co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G73602

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	5.08E-09
3	GO:0015979: photosynthesis	5.97E-08
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.68E-07
5	GO:0006000: fructose metabolic process	3.63E-06
6	GO:0090391: granum assembly	3.63E-06
7	GO:0005983: starch catabolic process	7.50E-06
8	GO:0006094: gluconeogenesis	9.42E-06
9	GO:0055114: oxidation-reduction process	1.07E-05
10	GO:0032259: methylation	2.73E-05
11	GO:0010196: nonphotochemical quenching	7.34E-05
12	GO:0006002: fructose 6-phosphate metabolic process	1.20E-04
13	GO:0000023: maltose metabolic process	1.40E-04
14	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.40E-04
15	GO:0000025: maltose catabolic process	1.40E-04
16	GO:0009090: homoserine biosynthetic process	1.40E-04
17	GO:0031338: regulation of vesicle fusion	1.40E-04
18	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.40E-04
19	GO:0010206: photosystem II repair	1.47E-04
20	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-04
21	GO:0015804: neutral amino acid transport	3.20E-04
22	GO:0006898: receptor-mediated endocytosis	3.20E-04
23	GO:0005976: polysaccharide metabolic process	3.20E-04
24	GO:0010353: response to trehalose	3.20E-04
25	GO:0005986: sucrose biosynthetic process	3.21E-04
26	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	5.26E-04
27	GO:0006518: peptide metabolic process	5.26E-04
28	GO:0090630: activation of GTPase activity	5.26E-04
29	GO:0071484: cellular response to light intensity	7.53E-04
30	GO:0009067: aspartate family amino acid biosynthetic process	7.53E-04
31	GO:0006662: glycerol ether metabolic process	9.78E-04
32	GO:0006109: regulation of carbohydrate metabolic process	9.98E-04
33	GO:0006021: inositol biosynthetic process	9.98E-04
34	GO:0071483: cellular response to blue light	9.98E-04
35	GO:0010021: amylopectin biosynthetic process	9.98E-04
36	GO:0019252: starch biosynthetic process	1.12E-03
37	GO:0016123: xanthophyll biosynthetic process	1.26E-03
38	GO:0006656: phosphatidylcholine biosynthetic process	1.26E-03
39	GO:0010117: photoprotection	1.26E-03
40	GO:0009904: chloroplast accumulation movement	1.26E-03
41	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.55E-03
42	GO:0010027: thylakoid membrane organization	1.71E-03
43	GO:0009903: chloroplast avoidance movement	1.86E-03
44	GO:0010189: vitamin E biosynthetic process	1.86E-03
45	GO:0009088: threonine biosynthetic process	1.86E-03
46	GO:0016311: dephosphorylation	2.11E-03
47	GO:0009610: response to symbiotic fungus	2.18E-03
48	GO:0009772: photosynthetic electron transport in photosystem II	2.18E-03
49	GO:1900057: positive regulation of leaf senescence	2.18E-03
50	GO:0019827: stem cell population maintenance	2.52E-03
51	GO:0005978: glycogen biosynthetic process	2.52E-03
52	GO:0009642: response to light intensity	2.52E-03
53	GO:0030091: protein repair	2.52E-03
54	GO:0015996: chlorophyll catabolic process	2.88E-03
55	GO:0034599: cellular response to oxidative stress	2.93E-03
56	GO:0009051: pentose-phosphate shunt, oxidative branch	3.26E-03
57	GO:0006754: ATP biosynthetic process	3.26E-03
58	GO:0009086: methionine biosynthetic process	3.65E-03
59	GO:0005982: starch metabolic process	3.65E-03
60	GO:0009688: abscisic acid biosynthetic process	4.06E-03
61	GO:0009641: shade avoidance	4.06E-03
62	GO:0009089: lysine biosynthetic process via diaminopimelate	4.48E-03
63	GO:0043085: positive regulation of catalytic activity	4.48E-03
64	GO:0009750: response to fructose	4.48E-03
65	GO:0044550: secondary metabolite biosynthetic process	4.70E-03
66	GO:0045454: cell redox homeostasis	5.31E-03
67	GO:0018107: peptidyl-threonine phosphorylation	5.37E-03
68	GO:0010143: cutin biosynthetic process	5.84E-03
69	GO:0019253: reductive pentose-phosphate cycle	5.84E-03
70	GO:0007015: actin filament organization	5.84E-03
71	GO:0010223: secondary shoot formation	5.84E-03
72	GO:0009266: response to temperature stimulus	5.84E-03
73	GO:0005985: sucrose metabolic process	6.32E-03
74	GO:0019762: glucosinolate catabolic process	6.81E-03
75	GO:0010025: wax biosynthetic process	6.81E-03
76	GO:0006636: unsaturated fatty acid biosynthetic process	6.81E-03
77	GO:0009695: jasmonic acid biosynthetic process	7.84E-03
78	GO:0061077: chaperone-mediated protein folding	8.38E-03
79	GO:0031408: oxylipin biosynthetic process	8.38E-03
80	GO:0003333: amino acid transmembrane transport	8.38E-03
81	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
82	GO:0051260: protein homooligomerization	8.38E-03
83	GO:0019748: secondary metabolic process	8.92E-03
84	GO:0006633: fatty acid biosynthetic process	1.09E-02
85	GO:0006606: protein import into nucleus	1.12E-02
86	GO:0009741: response to brassinosteroid	1.18E-02
87	GO:0010182: sugar mediated signaling pathway	1.18E-02
88	GO:0015986: ATP synthesis coupled proton transport	1.25E-02
89	GO:0008654: phospholipid biosynthetic process	1.31E-02
90	GO:1901657: glycosyl compound metabolic process	1.51E-02
91	GO:0009658: chloroplast organization	1.85E-02
92	GO:0010411: xyloglucan metabolic process	2.00E-02
93	GO:0000160: phosphorelay signal transduction system	2.23E-02
94	GO:0009813: flavonoid biosynthetic process	2.23E-02
95	GO:0010311: lateral root formation	2.23E-02
96	GO:0080167: response to karrikin	2.30E-02
97	GO:0009631: cold acclimation	2.39E-02
98	GO:0006865: amino acid transport	2.47E-02
99	GO:0006631: fatty acid metabolic process	2.88E-02
100	GO:0051707: response to other organism	3.06E-02
101	GO:0010114: response to red light	3.06E-02
102	GO:0042546: cell wall biogenesis	3.14E-02
103	GO:0009644: response to high light intensity	3.23E-02
104	GO:0009414: response to water deprivation	3.38E-02
105	GO:0006629: lipid metabolic process	3.39E-02
106	GO:0006812: cation transport	3.59E-02
107	GO:0006364: rRNA processing	3.78E-02
108	GO:0006813: potassium ion transport	3.78E-02
109	GO:0009736: cytokinin-activated signaling pathway	3.78E-02
110	GO:0010224: response to UV-B	3.87E-02
111	GO:0006096: glycolytic process	4.26E-02
112	GO:0043086: negative regulation of catalytic activity	4.26E-02
113	GO:0009553: embryo sac development	4.75E-02
114	GO:0009624: response to nematode	4.85E-02
115	GO:0018105: peptidyl-serine phosphorylation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
3	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
6	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0080082: esculin beta-glucosidase activity	0.00E+00
9	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
10	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
11	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
12	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
13	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
14	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.68E-07
16	GO:0018708: thiol S-methyltransferase activity	9.68E-07
17	GO:0008168: methyltransferase activity	6.47E-05
18	GO:0035671: enone reductase activity	1.40E-04
19	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.40E-04
20	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.40E-04
21	GO:0080079: cellobiose glucosidase activity	1.40E-04
22	GO:0050521: alpha-glucan, water dikinase activity	1.40E-04
23	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.40E-04
24	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.40E-04
25	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.40E-04
26	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.40E-04
27	GO:0004134: 4-alpha-glucanotransferase activity	1.40E-04
28	GO:0004321: fatty-acyl-CoA synthase activity	1.40E-04
29	GO:0034256: chlorophyll(ide) b reductase activity	1.40E-04
30	GO:0045486: naringenin 3-dioxygenase activity	1.40E-04
31	GO:0004412: homoserine dehydrogenase activity	3.20E-04
32	GO:0004512: inositol-3-phosphate synthase activity	3.20E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.20E-04
34	GO:0016630: protochlorophyllide reductase activity	3.20E-04
35	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.20E-04
36	GO:0015172: acidic amino acid transmembrane transporter activity	3.20E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	3.20E-04
38	GO:0010297: heteropolysaccharide binding	3.20E-04
39	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.26E-04
40	GO:0043169: cation binding	5.26E-04
41	GO:0004373: glycogen (starch) synthase activity	5.26E-04
42	GO:0004072: aspartate kinase activity	7.53E-04
43	GO:0019201: nucleotide kinase activity	7.53E-04
44	GO:0015175: neutral amino acid transmembrane transporter activity	7.53E-04
45	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.53E-04
46	GO:0016851: magnesium chelatase activity	7.53E-04
47	GO:0017057: 6-phosphogluconolactonase activity	7.53E-04
48	GO:0003756: protein disulfide isomerase activity	7.83E-04
49	GO:0047134: protein-disulfide reductase activity	8.45E-04
50	GO:0015035: protein disulfide oxidoreductase activity	9.73E-04
51	GO:0009011: starch synthase activity	9.98E-04
52	GO:0004791: thioredoxin-disulfide reductase activity	1.05E-03
53	GO:0017137: Rab GTPase binding	1.26E-03
54	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.26E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.35E-03
56	GO:2001070: starch binding	1.55E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	1.55E-03
58	GO:0008200: ion channel inhibitor activity	1.55E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.86E-03
60	GO:0102391: decanoate--CoA ligase activity	1.86E-03
61	GO:0004017: adenylate kinase activity	1.86E-03
62	GO:0004602: glutathione peroxidase activity	1.86E-03
63	GO:0004467: long-chain fatty acid-CoA ligase activity	2.18E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.88E-03
65	GO:0016207: 4-coumarate-CoA ligase activity	3.26E-03
66	GO:0071949: FAD binding	3.26E-03
67	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.65E-03
68	GO:0051537: 2 iron, 2 sulfur cluster binding	3.90E-03
69	GO:0008047: enzyme activator activity	4.06E-03
70	GO:0030234: enzyme regulator activity	4.06E-03
71	GO:0044183: protein binding involved in protein folding	4.48E-03
72	GO:0047372: acylglycerol lipase activity	4.48E-03
73	GO:0015386: potassium:proton antiporter activity	4.48E-03
74	GO:0004565: beta-galactosidase activity	5.37E-03
75	GO:0031072: heat shock protein binding	5.37E-03
76	GO:0016874: ligase activity	6.49E-03
77	GO:0031418: L-ascorbic acid binding	7.32E-03
78	GO:0004857: enzyme inhibitor activity	7.32E-03
79	GO:0015079: potassium ion transmembrane transporter activity	7.84E-03
80	GO:0016779: nucleotidyltransferase activity	8.92E-03
81	GO:0005249: voltage-gated potassium channel activity	1.12E-02
82	GO:0008536: Ran GTPase binding	1.18E-02
83	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.18E-02
84	GO:0048038: quinone binding	1.37E-02
85	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.37E-02
86	GO:0016491: oxidoreductase activity	1.42E-02
87	GO:0000156: phosphorelay response regulator activity	1.51E-02
88	GO:0016597: amino acid binding	1.71E-02
89	GO:0102483: scopolin beta-glucosidase activity	2.00E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.00E-02
91	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.08E-02
92	GO:0005096: GTPase activator activity	2.23E-02
93	GO:0004222: metalloendopeptidase activity	2.31E-02
94	GO:0003746: translation elongation factor activity	2.55E-02
95	GO:0003993: acid phosphatase activity	2.63E-02
96	GO:0008422: beta-glucosidase activity	2.72E-02
97	GO:0050661: NADP binding	2.80E-02
98	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.97E-02
99	GO:0004185: serine-type carboxypeptidase activity	3.06E-02
100	GO:0015293: symporter activity	3.32E-02
101	GO:0005506: iron ion binding	3.41E-02
102	GO:0046872: metal ion binding	3.54E-02
103	GO:0009055: electron carrier activity	3.64E-02
104	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
105	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.35E-02
106	GO:0051082: unfolded protein binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	9.13E-24
3	GO:0009507: chloroplast	7.92E-22
4	GO:0009535: chloroplast thylakoid membrane	5.41E-18
5	GO:0009941: chloroplast envelope	1.20E-10
6	GO:0009570: chloroplast stroma	3.98E-06
7	GO:0009579: thylakoid	2.81E-05
8	GO:0031969: chloroplast membrane	1.11E-04
9	GO:0009569: chloroplast starch grain	3.20E-04
10	GO:0010007: magnesium chelatase complex	5.26E-04
11	GO:0008076: voltage-gated potassium channel complex	7.53E-04
12	GO:0009706: chloroplast inner membrane	9.38E-04
13	GO:0009544: chloroplast ATP synthase complex	9.98E-04
14	GO:0010287: plastoglobule	1.16E-03
15	GO:0009543: chloroplast thylakoid lumen	1.24E-03
16	GO:0010319: stromule	1.53E-03
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.55E-03
18	GO:0009538: photosystem I reaction center	2.52E-03
19	GO:0031982: vesicle	2.52E-03
20	GO:0009501: amyloplast	2.52E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.26E-03
22	GO:0008180: COP9 signalosome	3.26E-03
23	GO:0031977: thylakoid lumen	3.33E-03
24	GO:0009654: photosystem II oxygen evolving complex	7.84E-03
25	GO:0042651: thylakoid membrane	7.84E-03
26	GO:0019898: extrinsic component of membrane	1.31E-02
27	GO:0019005: SCF ubiquitin ligase complex	2.16E-02
28	GO:0009707: chloroplast outer membrane	2.16E-02
29	GO:0048046: apoplast	2.24E-02
30	GO:0016020: membrane	2.38E-02
31	GO:0000502: proteasome complex	3.78E-02
32	GO:0012505: endomembrane system	4.75E-02