co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G73190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0000372: Group I intron splicing	0.00E+00
3	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
4	GO:1905177: tracheary element differentiation	0.00E+00
5	GO:0032206: positive regulation of telomere maintenance	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0070125: mitochondrial translational elongation	0.00E+00
9	GO:0070979: protein K11-linked ubiquitination	0.00E+00
10	GO:2000505: regulation of energy homeostasis	0.00E+00
11	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
12	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
13	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
14	GO:0000373: Group II intron splicing	7.34E-07
15	GO:0045038: protein import into chloroplast thylakoid membrane	2.44E-06
16	GO:0046620: regulation of organ growth	1.89E-05
17	GO:1900865: chloroplast RNA modification	4.86E-05
18	GO:2001141: regulation of RNA biosynthetic process	6.06E-05
19	GO:0009451: RNA modification	1.36E-04
20	GO:0010207: photosystem II assembly	1.43E-04
21	GO:0016123: xanthophyll biosynthetic process	1.64E-04
22	GO:0016554: cytidine to uridine editing	2.34E-04
23	GO:0009090: homoserine biosynthetic process	4.26E-04
24	GO:0043266: regulation of potassium ion transport	4.26E-04
25	GO:0010080: regulation of floral meristem growth	4.26E-04
26	GO:2000021: regulation of ion homeostasis	4.26E-04
27	GO:0006436: tryptophanyl-tRNA aminoacylation	4.26E-04
28	GO:0051247: positive regulation of protein metabolic process	4.26E-04
29	GO:1902458: positive regulation of stomatal opening	4.26E-04
30	GO:2000905: negative regulation of starch metabolic process	4.26E-04
31	GO:0048363: mucilage pectin metabolic process	4.26E-04
32	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	4.26E-04
33	GO:0016117: carotenoid biosynthetic process	4.73E-04
34	GO:0006353: DNA-templated transcription, termination	5.08E-04
35	GO:0048564: photosystem I assembly	5.08E-04
36	GO:0010497: plasmodesmata-mediated intercellular transport	6.20E-04
37	GO:0071482: cellular response to light stimulus	6.20E-04
38	GO:0009793: embryo development ending in seed dormancy	7.17E-04
39	GO:0006779: porphyrin-containing compound biosynthetic process	8.75E-04
40	GO:0009086: methionine biosynthetic process	8.75E-04
41	GO:1900871: chloroplast mRNA modification	9.21E-04
42	GO:0071668: plant-type cell wall assembly	9.21E-04
43	GO:0001682: tRNA 5'-leader removal	9.21E-04
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.21E-04
45	GO:2000123: positive regulation of stomatal complex development	9.21E-04
46	GO:0010024: phytochromobilin biosynthetic process	9.21E-04
47	GO:0060359: response to ammonium ion	9.21E-04
48	GO:0048255: mRNA stabilization	9.21E-04
49	GO:0006782: protoporphyrinogen IX biosynthetic process	1.02E-03
50	GO:0006352: DNA-templated transcription, initiation	1.17E-03
51	GO:0010027: thylakoid membrane organization	1.20E-03
52	GO:0006397: mRNA processing	1.27E-03
53	GO:0045037: protein import into chloroplast stroma	1.34E-03
54	GO:0010582: floral meristem determinacy	1.34E-03
55	GO:0006788: heme oxidation	1.50E-03
56	GO:0010022: meristem determinacy	1.50E-03
57	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.50E-03
58	GO:0010623: programmed cell death involved in cell development	1.50E-03
59	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.50E-03
60	GO:0051604: protein maturation	1.50E-03
61	GO:0006696: ergosterol biosynthetic process	1.50E-03
62	GO:0043157: response to cation stress	1.50E-03
63	GO:0045910: negative regulation of DNA recombination	1.50E-03
64	GO:0048586: regulation of long-day photoperiodism, flowering	1.50E-03
65	GO:0009658: chloroplast organization	1.51E-03
66	GO:0009725: response to hormone	1.52E-03
67	GO:0042989: sequestering of actin monomers	2.17E-03
68	GO:0046739: transport of virus in multicellular host	2.17E-03
69	GO:1990019: protein storage vacuole organization	2.17E-03
70	GO:0009067: aspartate family amino acid biosynthetic process	2.17E-03
71	GO:0051513: regulation of monopolar cell growth	2.17E-03
72	GO:0007231: osmosensory signaling pathway	2.17E-03
73	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.17E-03
74	GO:0051639: actin filament network formation	2.17E-03
75	GO:0010239: chloroplast mRNA processing	2.17E-03
76	GO:0051017: actin filament bundle assembly	2.38E-03
77	GO:2000038: regulation of stomatal complex development	2.91E-03
78	GO:0010508: positive regulation of autophagy	2.91E-03
79	GO:0051781: positive regulation of cell division	2.91E-03
80	GO:0051764: actin crosslink formation	2.91E-03
81	GO:0009765: photosynthesis, light harvesting	2.91E-03
82	GO:2000306: positive regulation of photomorphogenesis	2.91E-03
83	GO:0033500: carbohydrate homeostasis	2.91E-03
84	GO:0040008: regulation of growth	3.02E-03
85	GO:0009926: auxin polar transport	3.13E-03
86	GO:0006730: one-carbon metabolic process	3.16E-03
87	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.45E-03
88	GO:0030041: actin filament polymerization	3.73E-03
89	GO:0016120: carotene biosynthetic process	3.73E-03
90	GO:0010236: plastoquinone biosynthetic process	3.73E-03
91	GO:0010158: abaxial cell fate specification	3.73E-03
92	GO:0032876: negative regulation of DNA endoreduplication	3.73E-03
93	GO:0010375: stomatal complex patterning	3.73E-03
94	GO:0080110: sporopollenin biosynthetic process	3.73E-03
95	GO:0008033: tRNA processing	4.40E-03
96	GO:0010190: cytochrome b6f complex assembly	4.61E-03
97	GO:0033365: protein localization to organelle	4.61E-03
98	GO:0032973: amino acid export	4.61E-03
99	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.61E-03
100	GO:0009959: negative gravitropism	4.61E-03
101	GO:0006555: methionine metabolic process	4.61E-03
102	GO:0006655: phosphatidylglycerol biosynthetic process	4.61E-03
103	GO:0017148: negative regulation of translation	5.57E-03
104	GO:1901259: chloroplast rRNA processing	5.57E-03
105	GO:0030488: tRNA methylation	5.57E-03
106	GO:0009088: threonine biosynthetic process	5.57E-03
107	GO:0080086: stamen filament development	5.57E-03
108	GO:0009648: photoperiodism	5.57E-03
109	GO:0071333: cellular response to glucose stimulus	5.57E-03
110	GO:0042372: phylloquinone biosynthetic process	5.57E-03
111	GO:0000302: response to reactive oxygen species	5.86E-03
112	GO:0048316: seed development	5.92E-03
113	GO:0032502: developmental process	6.26E-03
114	GO:0009733: response to auxin	6.51E-03
115	GO:0051510: regulation of unidimensional cell growth	6.58E-03
116	GO:0015693: magnesium ion transport	6.58E-03
117	GO:0043090: amino acid import	6.58E-03
118	GO:0010050: vegetative phase change	6.58E-03
119	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.58E-03
120	GO:0010098: suspensor development	6.58E-03
121	GO:0009828: plant-type cell wall loosening	7.11E-03
122	GO:0007267: cell-cell signaling	7.55E-03
123	GO:0009850: auxin metabolic process	7.65E-03
124	GO:0042255: ribosome assembly	7.65E-03
125	GO:0032875: regulation of DNA endoreduplication	7.65E-03
126	GO:2000070: regulation of response to water deprivation	7.65E-03
127	GO:0000105: histidine biosynthetic process	7.65E-03
128	GO:0009734: auxin-activated signaling pathway	7.98E-03
129	GO:0009657: plastid organization	8.79E-03
130	GO:0015996: chlorophyll catabolic process	8.79E-03
131	GO:0007186: G-protein coupled receptor signaling pathway	8.79E-03
132	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.21E-03
133	GO:0010206: photosystem II repair	9.98E-03
134	GO:0080144: amino acid homeostasis	9.98E-03
135	GO:0048507: meristem development	9.98E-03
136	GO:0006098: pentose-phosphate shunt	9.98E-03
137	GO:0015995: chlorophyll biosynthetic process	1.00E-02
138	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.12E-02
139	GO:0000723: telomere maintenance	1.12E-02
140	GO:0035999: tetrahydrofolate interconversion	1.12E-02
141	GO:0009641: shade avoidance	1.25E-02
142	GO:0006298: mismatch repair	1.25E-02
143	GO:0016441: posttranscriptional gene silencing	1.25E-02
144	GO:0006949: syncytium formation	1.25E-02
145	GO:0010629: negative regulation of gene expression	1.25E-02
146	GO:0009299: mRNA transcription	1.25E-02
147	GO:0009089: lysine biosynthetic process via diaminopimelate	1.39E-02
148	GO:0009073: aromatic amino acid family biosynthetic process	1.39E-02
149	GO:0006415: translational termination	1.39E-02
150	GO:0006816: calcium ion transport	1.39E-02
151	GO:0045087: innate immune response	1.41E-02
152	GO:0005983: starch catabolic process	1.53E-02
153	GO:0016024: CDP-diacylglycerol biosynthetic process	1.53E-02
154	GO:0006094: gluconeogenesis	1.67E-02
155	GO:0030048: actin filament-based movement	1.67E-02
156	GO:0090351: seedling development	1.98E-02
157	GO:0010030: positive regulation of seed germination	1.98E-02
158	GO:0070588: calcium ion transmembrane transport	1.98E-02
159	GO:0007275: multicellular organism development	2.13E-02
160	GO:0000162: tryptophan biosynthetic process	2.14E-02
161	GO:0009664: plant-type cell wall organization	2.29E-02
162	GO:0007010: cytoskeleton organization	2.30E-02
163	GO:0009826: unidimensional cell growth	2.40E-02
164	GO:0008299: isoprenoid biosynthetic process	2.47E-02
165	GO:0006418: tRNA aminoacylation for protein translation	2.47E-02
166	GO:0010431: seed maturation	2.64E-02
167	GO:0006284: base-excision repair	3.18E-02
168	GO:0019722: calcium-mediated signaling	3.18E-02
169	GO:0010089: xylem development	3.18E-02
170	GO:0010584: pollen exine formation	3.18E-02
171	GO:0009740: gibberellic acid mediated signaling pathway	3.30E-02
172	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.37E-02
173	GO:0000271: polysaccharide biosynthetic process	3.56E-02
174	GO:0010501: RNA secondary structure unwinding	3.56E-02
175	GO:0010087: phloem or xylem histogenesis	3.56E-02
176	GO:0042631: cellular response to water deprivation	3.56E-02
177	GO:0009416: response to light stimulus	3.68E-02
178	GO:0009742: brassinosteroid mediated signaling pathway	3.71E-02
179	GO:0010305: leaf vascular tissue pattern formation	3.75E-02
180	GO:0010182: sugar mediated signaling pathway	3.75E-02
181	GO:0009958: positive gravitropism	3.75E-02
182	GO:0045489: pectin biosynthetic process	3.75E-02
183	GO:0015979: photosynthesis	3.87E-02
184	GO:0048544: recognition of pollen	3.95E-02
185	GO:0016032: viral process	4.57E-02
186	GO:0009630: gravitropism	4.57E-02
187	GO:0031047: gene silencing by RNA	4.57E-02
188	GO:0009845: seed germination	4.73E-02
189	GO:0006464: cellular protein modification process	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
7	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
8	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
11	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
12	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
13	GO:0003723: RNA binding	6.40E-06
14	GO:0004519: endonuclease activity	7.58E-05
15	GO:0001053: plastid sigma factor activity	1.06E-04
16	GO:0016987: sigma factor activity	1.06E-04
17	GO:0019203: carbohydrate phosphatase activity	4.26E-04
18	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	4.26E-04
19	GO:0051996: squalene synthase activity	4.26E-04
20	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.26E-04
21	GO:0004830: tryptophan-tRNA ligase activity	4.26E-04
22	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	4.26E-04
23	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.26E-04
24	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.26E-04
25	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.26E-04
26	GO:0050308: sugar-phosphatase activity	4.26E-04
27	GO:0004412: homoserine dehydrogenase activity	9.21E-04
28	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	9.21E-04
29	GO:0017118: lipoyltransferase activity	9.21E-04
30	GO:0080041: ADP-ribose pyrophosphohydrolase activity	9.21E-04
31	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	9.21E-04
32	GO:0043425: bHLH transcription factor binding	9.21E-04
33	GO:0008805: carbon-monoxide oxygenase activity	9.21E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	1.50E-03
35	GO:0016805: dipeptidase activity	1.50E-03
36	GO:0070402: NADPH binding	1.50E-03
37	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.50E-03
38	GO:0004180: carboxypeptidase activity	1.50E-03
39	GO:0003913: DNA photolyase activity	1.50E-03
40	GO:0008266: poly(U) RNA binding	1.72E-03
41	GO:0016149: translation release factor activity, codon specific	2.17E-03
42	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.17E-03
43	GO:0043023: ribosomal large subunit binding	2.17E-03
44	GO:0004300: enoyl-CoA hydratase activity	2.17E-03
45	GO:0001872: (1->3)-beta-D-glucan binding	2.17E-03
46	GO:0004072: aspartate kinase activity	2.17E-03
47	GO:0043047: single-stranded telomeric DNA binding	2.17E-03
48	GO:0003746: translation elongation factor activity	2.27E-03
49	GO:0005528: FK506 binding	2.38E-03
50	GO:0004392: heme oxygenase (decyclizing) activity	2.91E-03
51	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.91E-03
52	GO:0003785: actin monomer binding	3.73E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	3.73E-03
54	GO:0004130: cytochrome-c peroxidase activity	4.61E-03
55	GO:0004462: lactoylglutathione lyase activity	4.61E-03
56	GO:0016688: L-ascorbate peroxidase activity	4.61E-03
57	GO:2001070: starch binding	4.61E-03
58	GO:0030983: mismatched DNA binding	4.61E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	4.61E-03
60	GO:0004526: ribonuclease P activity	4.61E-03
61	GO:0004017: adenylate kinase activity	5.57E-03
62	GO:0042162: telomeric DNA binding	6.58E-03
63	GO:0009881: photoreceptor activity	6.58E-03
64	GO:0051015: actin filament binding	6.67E-03
65	GO:0043022: ribosome binding	7.65E-03
66	GO:0008312: 7S RNA binding	7.65E-03
67	GO:0003724: RNA helicase activity	8.79E-03
68	GO:0019843: rRNA binding	9.60E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.98E-03
70	GO:0003747: translation release factor activity	9.98E-03
71	GO:0004721: phosphoprotein phosphatase activity	1.00E-02
72	GO:0008236: serine-type peptidase activity	1.06E-02
73	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.39E-02
74	GO:0004161: dimethylallyltranstransferase activity	1.39E-02
75	GO:0015266: protein channel activity	1.67E-02
76	GO:0015095: magnesium ion transmembrane transporter activity	1.67E-02
77	GO:0031072: heat shock protein binding	1.67E-02
78	GO:0005262: calcium channel activity	1.67E-02
79	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.82E-02
80	GO:0003774: motor activity	1.82E-02
81	GO:0008146: sulfotransferase activity	1.98E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.13E-02
83	GO:0051536: iron-sulfur cluster binding	2.30E-02
84	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.46E-02
85	GO:0051087: chaperone binding	2.47E-02
86	GO:0003690: double-stranded DNA binding	2.55E-02
87	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.82E-02
88	GO:0030570: pectate lyase activity	3.00E-02
89	GO:0003729: mRNA binding	3.07E-02
90	GO:0003727: single-stranded RNA binding	3.18E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	3.37E-02
92	GO:0003779: actin binding	3.40E-02
93	GO:0008536: Ran GTPase binding	3.75E-02
94	GO:0050662: coenzyme binding	3.95E-02
95	GO:0010181: FMN binding	3.95E-02
96	GO:0016853: isomerase activity	3.95E-02
97	GO:0004872: receptor activity	4.15E-02
98	GO:0019901: protein kinase binding	4.15E-02
99	GO:0016829: lyase activity	4.73E-02
100	GO:0003684: damaged DNA binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.12E-34
2	GO:0009570: chloroplast stroma	4.63E-13
3	GO:0009941: chloroplast envelope	7.43E-07
4	GO:0080085: signal recognition particle, chloroplast targeting	8.09E-06
5	GO:0031969: chloroplast membrane	1.10E-04
6	GO:0030529: intracellular ribonucleoprotein complex	1.48E-04
7	GO:0009543: chloroplast thylakoid lumen	3.92E-04
8	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.20E-04
9	GO:0009535: chloroplast thylakoid membrane	6.50E-04
10	GO:0005697: telomerase holoenzyme complex	9.21E-04
11	GO:0009528: plastid inner membrane	1.50E-03
12	GO:0009508: plastid chromosome	1.52E-03
13	GO:0009579: thylakoid	1.60E-03
14	GO:0032432: actin filament bundle	2.17E-03
15	GO:0042651: thylakoid membrane	2.63E-03
16	GO:0009654: photosystem II oxygen evolving complex	2.63E-03
17	GO:0031977: thylakoid lumen	2.82E-03
18	GO:0009532: plastid stroma	2.89E-03
19	GO:0009526: plastid envelope	2.91E-03
20	GO:0009527: plastid outer membrane	2.91E-03
21	GO:0015629: actin cytoskeleton	3.45E-03
22	GO:0055035: plastid thylakoid membrane	3.73E-03
23	GO:0019898: extrinsic component of membrane	5.47E-03
24	GO:0009295: nucleoid	7.55E-03
25	GO:0010319: stromule	7.55E-03
26	GO:0000784: nuclear chromosome, telomeric region	8.79E-03
27	GO:0005623: cell	9.93E-03
28	GO:0005680: anaphase-promoting complex	9.98E-03
29	GO:0010494: cytoplasmic stress granule	9.98E-03
30	GO:0016604: nuclear body	1.12E-02
31	GO:0016459: myosin complex	1.25E-02
32	GO:0005759: mitochondrial matrix	1.28E-02
33	GO:0005884: actin filament	1.39E-02
34	GO:0000311: plastid large ribosomal subunit	1.53E-02
35	GO:0009534: chloroplast thylakoid	1.65E-02
36	GO:0005938: cell cortex	1.67E-02
37	GO:0005578: proteinaceous extracellular matrix	1.67E-02
38	GO:0030095: chloroplast photosystem II	1.82E-02
39	GO:0030176: integral component of endoplasmic reticulum membrane	1.98E-02
40	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.18E-02
41	GO:0031965: nuclear membrane	4.15E-02
42	GO:0010287: plastoglobule	4.15E-02