Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G73060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009069: serine family amino acid metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
7GO:0070178: D-serine metabolic process0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0017038: protein import0.00E+00
10GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
11GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
12GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
13GO:0015805: S-adenosyl-L-methionine transport0.00E+00
14GO:0042407: cristae formation0.00E+00
15GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
16GO:0018023: peptidyl-lysine trimethylation0.00E+00
17GO:0009773: photosynthetic electron transport in photosystem I1.57E-08
18GO:0015979: photosynthesis6.52E-08
19GO:0015995: chlorophyll biosynthetic process2.95E-07
20GO:0032544: plastid translation1.57E-05
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.12E-05
22GO:0051085: chaperone mediated protein folding requiring cofactor4.12E-05
23GO:0005983: starch catabolic process5.98E-05
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.66E-04
25GO:0010190: cytochrome b6f complex assembly1.66E-04
26GO:0009658: chloroplast organization1.67E-04
27GO:0061077: chaperone-mediated protein folding1.92E-04
28GO:0009955: adaxial/abaxial pattern specification2.25E-04
29GO:0042026: protein refolding2.25E-04
30GO:1901259: chloroplast rRNA processing2.25E-04
31GO:0009772: photosynthetic electron transport in photosystem II2.93E-04
32GO:0043007: maintenance of rDNA3.42E-04
33GO:0034337: RNA folding3.42E-04
34GO:0005991: trehalose metabolic process3.42E-04
35GO:0000023: maltose metabolic process3.42E-04
36GO:0000476: maturation of 4.5S rRNA3.42E-04
37GO:0000967: rRNA 5'-end processing3.42E-04
38GO:0005980: glycogen catabolic process3.42E-04
39GO:0030198: extracellular matrix organization3.42E-04
40GO:0042371: vitamin K biosynthetic process3.42E-04
41GO:0043686: co-translational protein modification3.42E-04
42GO:0009657: plastid organization4.51E-04
43GO:0006783: heme biosynthetic process5.41E-04
44GO:0006568: tryptophan metabolic process7.45E-04
45GO:0010270: photosystem II oxygen evolving complex assembly7.45E-04
46GO:0034470: ncRNA processing7.45E-04
47GO:0009629: response to gravity7.45E-04
48GO:0006782: protoporphyrinogen IX biosynthetic process7.45E-04
49GO:0007154: cell communication7.45E-04
50GO:0018026: peptidyl-lysine monomethylation7.45E-04
51GO:0006423: cysteinyl-tRNA aminoacylation7.45E-04
52GO:0042254: ribosome biogenesis8.76E-04
53GO:0009817: defense response to fungus, incompatible interaction1.11E-03
54GO:0009813: flavonoid biosynthetic process1.18E-03
55GO:0006412: translation1.18E-03
56GO:2001295: malonyl-CoA biosynthetic process1.21E-03
57GO:0006696: ergosterol biosynthetic process1.21E-03
58GO:0006633: fatty acid biosynthetic process1.69E-03
59GO:0045338: farnesyl diphosphate metabolic process1.74E-03
60GO:0006166: purine ribonucleoside salvage1.74E-03
61GO:0006020: inositol metabolic process1.74E-03
62GO:0071484: cellular response to light intensity1.74E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch1.74E-03
64GO:0010731: protein glutathionylation1.74E-03
65GO:0046739: transport of virus in multicellular host1.74E-03
66GO:0006168: adenine salvage1.74E-03
67GO:0006986: response to unfolded protein1.74E-03
68GO:0006418: tRNA aminoacylation for protein translation1.90E-03
69GO:0010109: regulation of photosynthesis2.33E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system2.33E-03
71GO:0022622: root system development2.33E-03
72GO:0006021: inositol biosynthetic process2.33E-03
73GO:0009686: gibberellin biosynthetic process2.49E-03
74GO:0031365: N-terminal protein amino acid modification2.98E-03
75GO:0044209: AMP salvage2.98E-03
76GO:0032543: mitochondrial translation2.98E-03
77GO:0016120: carotene biosynthetic process2.98E-03
78GO:0006564: L-serine biosynthetic process2.98E-03
79GO:0010236: plastoquinone biosynthetic process2.98E-03
80GO:0006457: protein folding3.16E-03
81GO:0009958: positive gravitropism3.41E-03
82GO:0006662: glycerol ether metabolic process3.41E-03
83GO:0010197: polar nucleus fusion3.41E-03
84GO:0006751: glutathione catabolic process3.68E-03
85GO:0009959: negative gravitropism3.68E-03
86GO:1902456: regulation of stomatal opening3.68E-03
87GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.68E-03
88GO:0006828: manganese ion transport3.68E-03
89GO:0000741: karyogamy3.68E-03
90GO:0046855: inositol phosphate dephosphorylation3.68E-03
91GO:0006563: L-serine metabolic process3.68E-03
92GO:0019252: starch biosynthetic process3.94E-03
93GO:0042372: phylloquinone biosynthetic process4.43E-03
94GO:0006458: 'de novo' protein folding4.43E-03
95GO:0048280: vesicle fusion with Golgi apparatus4.43E-03
96GO:0032880: regulation of protein localization5.23E-03
97GO:0010161: red light signaling pathway5.23E-03
98GO:0048564: photosystem I assembly6.08E-03
99GO:0006605: protein targeting6.08E-03
100GO:0006353: DNA-templated transcription, termination6.08E-03
101GO:0010078: maintenance of root meristem identity6.08E-03
102GO:0070413: trehalose metabolism in response to stress6.08E-03
103GO:0010027: thylakoid membrane organization6.10E-03
104GO:0043562: cellular response to nitrogen levels6.98E-03
105GO:0010099: regulation of photomorphogenesis6.98E-03
106GO:0071482: cellular response to light stimulus6.98E-03
107GO:0010497: plasmodesmata-mediated intercellular transport6.98E-03
108GO:0010100: negative regulation of photomorphogenesis6.98E-03
109GO:0046685: response to arsenic-containing substance7.91E-03
110GO:0009821: alkaloid biosynthetic process7.91E-03
111GO:0010206: photosystem II repair7.91E-03
112GO:0046916: cellular transition metal ion homeostasis7.91E-03
113GO:0005982: starch metabolic process8.89E-03
114GO:0043067: regulation of programmed cell death8.89E-03
115GO:0006779: porphyrin-containing compound biosynthetic process8.89E-03
116GO:0048527: lateral root development9.22E-03
117GO:0045036: protein targeting to chloroplast9.92E-03
118GO:0006949: syncytium formation9.92E-03
119GO:0006896: Golgi to vacuole transport9.92E-03
120GO:0034599: cellular response to oxidative stress1.06E-02
121GO:0009684: indoleacetic acid biosynthetic process1.10E-02
122GO:0006816: calcium ion transport1.10E-02
123GO:0006415: translational termination1.10E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.10E-02
125GO:0006631: fatty acid metabolic process1.20E-02
126GO:0006790: sulfur compound metabolic process1.21E-02
127GO:0016024: CDP-diacylglycerol biosynthetic process1.21E-02
128GO:0010114: response to red light1.31E-02
129GO:0010588: cotyledon vascular tissue pattern formation1.32E-02
130GO:2000012: regulation of auxin polar transport1.32E-02
131GO:0010102: lateral root morphogenesis1.32E-02
132GO:0009266: response to temperature stimulus1.44E-02
133GO:0048467: gynoecium development1.44E-02
134GO:0010143: cutin biosynthetic process1.44E-02
135GO:0010207: photosystem II assembly1.44E-02
136GO:0019253: reductive pentose-phosphate cycle1.44E-02
137GO:0046854: phosphatidylinositol phosphorylation1.56E-02
138GO:0019853: L-ascorbic acid biosynthetic process1.56E-02
139GO:0006810: transport1.60E-02
140GO:0005992: trehalose biosynthetic process1.82E-02
141GO:0051017: actin filament bundle assembly1.82E-02
142GO:0010187: negative regulation of seed germination1.82E-02
143GO:0009768: photosynthesis, light harvesting in photosystem I1.95E-02
144GO:0009735: response to cytokinin1.98E-02
145GO:0019915: lipid storage2.08E-02
146GO:0016114: terpenoid biosynthetic process2.08E-02
147GO:0048367: shoot system development2.16E-02
148GO:0030245: cellulose catabolic process2.22E-02
149GO:0016226: iron-sulfur cluster assembly2.22E-02
150GO:0006730: one-carbon metabolic process2.22E-02
151GO:0007005: mitochondrion organization2.22E-02
152GO:0006012: galactose metabolic process2.37E-02
153GO:0009740: gibberellic acid mediated signaling pathway2.37E-02
154GO:0009306: protein secretion2.51E-02
155GO:0006396: RNA processing2.59E-02
156GO:0016117: carotenoid biosynthetic process2.66E-02
157GO:0042147: retrograde transport, endosome to Golgi2.66E-02
158GO:0008284: positive regulation of cell proliferation2.66E-02
159GO:0045454: cell redox homeostasis2.73E-02
160GO:0010087: phloem or xylem histogenesis2.81E-02
161GO:0080022: primary root development2.81E-02
162GO:0010182: sugar mediated signaling pathway2.96E-02
163GO:0010268: brassinosteroid homeostasis2.96E-02
164GO:0009646: response to absence of light3.12E-02
165GO:0048544: recognition of pollen3.12E-02
166GO:0015986: ATP synthesis coupled proton transport3.12E-02
167GO:0009851: auxin biosynthetic process3.28E-02
168GO:0006623: protein targeting to vacuole3.28E-02
169GO:0048825: cotyledon development3.28E-02
170GO:0016132: brassinosteroid biosynthetic process3.44E-02
171GO:0071554: cell wall organization or biogenesis3.44E-02
172GO:0006891: intra-Golgi vesicle-mediated transport3.44E-02
173GO:0055114: oxidation-reduction process3.63E-02
174GO:0009790: embryo development3.68E-02
175GO:0009409: response to cold3.75E-02
176GO:1901657: glycosyl compound metabolic process3.78E-02
177GO:0010090: trichome morphogenesis3.78E-02
178GO:0016125: sterol metabolic process3.95E-02
179GO:0009828: plant-type cell wall loosening3.95E-02
180GO:0006413: translational initiation4.05E-02
181GO:0016126: sterol biosynthetic process4.47E-02
182GO:0005975: carbohydrate metabolic process4.51E-02
183GO:0009607: response to biotic stimulus4.65E-02
184GO:0010029: regulation of seed germination4.65E-02
185GO:0009627: systemic acquired resistance4.84E-02
186GO:0009739: response to gibberellin4.84E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0005201: extracellular matrix structural constituent0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0005363: maltose transmembrane transporter activity0.00E+00
7GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
8GO:0090711: FMN hydrolase activity0.00E+00
9GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
10GO:0010303: limit dextrinase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
14GO:0030378: serine racemase activity0.00E+00
15GO:0003941: L-serine ammonia-lyase activity0.00E+00
16GO:0051060: pullulanase activity0.00E+00
17GO:0004822: isoleucine-tRNA ligase activity0.00E+00
18GO:0008721: D-serine ammonia-lyase activity0.00E+00
19GO:0004823: leucine-tRNA ligase activity0.00E+00
20GO:0019843: rRNA binding1.19E-07
21GO:0005528: FK506 binding1.36E-07
22GO:0045430: chalcone isomerase activity6.04E-07
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.09E-06
24GO:0005504: fatty acid binding1.87E-05
25GO:0002161: aminoacyl-tRNA editing activity1.87E-05
26GO:0016851: magnesium chelatase activity4.12E-05
27GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.33E-05
28GO:0051082: unfolded protein binding1.32E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity3.42E-04
30GO:0008184: glycogen phosphorylase activity3.42E-04
31GO:0051777: ent-kaurenoate oxidase activity3.42E-04
32GO:0004856: xylulokinase activity3.42E-04
33GO:0050308: sugar-phosphatase activity3.42E-04
34GO:0004645: phosphorylase activity3.42E-04
35GO:0019203: carbohydrate phosphatase activity3.42E-04
36GO:0004853: uroporphyrinogen decarboxylase activity3.42E-04
37GO:0042586: peptide deformylase activity3.42E-04
38GO:0005080: protein kinase C binding3.42E-04
39GO:0010313: phytochrome binding3.42E-04
40GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.42E-04
41GO:0003735: structural constituent of ribosome4.90E-04
42GO:0004618: phosphoglycerate kinase activity7.45E-04
43GO:0003839: gamma-glutamylcyclotransferase activity7.45E-04
44GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.45E-04
45GO:0004617: phosphoglycerate dehydrogenase activity7.45E-04
46GO:0052832: inositol monophosphate 3-phosphatase activity7.45E-04
47GO:0033201: alpha-1,4-glucan synthase activity7.45E-04
48GO:0004817: cysteine-tRNA ligase activity7.45E-04
49GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.45E-04
50GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.45E-04
51GO:0016630: protochlorophyllide reductase activity7.45E-04
52GO:0008934: inositol monophosphate 1-phosphatase activity7.45E-04
53GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.45E-04
54GO:0052833: inositol monophosphate 4-phosphatase activity7.45E-04
55GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.45E-04
56GO:0008967: phosphoglycolate phosphatase activity7.45E-04
57GO:0044183: protein binding involved in protein folding8.59E-04
58GO:0031072: heat shock protein binding1.11E-03
59GO:0015462: ATPase-coupled protein transmembrane transporter activity1.21E-03
60GO:0004373: glycogen (starch) synthase activity1.21E-03
61GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
62GO:0004075: biotin carboxylase activity1.21E-03
63GO:0004751: ribose-5-phosphate isomerase activity1.21E-03
64GO:0045174: glutathione dehydrogenase (ascorbate) activity1.21E-03
65GO:0043023: ribosomal large subunit binding1.74E-03
66GO:0008097: 5S rRNA binding1.74E-03
67GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.74E-03
68GO:0004375: glycine dehydrogenase (decarboxylating) activity1.74E-03
69GO:0003999: adenine phosphoribosyltransferase activity1.74E-03
70GO:0016149: translation release factor activity, codon specific1.74E-03
71GO:0004659: prenyltransferase activity2.33E-03
72GO:0016279: protein-lysine N-methyltransferase activity2.33E-03
73GO:0009011: starch synthase activity2.33E-03
74GO:0047134: protein-disulfide reductase activity2.93E-03
75GO:0004812: aminoacyl-tRNA ligase activity2.93E-03
76GO:0003989: acetyl-CoA carboxylase activity2.98E-03
77GO:0016846: carbon-sulfur lyase activity2.98E-03
78GO:0003959: NADPH dehydrogenase activity2.98E-03
79GO:0016773: phosphotransferase activity, alcohol group as acceptor2.98E-03
80GO:0004791: thioredoxin-disulfide reductase activity3.67E-03
81GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.68E-03
82GO:2001070: starch binding3.68E-03
83GO:0004556: alpha-amylase activity3.68E-03
84GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.68E-03
85GO:0048038: quinone binding4.22E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.43E-03
87GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.43E-03
88GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.80E-03
89GO:0016791: phosphatase activity5.11E-03
90GO:0004033: aldo-keto reductase (NADP) activity6.08E-03
91GO:0004525: ribonuclease III activity6.08E-03
92GO:0046914: transition metal ion binding6.98E-03
93GO:0003747: translation release factor activity7.91E-03
94GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.91E-03
95GO:0016844: strictosidine synthase activity8.89E-03
96GO:0005384: manganese ion transmembrane transporter activity8.89E-03
97GO:0008559: xenobiotic-transporting ATPase activity1.10E-02
98GO:0000049: tRNA binding1.21E-02
99GO:0004089: carbonate dehydratase activity1.32E-02
100GO:0015095: magnesium ion transmembrane transporter activity1.32E-02
101GO:0003725: double-stranded RNA binding1.32E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity1.32E-02
103GO:0043621: protein self-association1.41E-02
104GO:0008083: growth factor activity1.44E-02
105GO:0008266: poly(U) RNA binding1.44E-02
106GO:0031409: pigment binding1.69E-02
107GO:0051536: iron-sulfur cluster binding1.82E-02
108GO:0051087: chaperone binding1.95E-02
109GO:0005509: calcium ion binding1.97E-02
110GO:0008810: cellulase activity2.37E-02
111GO:0003727: single-stranded RNA binding2.51E-02
112GO:0015035: protein disulfide oxidoreductase activity2.59E-02
113GO:0003713: transcription coactivator activity2.96E-02
114GO:0001085: RNA polymerase II transcription factor binding2.96E-02
115GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.96E-02
116GO:0030170: pyridoxal phosphate binding3.50E-02
117GO:0008565: protein transporter activity3.77E-02
118GO:0051015: actin filament binding3.78E-02
119GO:0000156: phosphorelay response regulator activity3.78E-02
120GO:0008237: metallopeptidase activity4.12E-02
121GO:0016413: O-acetyltransferase activity4.30E-02
122GO:0016597: amino acid binding4.30E-02
123GO:0016168: chlorophyll binding4.65E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast2.82E-59
4GO:0009570: chloroplast stroma4.54E-42
5GO:0009535: chloroplast thylakoid membrane2.68E-24
6GO:0009941: chloroplast envelope9.58E-22
7GO:0009579: thylakoid1.57E-20
8GO:0009534: chloroplast thylakoid1.85E-15
9GO:0009543: chloroplast thylakoid lumen4.10E-13
10GO:0031977: thylakoid lumen2.27E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.48E-09
12GO:0031969: chloroplast membrane3.46E-08
13GO:0009654: photosystem II oxygen evolving complex7.49E-06
14GO:0010007: magnesium chelatase complex1.87E-05
15GO:0019898: extrinsic component of membrane3.54E-05
16GO:0005840: ribosome6.15E-05
17GO:0009547: plastid ribosome3.42E-04
18GO:0010319: stromule6.88E-04
19GO:0033281: TAT protein transport complex1.21E-03
20GO:0009536: plastid1.25E-03
21GO:0030095: chloroplast photosystem II1.25E-03
22GO:0005960: glycine cleavage complex1.74E-03
23GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.68E-03
24GO:0009840: chloroplastic endopeptidase Clp complex4.43E-03
25GO:0009295: nucleoid5.43E-03
26GO:0012507: ER to Golgi transport vesicle membrane6.08E-03
27GO:0009501: amyloplast6.08E-03
28GO:0005763: mitochondrial small ribosomal subunit7.91E-03
29GO:0009707: chloroplast outer membrane7.97E-03
30GO:0000311: plastid large ribosomal subunit1.21E-02
31GO:0032040: small-subunit processome1.21E-02
32GO:0009508: plastid chromosome1.32E-02
33GO:0030076: light-harvesting complex1.56E-02
34GO:0042651: thylakoid membrane1.95E-02
35GO:0015935: small ribosomal subunit2.08E-02
36GO:0009532: plastid stroma2.08E-02
37GO:0015629: actin cytoskeleton2.37E-02
38GO:0009706: chloroplast inner membrane2.52E-02
39GO:0010287: plastoglobule2.99E-02
40GO:0005789: endoplasmic reticulum membrane4.56E-02
41GO:0005667: transcription factor complex4.84E-02
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Gene type



Gene DE type