co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G72416

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
6	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
7	GO:0046620: regulation of organ growth	2.92E-05
8	GO:0030488: tRNA methylation	4.12E-04
9	GO:0046520: sphingoid biosynthetic process	5.09E-04
10	GO:0010080: regulation of floral meristem growth	5.09E-04
11	GO:0015904: tetracycline transport	5.09E-04
12	GO:0034757: negative regulation of iron ion transport	5.09E-04
13	GO:0009926: auxin polar transport	7.84E-04
14	GO:0000373: Group II intron splicing	9.59E-04
15	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.87E-04
16	GO:0010271: regulation of chlorophyll catabolic process	1.10E-03
17	GO:0001736: establishment of planar polarity	1.10E-03
18	GO:0009786: regulation of asymmetric cell division	1.10E-03
19	GO:0031648: protein destabilization	1.10E-03
20	GO:2000123: positive regulation of stomatal complex development	1.10E-03
21	GO:0010024: phytochromobilin biosynthetic process	1.10E-03
22	GO:0048829: root cap development	1.32E-03
23	GO:0009733: response to auxin	1.54E-03
24	GO:0010582: floral meristem determinacy	1.74E-03
25	GO:0010022: meristem determinacy	1.79E-03
26	GO:0080117: secondary growth	1.79E-03
27	GO:0080055: low-affinity nitrate transport	1.79E-03
28	GO:0071398: cellular response to fatty acid	1.79E-03
29	GO:0090506: axillary shoot meristem initiation	1.79E-03
30	GO:1902448: positive regulation of shade avoidance	1.79E-03
31	GO:0000160: phosphorelay signal transduction system	2.51E-03
32	GO:1990019: protein storage vacuole organization	2.60E-03
33	GO:0010371: regulation of gibberellin biosynthetic process	2.60E-03
34	GO:0051513: regulation of monopolar cell growth	2.60E-03
35	GO:0051639: actin filament network formation	2.60E-03
36	GO:0034059: response to anoxia	2.60E-03
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.60E-03
38	GO:2000038: regulation of stomatal complex development	3.50E-03
39	GO:0009755: hormone-mediated signaling pathway	3.50E-03
40	GO:0051764: actin crosslink formation	3.50E-03
41	GO:0010431: seed maturation	3.77E-03
42	GO:0009734: auxin-activated signaling pathway	3.95E-03
43	GO:0009696: salicylic acid metabolic process	4.49E-03
44	GO:0080110: sporopollenin biosynthetic process	4.49E-03
45	GO:0045487: gibberellin catabolic process	4.49E-03
46	GO:0016131: brassinosteroid metabolic process	4.49E-03
47	GO:0048497: maintenance of floral organ identity	4.49E-03
48	GO:0010438: cellular response to sulfur starvation	4.49E-03
49	GO:0010375: stomatal complex patterning	4.49E-03
50	GO:0071215: cellular response to abscisic acid stimulus	4.51E-03
51	GO:0040008: regulation of growth	4.55E-03
52	GO:0009913: epidermal cell differentiation	5.56E-03
53	GO:1902456: regulation of stomatal opening	5.56E-03
54	GO:0048831: regulation of shoot system development	5.56E-03
55	GO:0003006: developmental process involved in reproduction	5.56E-03
56	GO:0010358: leaf shaping	5.56E-03
57	GO:0016554: cytidine to uridine editing	5.56E-03
58	GO:0010087: phloem or xylem histogenesis	5.75E-03
59	GO:0009958: positive gravitropism	6.20E-03
60	GO:0009741: response to brassinosteroid	6.20E-03
61	GO:0009736: cytokinin-activated signaling pathway	6.46E-03
62	GO:0031930: mitochondria-nucleus signaling pathway	6.71E-03
63	GO:0048509: regulation of meristem development	6.71E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	6.71E-03
65	GO:0009909: regulation of flower development	7.37E-03
66	GO:0007165: signal transduction	7.48E-03
67	GO:0016132: brassinosteroid biosynthetic process	7.67E-03
68	GO:0071554: cell wall organization or biogenesis	7.67E-03
69	GO:0000082: G1/S transition of mitotic cell cycle	7.95E-03
70	GO:0010444: guard mother cell differentiation	7.95E-03
71	GO:0006955: immune response	7.95E-03
72	GO:1900056: negative regulation of leaf senescence	7.95E-03
73	GO:0010583: response to cyclopentenone	8.20E-03
74	GO:0032502: developmental process	8.20E-03
75	GO:0006402: mRNA catabolic process	9.25E-03
76	GO:0010439: regulation of glucosinolate biosynthetic process	9.25E-03
77	GO:0009690: cytokinin metabolic process	9.25E-03
78	GO:0009704: de-etiolation	9.25E-03
79	GO:2000070: regulation of response to water deprivation	9.25E-03
80	GO:0000105: histidine biosynthetic process	9.25E-03
81	GO:0009819: drought recovery	9.25E-03
82	GO:0010497: plasmodesmata-mediated intercellular transport	1.06E-02
83	GO:0009657: plastid organization	1.06E-02
84	GO:0032544: plastid translation	1.06E-02
85	GO:0007186: G-protein coupled receptor signaling pathway	1.06E-02
86	GO:0048507: meristem development	1.21E-02
87	GO:0051865: protein autoubiquitination	1.21E-02
88	GO:0009056: catabolic process	1.21E-02
89	GO:0009638: phototropism	1.36E-02
90	GO:0010018: far-red light signaling pathway	1.36E-02
91	GO:1900865: chloroplast RNA modification	1.36E-02
92	GO:0009299: mRNA transcription	1.52E-02
93	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.52E-02
94	GO:0009641: shade avoidance	1.52E-02
95	GO:0016441: posttranscriptional gene silencing	1.52E-02
96	GO:0031627: telomeric loop formation	1.52E-02
97	GO:0010311: lateral root formation	1.53E-02
98	GO:0006415: translational termination	1.68E-02
99	GO:0009750: response to fructose	1.68E-02
100	GO:0048765: root hair cell differentiation	1.68E-02
101	GO:0009682: induced systemic resistance	1.68E-02
102	GO:0009867: jasmonic acid mediated signaling pathway	1.85E-02
103	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.85E-02
104	GO:0006351: transcription, DNA-templated	1.85E-02
105	GO:0009416: response to light stimulus	1.90E-02
106	GO:0016567: protein ubiquitination	1.90E-02
107	GO:0010102: lateral root morphogenesis	2.03E-02
108	GO:0009785: blue light signaling pathway	2.03E-02
109	GO:2000028: regulation of photoperiodism, flowering	2.03E-02
110	GO:0009725: response to hormone	2.03E-02
111	GO:0009767: photosynthetic electron transport chain	2.03E-02
112	GO:0010588: cotyledon vascular tissue pattern formation	2.03E-02
113	GO:0006631: fatty acid metabolic process	2.20E-02
114	GO:0010207: photosystem II assembly	2.21E-02
115	GO:0010223: secondary shoot formation	2.21E-02
116	GO:0048467: gynoecium development	2.21E-02
117	GO:0016042: lipid catabolic process	2.26E-02
118	GO:0009744: response to sucrose	2.39E-02
119	GO:0071555: cell wall organization	2.42E-02
120	GO:0006468: protein phosphorylation	2.42E-02
121	GO:0042546: cell wall biogenesis	2.49E-02
122	GO:0042753: positive regulation of circadian rhythm	2.59E-02
123	GO:0000162: tryptophan biosynthetic process	2.59E-02
124	GO:0051017: actin filament bundle assembly	2.79E-02
125	GO:0005992: trehalose biosynthetic process	2.79E-02
126	GO:0016114: terpenoid biosynthetic process	3.20E-02
127	GO:0003333: amino acid transmembrane transport	3.20E-02
128	GO:0016998: cell wall macromolecule catabolic process	3.20E-02
129	GO:0048511: rhythmic process	3.20E-02
130	GO:0009826: unidimensional cell growth	3.36E-02
131	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.42E-02
132	GO:0009686: gibberellin biosynthetic process	3.64E-02
133	GO:0010082: regulation of root meristem growth	3.64E-02
134	GO:0009294: DNA mediated transformation	3.64E-02
135	GO:0001944: vasculature development	3.64E-02
136	GO:0009625: response to insect	3.64E-02
137	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.64E-02
138	GO:0009693: ethylene biosynthetic process	3.64E-02
139	GO:0006284: base-excision repair	3.86E-02
140	GO:0042127: regulation of cell proliferation	3.86E-02
141	GO:0010584: pollen exine formation	3.86E-02
142	GO:0048316: seed development	3.93E-02
143	GO:0070417: cellular response to cold	4.08E-02
144	GO:0080022: primary root development	4.32E-02
145	GO:0010501: RNA secondary structure unwinding	4.32E-02
146	GO:0010118: stomatal movement	4.32E-02
147	GO:0006355: regulation of transcription, DNA-templated	4.45E-02
148	GO:0010305: leaf vascular tissue pattern formation	4.55E-02
149	GO:0010182: sugar mediated signaling pathway	4.55E-02
150	GO:0010268: brassinosteroid homeostasis	4.55E-02
151	GO:0006396: RNA processing	4.71E-02
152	GO:0009735: response to cytokinin	4.77E-02
153	GO:0048544: recognition of pollen	4.79E-02
154	GO:0007018: microtubule-based movement	4.79E-02
155	GO:0042752: regulation of circadian rhythm	4.79E-02
156	GO:0009646: response to absence of light	4.79E-02
157	GO:0051726: regulation of cell cycle	4.84E-02
158	GO:0009742: brassinosteroid mediated signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.09E-04
7	GO:0010012: steroid 22-alpha hydroxylase activity	5.09E-04
8	GO:0000170: sphingosine hydroxylase activity	5.09E-04
9	GO:0050139: nicotinate-N-glucosyltransferase activity	5.09E-04
10	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.09E-04
11	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.09E-04
12	GO:0005227: calcium activated cation channel activity	5.09E-04
13	GO:0042834: peptidoglycan binding	5.09E-04
14	GO:0008493: tetracycline transporter activity	1.10E-03
15	GO:0009884: cytokinin receptor activity	1.10E-03
16	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.10E-03
17	GO:0043425: bHLH transcription factor binding	1.10E-03
18	GO:0010296: prenylcysteine methylesterase activity	1.10E-03
19	GO:0008805: carbon-monoxide oxygenase activity	1.10E-03
20	GO:0042284: sphingolipid delta-4 desaturase activity	1.10E-03
21	GO:0004871: signal transducer activity	1.44E-03
22	GO:0005034: osmosensor activity	1.79E-03
23	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.79E-03
24	GO:0016149: translation release factor activity, codon specific	2.60E-03
25	GO:0080031: methyl salicylate esterase activity	2.60E-03
26	GO:0001872: (1->3)-beta-D-glucan binding	2.60E-03
27	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.60E-03
28	GO:0019199: transmembrane receptor protein kinase activity	3.50E-03
29	GO:0010011: auxin binding	3.50E-03
30	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.50E-03
31	GO:0010328: auxin influx transmembrane transporter activity	3.50E-03
32	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.49E-03
33	GO:0008725: DNA-3-methyladenine glycosylase activity	4.49E-03
34	GO:0004130: cytochrome-c peroxidase activity	5.56E-03
35	GO:0016688: L-ascorbate peroxidase activity	5.56E-03
36	GO:0080030: methyl indole-3-acetate esterase activity	5.56E-03
37	GO:0004709: MAP kinase kinase kinase activity	5.56E-03
38	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.20E-03
39	GO:0050662: coenzyme binding	6.67E-03
40	GO:0051753: mannan synthase activity	6.71E-03
41	GO:0019900: kinase binding	6.71E-03
42	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.71E-03
43	GO:0016832: aldehyde-lyase activity	6.71E-03
44	GO:0000156: phosphorelay response regulator activity	8.75E-03
45	GO:0051015: actin filament binding	8.75E-03
46	GO:0016759: cellulose synthase activity	9.31E-03
47	GO:0016788: hydrolase activity, acting on ester bonds	9.78E-03
48	GO:0016413: O-acetyltransferase activity	1.05E-02
49	GO:0008173: RNA methyltransferase activity	1.06E-02
50	GO:0003724: RNA helicase activity	1.06E-02
51	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.21E-02
52	GO:0003747: translation release factor activity	1.21E-02
53	GO:0004674: protein serine/threonine kinase activity	1.40E-02
54	GO:0004673: protein histidine kinase activity	1.52E-02
55	GO:0004805: trehalose-phosphatase activity	1.52E-02
56	GO:0052689: carboxylic ester hydrolase activity	1.53E-02
57	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.60E-02
58	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.66E-02
59	GO:0003691: double-stranded telomeric DNA binding	1.68E-02
60	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.69E-02
61	GO:0004722: protein serine/threonine phosphatase activity	1.98E-02
62	GO:0003725: double-stranded RNA binding	2.03E-02
63	GO:0000155: phosphorelay sensor kinase activity	2.03E-02
64	GO:0004672: protein kinase activity	2.04E-02
65	GO:0016301: kinase activity	2.13E-02
66	GO:0008146: sulfotransferase activity	2.40E-02
67	GO:0003712: transcription cofactor activity	2.40E-02
68	GO:0003723: RNA binding	2.48E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.59E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.59E-02
71	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.59E-02
72	GO:0043621: protein self-association	2.59E-02
73	GO:0009055: electron carrier activity	2.62E-02
74	GO:0051536: iron-sulfur cluster binding	2.79E-02
75	GO:0031418: L-ascorbic acid binding	2.79E-02
76	GO:0043424: protein histidine kinase binding	2.99E-02
77	GO:0033612: receptor serine/threonine kinase binding	3.20E-02
78	GO:0003964: RNA-directed DNA polymerase activity	3.20E-02
79	GO:0010333: terpene synthase activity	3.20E-02
80	GO:0003690: double-stranded DNA binding	3.34E-02
81	GO:0016298: lipase activity	3.34E-02
82	GO:0016874: ligase activity	4.31E-02
83	GO:0004842: ubiquitin-protein transferase activity	4.39E-02
84	GO:0005199: structural constituent of cell wall	4.55E-02
85	GO:0001085: RNA polymerase II transcription factor binding	4.55E-02
86	GO:0015035: protein disulfide oxidoreductase activity	4.71E-02
87	GO:0016853: isomerase activity	4.79E-02
88	GO:0008026: ATP-dependent helicase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009986: cell surface	5.29E-04
2	GO:0005884: actin filament	1.52E-03
3	GO:0030139: endocytic vesicle	1.79E-03
4	GO:0032585: multivesicular body membrane	2.60E-03
5	GO:0032432: actin filament bundle	2.60E-03
6	GO:0009654: photosystem II oxygen evolving complex	3.43E-03
7	GO:0009544: chloroplast ATP synthase complex	3.50E-03
8	GO:0019898: extrinsic component of membrane	7.16E-03
9	GO:0000783: nuclear telomere cap complex	1.06E-02
10	GO:0010494: cytoplasmic stress granule	1.21E-02
11	GO:0005578: proteinaceous extracellular matrix	2.03E-02
12	GO:0030095: chloroplast photosystem II	2.21E-02
13	GO:0005875: microtubule associated complex	2.59E-02
14	GO:0046658: anchored component of plasma membrane	2.90E-02
15	GO:0005886: plasma membrane	2.92E-02
16	GO:0015629: actin cytoskeleton	3.64E-02
17	GO:0005834: heterotrimeric G-protein complex	4.06E-02
18	GO:0005871: kinesin complex	4.08E-02