co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G67690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0007050: cell cycle arrest	6.54E-05
7	GO:0042255: ribosome assembly	8.48E-05
8	GO:0006353: DNA-templated transcription, termination	8.48E-05
9	GO:0010070: zygote asymmetric cell division	1.30E-04
10	GO:0045786: negative regulation of cell cycle	1.30E-04
11	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.30E-04
12	GO:0043039: tRNA aminoacylation	2.99E-04
13	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.99E-04
14	GO:0006650: glycerophospholipid metabolic process	2.99E-04
15	GO:2000071: regulation of defense response by callose deposition	2.99E-04
16	GO:0009887: animal organ morphogenesis	3.27E-04
17	GO:0006863: purine nucleobase transport	4.10E-04
18	GO:0009658: chloroplast organization	4.63E-04
19	GO:0042780: tRNA 3'-end processing	4.92E-04
20	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.92E-04
21	GO:0034090: maintenance of meiotic sister chromatid cohesion	4.92E-04
22	GO:0046168: glycerol-3-phosphate catabolic process	4.92E-04
23	GO:0009686: gibberellin biosynthetic process	6.54E-04
24	GO:0006424: glutamyl-tRNA aminoacylation	7.04E-04
25	GO:0045017: glycerolipid biosynthetic process	7.04E-04
26	GO:0007276: gamete generation	7.04E-04
27	GO:0006072: glycerol-3-phosphate metabolic process	7.04E-04
28	GO:0009956: radial pattern formation	9.34E-04
29	GO:0042793: transcription from plastid promoter	1.45E-03
30	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.45E-03
31	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.04E-03
32	GO:0006811: ion transport	2.21E-03
33	GO:0010492: maintenance of shoot apical meristem identity	2.36E-03
34	GO:0048564: photosystem I assembly	2.36E-03
35	GO:0045292: mRNA cis splicing, via spliceosome	2.36E-03
36	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.36E-03
37	GO:0007186: G-protein coupled receptor signaling pathway	2.69E-03
38	GO:0000373: Group II intron splicing	3.04E-03
39	GO:0048589: developmental growth	3.04E-03
40	GO:1900865: chloroplast RNA modification	3.41E-03
41	GO:0010192: mucilage biosynthetic process	3.79E-03
42	GO:0006782: protoporphyrinogen IX biosynthetic process	3.79E-03
43	GO:0009089: lysine biosynthetic process via diaminopimelate	4.18E-03
44	GO:0016485: protein processing	4.18E-03
45	GO:0009682: induced systemic resistance	4.18E-03
46	GO:0016567: protein ubiquitination	4.29E-03
47	GO:0010152: pollen maturation	4.58E-03
48	GO:0005983: starch catabolic process	4.58E-03
49	GO:0010540: basipetal auxin transport	5.44E-03
50	GO:0006302: double-strand break repair	5.44E-03
51	GO:0009933: meristem structural organization	5.44E-03
52	GO:0009740: gibberellic acid mediated signaling pathway	5.86E-03
53	GO:0009825: multidimensional cell growth	5.88E-03
54	GO:0080188: RNA-directed DNA methylation	5.88E-03
55	GO:0009833: plant-type primary cell wall biogenesis	6.34E-03
56	GO:0006874: cellular calcium ion homeostasis	7.30E-03
57	GO:0051321: meiotic cell cycle	7.79E-03
58	GO:0006306: DNA methylation	7.79E-03
59	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.30E-03
60	GO:0007005: mitochondrion organization	8.30E-03
61	GO:0042127: regulation of cell proliferation	9.35E-03
62	GO:0048443: stamen development	9.35E-03
63	GO:0000271: polysaccharide biosynthetic process	1.04E-02
64	GO:0010118: stomatal movement	1.04E-02
65	GO:0009958: positive gravitropism	1.10E-02
66	GO:0009451: RNA modification	1.10E-02
67	GO:0045489: pectin biosynthetic process	1.10E-02
68	GO:0010305: leaf vascular tissue pattern formation	1.10E-02
69	GO:0008654: phospholipid biosynthetic process	1.22E-02
70	GO:0009416: response to light stimulus	1.26E-02
71	GO:0002229: defense response to oomycetes	1.28E-02
72	GO:0008380: RNA splicing	1.29E-02
73	GO:0010583: response to cyclopentenone	1.34E-02
74	GO:0031047: gene silencing by RNA	1.34E-02
75	GO:0032502: developmental process	1.34E-02
76	GO:0009639: response to red or far red light	1.46E-02
77	GO:0019760: glucosinolate metabolic process	1.46E-02
78	GO:0000910: cytokinesis	1.59E-02
79	GO:0016126: sterol biosynthetic process	1.66E-02
80	GO:0006974: cellular response to DNA damage stimulus	1.79E-02
81	GO:0009627: systemic acquired resistance	1.79E-02
82	GO:0015995: chlorophyll biosynthetic process	1.86E-02
83	GO:0048481: plant ovule development	2.00E-02
84	GO:0030244: cellulose biosynthetic process	2.00E-02
85	GO:0009832: plant-type cell wall biogenesis	2.07E-02
86	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.14E-02
87	GO:0009867: jasmonic acid mediated signaling pathway	2.37E-02
88	GO:0016051: carbohydrate biosynthetic process	2.37E-02
89	GO:0006468: protein phosphorylation	2.59E-02
90	GO:0010114: response to red light	2.84E-02
91	GO:0009926: auxin polar transport	2.84E-02
92	GO:0009965: leaf morphogenesis	3.08E-02
93	GO:0006397: mRNA processing	3.19E-02
94	GO:0031347: regulation of defense response	3.25E-02
95	GO:0006364: rRNA processing	3.51E-02
96	GO:0048367: shoot system development	4.04E-02
97	GO:0048316: seed development	4.04E-02
98	GO:0009620: response to fungus	4.23E-02
99	GO:0006508: proteolysis	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0004818: glutamate-tRNA ligase activity	1.30E-04
4	GO:0008836: diaminopimelate decarboxylase activity	1.30E-04
5	GO:0019156: isoamylase activity	2.99E-04
6	GO:0004109: coproporphyrinogen oxidase activity	2.99E-04
7	GO:0008805: carbon-monoxide oxygenase activity	2.99E-04
8	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	4.92E-04
9	GO:0016707: gibberellin 3-beta-dioxygenase activity	4.92E-04
10	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.92E-04
11	GO:0005345: purine nucleobase transmembrane transporter activity	5.01E-04
12	GO:0003727: single-stranded RNA binding	7.09E-04
13	GO:0010011: auxin binding	9.34E-04
14	GO:0004930: G-protein coupled receptor activity	9.34E-04
15	GO:0030332: cyclin binding	1.45E-03
16	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.45E-03
17	GO:0004556: alpha-amylase activity	1.45E-03
18	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.45E-03
19	GO:0003690: double-stranded DNA binding	4.53E-03
20	GO:0000049: tRNA binding	4.58E-03
21	GO:0004970: ionotropic glutamate receptor activity	5.88E-03
22	GO:0005217: intracellular ligand-gated ion channel activity	5.88E-03
23	GO:0004519: endonuclease activity	6.76E-03
24	GO:0008134: transcription factor binding	6.81E-03
25	GO:0019843: rRNA binding	7.79E-03
26	GO:0008408: 3'-5' exonuclease activity	7.79E-03
27	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.30E-03
28	GO:0016301: kinase activity	8.71E-03
29	GO:0016760: cellulose synthase (UDP-forming) activity	8.82E-03
30	GO:0004518: nuclease activity	1.34E-02
31	GO:0016759: cellulose synthase activity	1.46E-02
32	GO:0008237: metallopeptidase activity	1.53E-02
33	GO:0004222: metalloendopeptidase activity	2.15E-02
34	GO:0030145: manganese ion binding	2.22E-02
35	GO:0003697: single-stranded DNA binding	2.37E-02
36	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.52E-02
37	GO:0042803: protein homodimerization activity	2.60E-02
38	GO:0004871: signal transducer activity	2.60E-02
39	GO:0051287: NAD binding	3.25E-02
40	GO:0008234: cysteine-type peptidase activity	3.77E-02
41	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.04E-02
42	GO:0046983: protein dimerization activity	4.37E-02
43	GO:0003779: actin binding	4.41E-02
44	GO:0004386: helicase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.30E-04
3	GO:0009507: chloroplast	1.72E-04
4	GO:0030870: Mre11 complex	2.99E-04
5	GO:0009569: chloroplast starch grain	2.99E-04
6	GO:0009331: glycerol-3-phosphate dehydrogenase complex	7.04E-04
7	GO:0009570: chloroplast stroma	7.93E-04
8	GO:0000795: synaptonemal complex	1.18E-03
9	GO:0042644: chloroplast nucleoid	3.04E-03
10	GO:0005739: mitochondrion	5.54E-03
11	GO:0005875: microtubule associated complex	6.34E-03
12	GO:0000419: DNA-directed RNA polymerase V complex	6.34E-03
13	GO:0009536: plastid	1.09E-02
14	GO:0016592: mediator complex	1.34E-02
15	GO:0000785: chromatin	1.34E-02
16	GO:0009707: chloroplast outer membrane	2.00E-02
17	GO:0015934: large ribosomal subunit	2.22E-02
18	GO:0090406: pollen tube	2.84E-02
19	GO:0016021: integral component of membrane	3.74E-02