynthetic process5.05E-05
18GO:0015976: carbon utilization5.05E-05
19GO:0018298: protein-chromophore linkage7.51E-05
20GO:0009904: chloroplast accumulation movement8.02E-05
21GO:0045038: protein import into chloroplast thylakoid membrane8.02E-05
22GO:0009903: chloroplast avoidance movement1.60E-04
23GO:0031426: polycistronic mRNA processing2.75E-04
24GO:0051775: response to redox state2.75E-04
25GO:0000481: maturation of 5S rRNA2.75E-04
26GO:0042371: vitamin K biosynthetic process2.75E-04
27GO:0071461: cellular response to redox state2.75E-04
28GO:0010028: xanthophyll cycle2.75E-04
29GO:0034337: RNA folding2.75E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.75E-04
31GO:0010362: negative regulation of anion channel activity by blue light2.75E-04
32GO:0009443: pyridoxal 5'-phosphate salvage2.75E-04
33GO:0015969: guanosine tetraphosphate metabolic process2.75E-04
34GO:0005975: carbohydrate metabolic process2.89E-04
35GO:0019252: starch biosynthetic process3.00E-04
36GO:0071482: cellular response to light stimulus3.27E-04
37GO:0010541: acropetal auxin transport6.04E-04
38GO:0010155: regulation of proton transport6.04E-04
39GO:0051262: protein tetramerization6.04E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly6.04E-04
41GO:0009629: response to gravity6.04E-04
42GO:0080005: photosystem stoichiometry adjustment6.04E-04
43GO:0043085: positive regulation of catalytic activity6.30E-04
44GO:0006352: DNA-templated transcription, initiation6.30E-04
45GO:0019684: photosynthesis, light reaction6.30E-04
46GO:0015995: chlorophyll biosynthetic process6.55E-04
47GO:0010160: formation of animal organ boundary9.79E-04
48GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.79E-04
49GO:0000913: preprophase band assembly9.79E-04
50GO:0048281: inflorescence morphogenesis9.79E-04
51GO:0031022: nuclear migration along microfilament9.79E-04
52GO:0006954: inflammatory response9.79E-04
53GO:0007017: microtubule-based process1.38E-03
54GO:0051016: barbed-end actin filament capping1.40E-03
55GO:0010731: protein glutathionylation1.40E-03
56GO:0010148: transpiration1.40E-03
57GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.40E-03
58GO:0006107: oxaloacetate metabolic process1.40E-03
59GO:0010239: chloroplast mRNA processing1.40E-03
60GO:0009226: nucleotide-sugar biosynthetic process1.40E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light1.40E-03
62GO:0006546: glycine catabolic process1.87E-03
63GO:0006021: inositol biosynthetic process1.87E-03
64GO:0006734: NADH metabolic process1.87E-03
65GO:0010037: response to carbon dioxide1.87E-03
66GO:0009765: photosynthesis, light harvesting1.87E-03
67GO:0006109: regulation of carbohydrate metabolic process1.87E-03
68GO:2000122: negative regulation of stomatal complex development1.87E-03
69GO:0031122: cytoplasmic microtubule organization1.87E-03
70GO:0043097: pyrimidine nucleoside salvage2.39E-03
71GO:0009107: lipoate biosynthetic process2.39E-03
72GO:0006465: signal peptide processing2.39E-03
73GO:0080110: sporopollenin biosynthetic process2.39E-03
74GO:0006662: glycerol ether metabolic process2.48E-03
75GO:0006810: transport2.79E-03
76GO:0010190: cytochrome b6f complex assembly2.95E-03
77GO:0006206: pyrimidine nucleobase metabolic process2.95E-03
78GO:0046855: inositol phosphate dephosphorylation2.95E-03
79GO:0050665: hydrogen peroxide biosynthetic process2.95E-03
80GO:0060918: auxin transport2.95E-03
81GO:0032502: developmental process3.26E-03
82GO:0010189: vitamin E biosynthetic process3.55E-03
83GO:0009854: oxidative photosynthetic carbon pathway3.55E-03
84GO:0010019: chloroplast-nucleus signaling pathway3.55E-03
85GO:0009645: response to low light intensity stimulus4.19E-03
86GO:0006400: tRNA modification4.19E-03
87GO:0010103: stomatal complex morphogenesis4.19E-03
88GO:0009395: phospholipid catabolic process4.19E-03
89GO:0051693: actin filament capping4.19E-03
90GO:0070370: cellular heat acclimation4.19E-03
91GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.19E-03
92GO:0042255: ribosome assembly4.86E-03
93GO:0009690: cytokinin metabolic process4.86E-03
94GO:0006605: protein targeting4.86E-03
95GO:0006353: DNA-templated transcription, termination4.86E-03
96GO:0032508: DNA duplex unwinding4.86E-03
97GO:0031540: regulation of anthocyanin biosynthetic process4.86E-03
98GO:0052543: callose deposition in cell wall4.86E-03
99GO:0016559: peroxisome fission4.86E-03
100GO:0007155: cell adhesion4.86E-03
101GO:0010204: defense response signaling pathway, resistance gene-independent5.57E-03
102GO:0032544: plastid translation5.57E-03
103GO:0017004: cytochrome complex assembly5.57E-03
104GO:0001558: regulation of cell growth5.57E-03
105GO:0055085: transmembrane transport5.76E-03
106GO:0048507: meristem development6.31E-03
107GO:0006754: ATP biosynthetic process6.31E-03
108GO:0098656: anion transmembrane transport6.31E-03
109GO:0009051: pentose-phosphate shunt, oxidative branch6.31E-03
110GO:0010206: photosystem II repair6.31E-03
111GO:0010119: regulation of stomatal movement6.66E-03
112GO:0009638: phototropism7.09E-03
113GO:0009409: response to cold7.27E-03
114GO:0009637: response to blue light7.30E-03
115GO:0034599: cellular response to oxidative stress7.63E-03
116GO:0019538: protein metabolic process7.90E-03
117GO:0043069: negative regulation of programmed cell death7.90E-03
118GO:0018119: peptidyl-cysteine S-nitrosylation8.74E-03
119GO:0009684: indoleacetic acid biosynthetic process8.74E-03
120GO:0009089: lysine biosynthetic process via diaminopimelate8.74E-03
121GO:0009926: auxin polar transport9.42E-03
122GO:0008361: regulation of cell size9.61E-03
123GO:0006790: sulfur compound metabolic process9.61E-03
124GO:0009644: response to high light intensity1.02E-02
125GO:0009785: blue light signaling pathway1.05E-02
126GO:0006108: malate metabolic process1.05E-02
127GO:0030036: actin cytoskeleton organization1.05E-02
128GO:0009658: chloroplast organization1.10E-02
129GO:0010020: chloroplast fission1.14E-02
130GO:0019253: reductive pentose-phosphate cycle1.14E-02
131GO:0007015: actin filament organization1.14E-02
132GO:0010540: basipetal auxin transport1.14E-02
133GO:0010207: photosystem II assembly1.14E-02
134GO:0019853: L-ascorbic acid biosynthetic process1.24E-02
135GO:0046854: phosphatidylinositol phosphorylation1.24E-02
136GO:0042343: indole glucosinolate metabolic process1.24E-02
137GO:0055114: oxidation-reduction process1.24E-02
138GO:0006636: unsaturated fatty acid biosynthetic process1.34E-02
139GO:0006833: water transport1.34E-02
140GO:0080167: response to karrikin1.44E-02
141GO:0009944: polarity specification of adaxial/abaxial axis1.44E-02
142GO:0009768: photosynthesis, light harvesting in photosystem I1.55E-02
143GO:0051302: regulation of cell division1.55E-02
144GO:0098542: defense response to other organism1.65E-02
145GO:0006730: one-carbon metabolic process1.76E-02
146GO:0019748: secondary metabolic process1.76E-02
147GO:0001944: vasculature development1.88E-02
148GO:0009306: protein secretion1.99E-02
149GO:0010584: pollen exine formation1.99E-02
150GO:0048443: stamen development1.99E-02
151GO:0008033: tRNA processing2.23E-02
152GO:0034220: ion transmembrane transport2.23E-02
153GO:0045489: pectin biosynthetic process2.35E-02
154GO:0009958: positive gravitropism2.35E-02
155GO:0006520: cellular amino acid metabolic process2.35E-02
156GO:0007018: microtubule-based movement2.47E-02
157GO:0008654: phospholipid biosynthetic process2.60E-02
158GO:0009791: post-embryonic development2.60E-02
159GO:0016032: viral process2.86E-02
160GO:0006633: fatty acid biosynthetic process2.86E-02
161GO:0006413: translational initiation2.93E-02
162GO:1901657: glycosyl compound metabolic process2.99E-02
163GO:0009639: response to red or far red light3.13E-02
164GO:0007623: circadian rhythm3.14E-02
165GO:0000910: cytokinesis3.41E-02
166GO:0010027: thylakoid membrane organization3.55E-02
167GO:0016126: sterol biosynthetic process3.55E-02
168GO:0008380: RNA splicing3.75E-02
169GO:0009627: systemic acquired resistance3.84E-02
170GO:0016311: dephosphorylation4.14E-02
171GO:0000160: phosphorelay signal transduction system4.44E-02
172GO:0009813: flavonoid biosynthetic process4.44E-02
173GO:0006811: ion transport4.59E-02
174GO:0010218: response to far red light4.59E-02
175GO:0009631: cold acclimation4.75E-02
176GO:0048527: lateral root development4.75E-02
RankGO TermAdjusted P value
1GO:0050613: delta14-sterol reductase activity0.00E+00
2GO:0010276: phytol kinase activity0.00E+00
3GO:0008974: phosphoribulokinase activity0.00E+00
4GO:0015229: L-ascorbic acid transporter activity0.00E+00
5GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
10GO:0016210: naringenin-chalcone synthase activity0.00E+00
11GO:0043864: indoleacetamide hydrolase activity0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
14GO:0019156: isoamylase activity3.47E-06
15GO:0019899: enzyme binding4.17E-06
16GO:0016491: oxidoreductase activity4.27E-05
17GO:0043495: protein anchor5.05E-05
18GO:0001053: plastid sigma factor activity5.05E-05
19GO:0016987: sigma factor activity5.05E-05
20GO:0004556: alpha-amylase activity1.17E-04
21GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.60E-04
22GO:0008746: NAD(P)+ transhydrogenase activity2.75E-04
23GO:0004328: formamidase activity2.75E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity2.75E-04
25GO:0046906: tetrapyrrole binding2.75E-04
26GO:0005227: calcium activated cation channel activity2.75E-04
27GO:0080132: fatty acid alpha-hydroxylase activity2.75E-04
28GO:0008568: microtubule-severing ATPase activity2.75E-04
29GO:0042802: identical protein binding3.32E-04
30GO:0016168: chlorophyll binding5.71E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.04E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity6.04E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.04E-04
34GO:0048531: beta-1,3-galactosyltransferase activity6.04E-04
35GO:0008728: GTP diphosphokinase activity6.04E-04
36GO:0004103: choline kinase activity6.04E-04
37GO:0080045: quercetin 3'-O-glucosyltransferase activity6.04E-04
38GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.04E-04
39GO:0004047: aminomethyltransferase activity6.04E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity6.04E-04
41GO:0004312: fatty acid synthase activity6.04E-04
42GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.04E-04
43GO:0004089: carbonate dehydratase activity8.15E-04
44GO:0070402: NADPH binding9.79E-04
45GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity9.79E-04
46GO:0016992: lipoate synthase activity9.79E-04
47GO:0003993: acid phosphatase activity1.06E-03
48GO:0003924: GTPase activity1.38E-03
49GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.40E-03
50GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.40E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.40E-03
52GO:0016851: magnesium chelatase activity1.40E-03
53GO:0009882: blue light photoreceptor activity1.40E-03
54GO:0017057: 6-phosphogluconolactonase activity1.40E-03
55GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.40E-03
56GO:0001872: (1->3)-beta-D-glucan binding1.40E-03
57GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.40E-03
58GO:0048027: mRNA 5'-UTR binding1.40E-03
59GO:0003824: catalytic activity1.47E-03
60GO:0022891: substrate-specific transmembrane transporter activity1.81E-03
61GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.87E-03
62GO:0019199: transmembrane receptor protein kinase activity1.87E-03
63GO:0042277: peptide binding1.87E-03
64GO:0008891: glycolate oxidase activity1.87E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity1.87E-03
66GO:0080032: methyl jasmonate esterase activity1.87E-03
67GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.87E-03
68GO:0009011: starch synthase activity1.87E-03
69GO:0047134: protein-disulfide reductase activity2.13E-03
70GO:0004040: amidase activity2.39E-03
71GO:0008374: O-acyltransferase activity2.39E-03
72GO:0010181: FMN binding2.67E-03
73GO:0005525: GTP binding2.67E-03
74GO:0004791: thioredoxin-disulfide reductase activity2.67E-03
75GO:0000293: ferric-chelate reductase activity2.95E-03
76GO:0004462: lactoylglutathione lyase activity2.95E-03
77GO:0016615: malate dehydrogenase activity2.95E-03
78GO:0008200: ion channel inhibitor activity2.95E-03
79GO:0080046: quercetin 4'-O-glucosyltransferase activity2.95E-03
80GO:0004605: phosphatidate cytidylyltransferase activity2.95E-03
81GO:0080030: methyl indole-3-acetate esterase activity2.95E-03
82GO:0016887: ATPase activity2.99E-03
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.48E-03
84GO:0030060: L-malate dehydrogenase activity3.55E-03
85GO:0005261: cation channel activity3.55E-03
86GO:0004849: uridine kinase activity3.55E-03
87GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.55E-03
88GO:0005200: structural constituent of cytoskeleton3.93E-03
89GO:0004033: aldo-keto reductase (NADP) activity4.86E-03
90GO:0008312: 7S RNA binding4.86E-03
91GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.31E-03
92GO:0008047: enzyme activator activity7.90E-03
93GO:0004185: serine-type carboxypeptidase activity9.42E-03
94GO:0004565: beta-galactosidase activity1.05E-02
95GO:0010329: auxin efflux transmembrane transporter activity1.05E-02
96GO:0008081: phosphoric diester hydrolase activity1.05E-02
97GO:0005315: inorganic phosphate transmembrane transporter activity1.05E-02
98GO:0031072: heat shock protein binding1.05E-02
99GO:0000155: phosphorelay sensor kinase activity1.05E-02
100GO:0016788: hydrolase activity, acting on ester bonds1.12E-02
101GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.27E-02
102GO:0031409: pigment binding1.34E-02
103GO:0004857: enzyme inhibitor activity1.44E-02
104GO:0005528: FK506 binding1.44E-02
105GO:0015035: protein disulfide oxidoreductase activity1.87E-02
106GO:0030570: pectate lyase activity1.88E-02
107GO:0003727: single-stranded RNA binding1.99E-02
108GO:0008514: organic anion transmembrane transporter activity1.99E-02
109GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.11E-02
110GO:0008080: N-acetyltransferase activity2.35E-02
111GO:0016829: lyase activity2.46E-02
112GO:0050662: coenzyme binding2.47E-02
113GO:0003729: mRNA binding2.55E-02
114GO:0048038: quinone binding2.73E-02
115GO:0008483: transaminase activity3.27E-02
116GO:0008017: microtubule binding3.29E-02
117GO:0005509: calcium ion binding3.52E-02
118GO:0015250: water channel activity3.55E-02
119GO:0030247: polysaccharide binding3.99E-02
120GO:0102483: scopolin beta-glucosidase activity3.99E-02
121GO:0008236: serine-type peptidase activity4.14E-02
122GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.29E-02
123GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.75E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast2.81E-24
4GO:0009535: chloroplast thylakoid membrane9.74E-11
5GO:0009570: chloroplast stroma9.72E-09
6GO:0009543: chloroplast thylakoid lumen3.29E-08
7GO:0009941: chloroplast envelope1.78E-07
8GO:0080085: signal recognition particle, chloroplast targeting3.47E-06
9GO:0009654: photosystem II oxygen evolving complex3.76E-06
10GO:0009579: thylakoid7.88E-05
11GO:0042651: thylakoid membrane1.06E-04
12GO:0031977: thylakoid lumen1.58E-04
13GO:0005787: signal peptidase complex2.75E-04
14GO:0009782: photosystem I antenna complex2.75E-04
15GO:0019898: extrinsic component of membrane3.00E-04
16GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.27E-04
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.94E-04
18GO:0008290: F-actin capping protein complex6.04E-04
19GO:0030095: chloroplast photosystem II9.17E-04
20GO:0010007: magnesium chelatase complex9.79E-04
21GO:0015630: microtubule cytoskeleton1.40E-03
22GO:0009534: chloroplast thylakoid1.44E-03
23GO:0009898: cytoplasmic side of plasma membrane1.87E-03
24GO:0009523: photosystem II2.86E-03
25GO:0005773: vacuole2.99E-03
26GO:0010319: stromule3.93E-03
27GO:0009986: cell surface4.19E-03
28GO:0009539: photosystem II reaction center5.57E-03
29GO:0042644: chloroplast nucleoid6.31E-03
30GO:0045298: tubulin complex6.31E-03
31GO:0046658: anchored component of plasma membrane8.98E-03
32GO:0032040: small-subunit processome9.61E-03
33GO:0016021: integral component of membrane9.66E-03
34GO:0030076: light-harvesting complex1.24E-02
35GO:0030176: integral component of endoplasmic reticulum membrane1.24E-02
36GO:0005874: microtubule1.38E-02
37GO:0031969: chloroplast membrane1.44E-02
38GO:0048046: apoplast1.94E-02
39GO:0005871: kinesin complex2.11E-02
40GO:0005623: cell2.34E-02
41GO:0009522: photosystem I2.47E-02
42GO:0009504: cell plate2.60E-02
43GO:0005694: chromosome2.86E-02
44GO:0030529: intracellular ribonucleoprotein complex3.55E-02
45GO:0009707: chloroplast outer membrane4.29E-02
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Gene type



Gene DE type