Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G66940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0030155: regulation of cell adhesion0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
13GO:0015979: photosynthesis7.45E-09
14GO:0009773: photosynthetic electron transport in photosystem I1.99E-08
15GO:1901259: chloroplast rRNA processing5.29E-06
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.58E-05
17GO:0009765: photosynthesis, light harvesting8.11E-05
18GO:0006021: inositol biosynthetic process8.11E-05
19GO:0018298: protein-chromophore linkage1.56E-04
20GO:0009228: thiamine biosynthetic process1.82E-04
21GO:0009768: photosynthesis, light harvesting in photosystem I1.89E-04
22GO:0009854: oxidative photosynthetic carbon pathway2.46E-04
23GO:0006810: transport2.57E-04
24GO:0010114: response to red light3.57E-04
25GO:0031998: regulation of fatty acid beta-oxidation3.63E-04
26GO:0034337: RNA folding3.63E-04
27GO:0005991: trehalose metabolic process3.63E-04
28GO:0000476: maturation of 4.5S rRNA3.63E-04
29GO:0009443: pyridoxal 5'-phosphate salvage3.63E-04
30GO:0000967: rRNA 5'-end processing3.63E-04
31GO:0046467: membrane lipid biosynthetic process3.63E-04
32GO:0015671: oxygen transport3.63E-04
33GO:0043953: protein transport by the Tat complex3.63E-04
34GO:0019544: arginine catabolic process to glutamate3.63E-04
35GO:0006659: phosphatidylserine biosynthetic process3.63E-04
36GO:0042371: vitamin K biosynthetic process3.63E-04
37GO:0065002: intracellular protein transmembrane transport3.63E-04
38GO:0080093: regulation of photorespiration3.63E-04
39GO:0009657: plastid organization4.91E-04
40GO:0032544: plastid translation4.91E-04
41GO:0009791: post-embryonic development5.10E-04
42GO:0019252: starch biosynthetic process5.10E-04
43GO:0006098: pentose-phosphate shunt5.89E-04
44GO:0009409: response to cold6.58E-04
45GO:0005982: starch metabolic process6.94E-04
46GO:0034470: ncRNA processing7.89E-04
47GO:0051645: Golgi localization7.89E-04
48GO:0010541: acropetal auxin transport7.89E-04
49GO:0060151: peroxisome localization7.89E-04
50GO:0071457: cellular response to ozone7.89E-04
51GO:1904143: positive regulation of carotenoid biosynthetic process7.89E-04
52GO:0019684: photosynthesis, light reaction9.32E-04
53GO:0043085: positive regulation of catalytic activity9.32E-04
54GO:0016024: CDP-diacylglycerol biosynthetic process1.06E-03
55GO:0015995: chlorophyll biosynthetic process1.09E-03
56GO:0006094: gluconeogenesis1.20E-03
57GO:0009767: photosynthetic electron transport chain1.20E-03
58GO:0005977: glycogen metabolic process1.28E-03
59GO:0048281: inflorescence morphogenesis1.28E-03
60GO:0006954: inflammatory response1.28E-03
61GO:0090391: granum assembly1.28E-03
62GO:0009405: pathogenesis1.28E-03
63GO:0090436: leaf pavement cell development1.28E-03
64GO:0051646: mitochondrion localization1.28E-03
65GO:0010160: formation of animal organ boundary1.28E-03
66GO:0048467: gynoecium development1.36E-03
67GO:0010207: photosystem II assembly1.36E-03
68GO:0010143: cutin biosynthetic process1.36E-03
69GO:0010218: response to far red light1.40E-03
70GO:0009637: response to blue light1.67E-03
71GO:0009853: photorespiration1.67E-03
72GO:0071484: cellular response to light intensity1.84E-03
73GO:0009152: purine ribonucleotide biosynthetic process1.84E-03
74GO:0046653: tetrahydrofolate metabolic process1.84E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch1.84E-03
76GO:0043481: anthocyanin accumulation in tissues in response to UV light1.84E-03
77GO:0010731: protein glutathionylation1.84E-03
78GO:0010148: transpiration1.84E-03
79GO:0007017: microtubule-based process2.07E-03
80GO:0071486: cellular response to high light intensity2.47E-03
81GO:0010107: potassium ion import2.47E-03
82GO:0006109: regulation of carbohydrate metabolic process2.47E-03
83GO:0015994: chlorophyll metabolic process2.47E-03
84GO:0006546: glycine catabolic process2.47E-03
85GO:0010021: amylopectin biosynthetic process2.47E-03
86GO:0005975: carbohydrate metabolic process2.58E-03
87GO:0006465: signal peptide processing3.16E-03
88GO:0071493: cellular response to UV-B3.16E-03
89GO:0098719: sodium ion import across plasma membrane3.16E-03
90GO:0006564: L-serine biosynthetic process3.16E-03
91GO:0010236: plastoquinone biosynthetic process3.16E-03
92GO:0043097: pyrimidine nucleoside salvage3.16E-03
93GO:0006097: glyoxylate cycle3.16E-03
94GO:0009958: positive gravitropism3.72E-03
95GO:0042549: photosystem II stabilization3.91E-03
96GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.91E-03
97GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.91E-03
98GO:0006655: phosphatidylglycerol biosynthetic process3.91E-03
99GO:0060918: auxin transport3.91E-03
100GO:1902456: regulation of stomatal opening3.91E-03
101GO:0006206: pyrimidine nucleobase metabolic process3.91E-03
102GO:0000741: karyogamy3.91E-03
103GO:0050665: hydrogen peroxide biosynthetic process3.91E-03
104GO:0046855: inositol phosphate dephosphorylation3.91E-03
105GO:0048367: shoot system development4.35E-03
106GO:0055114: oxidation-reduction process4.38E-03
107GO:0009955: adaxial/abaxial pattern specification4.71E-03
108GO:0010189: vitamin E biosynthetic process4.71E-03
109GO:0010019: chloroplast-nucleus signaling pathway4.71E-03
110GO:0032502: developmental process4.91E-03
111GO:0009772: photosynthetic electron transport in photosystem II5.56E-03
112GO:0070370: cellular heat acclimation5.56E-03
113GO:0009645: response to low light intensity stimulus5.56E-03
114GO:0009769: photosynthesis, light harvesting in photosystem II5.56E-03
115GO:0010103: stomatal complex morphogenesis5.56E-03
116GO:0080167: response to karrikin6.05E-03
117GO:0016559: peroxisome fission6.46E-03
118GO:0007155: cell adhesion6.46E-03
119GO:0010078: maintenance of root meristem identity6.46E-03
120GO:0070413: trehalose metabolism in response to stress6.46E-03
121GO:0055075: potassium ion homeostasis6.46E-03
122GO:0010027: thylakoid membrane organization6.65E-03
123GO:0009735: response to cytokinin6.68E-03
124GO:0017004: cytochrome complex assembly7.41E-03
125GO:0019430: removal of superoxide radicals7.41E-03
126GO:0001558: regulation of cell growth7.41E-03
127GO:0071482: cellular response to light stimulus7.41E-03
128GO:0010204: defense response signaling pathway, resistance gene-independent7.41E-03
129GO:0043562: cellular response to nitrogen levels7.41E-03
130GO:0009058: biosynthetic process7.53E-03
131GO:0009416: response to light stimulus7.81E-03
132GO:0009821: alkaloid biosynthetic process8.41E-03
133GO:0090333: regulation of stomatal closure8.41E-03
134GO:0019432: triglyceride biosynthetic process8.41E-03
135GO:0051453: regulation of intracellular pH9.46E-03
136GO:0048527: lateral root development1.01E-02
137GO:0006949: syncytium formation1.05E-02
138GO:0016042: lipid catabolic process1.05E-02
139GO:0034599: cellular response to oxidative stress1.16E-02
140GO:0009684: indoleacetic acid biosynthetic process1.17E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.17E-02
142GO:0006415: translational termination1.17E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.17E-02
144GO:0008361: regulation of cell size1.29E-02
145GO:0006790: sulfur compound metabolic process1.29E-02
146GO:0030048: actin filament-based movement1.41E-02
147GO:0010588: cotyledon vascular tissue pattern formation1.41E-02
148GO:0006108: malate metabolic process1.41E-02
149GO:0010540: basipetal auxin transport1.53E-02
150GO:0010020: chloroplast fission1.53E-02
151GO:0019253: reductive pentose-phosphate cycle1.53E-02
152GO:0019853: L-ascorbic acid biosynthetic process1.66E-02
153GO:0046854: phosphatidylinositol phosphorylation1.66E-02
154GO:0009664: plant-type cell wall organization1.80E-02
155GO:0009658: chloroplast organization1.85E-02
156GO:0005992: trehalose biosynthetic process1.93E-02
157GO:0009944: polarity specification of adaxial/abaxial axis1.93E-02
158GO:0051603: proteolysis involved in cellular protein catabolic process2.00E-02
159GO:0051302: regulation of cell division2.07E-02
160GO:0006418: tRNA aminoacylation for protein translation2.07E-02
161GO:0019915: lipid storage2.22E-02
162GO:0061077: chaperone-mediated protein folding2.22E-02
163GO:0009269: response to desiccation2.22E-02
164GO:0016114: terpenoid biosynthetic process2.22E-02
165GO:0006096: glycolytic process2.28E-02
166GO:0019748: secondary metabolic process2.37E-02
167GO:0030245: cellulose catabolic process2.37E-02
168GO:0016226: iron-sulfur cluster assembly2.37E-02
169GO:0009686: gibberellin biosynthetic process2.52E-02
170GO:0001944: vasculature development2.52E-02
171GO:0042742: defense response to bacterium2.62E-02
172GO:0048443: stamen development2.67E-02
173GO:0016117: carotenoid biosynthetic process2.83E-02
174GO:0009742: brassinosteroid mediated signaling pathway2.91E-02
175GO:0010118: stomatal movement2.99E-02
176GO:0042631: cellular response to water deprivation2.99E-02
177GO:0080022: primary root development2.99E-02
178GO:0042335: cuticle development2.99E-02
179GO:0010087: phloem or xylem histogenesis2.99E-02
180GO:0009741: response to brassinosteroid3.16E-02
181GO:0010268: brassinosteroid homeostasis3.16E-02
182GO:0006885: regulation of pH3.16E-02
183GO:0006520: cellular amino acid metabolic process3.16E-02
184GO:0071472: cellular response to salt stress3.16E-02
185GO:0010154: fruit development3.16E-02
186GO:0006662: glycerol ether metabolic process3.16E-02
187GO:0010197: polar nucleus fusion3.16E-02
188GO:0010182: sugar mediated signaling pathway3.16E-02
189GO:0009646: response to absence of light3.32E-02
190GO:0015986: ATP synthesis coupled proton transport3.32E-02
191GO:0006814: sodium ion transport3.32E-02
192GO:0009851: auxin biosynthetic process3.49E-02
193GO:0048825: cotyledon development3.49E-02
194GO:0008654: phospholipid biosynthetic process3.49E-02
195GO:0055085: transmembrane transport3.66E-02
196GO:0016132: brassinosteroid biosynthetic process3.67E-02
197GO:0071554: cell wall organization or biogenesis3.67E-02
198GO:1901657: glycosyl compound metabolic process4.02E-02
199GO:0010090: trichome morphogenesis4.02E-02
200GO:0009567: double fertilization forming a zygote and endosperm4.20E-02
201GO:0016125: sterol metabolic process4.20E-02
202GO:0009639: response to red or far red light4.20E-02
203GO:0009828: plant-type cell wall loosening4.20E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0008974: phosphoribulokinase activity0.00E+00
5GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0016168: chlorophyll binding6.79E-06
11GO:0019899: enzyme binding8.43E-06
12GO:0019843: rRNA binding3.12E-05
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.11E-05
14GO:0009011: starch synthase activity8.11E-05
15GO:0043495: protein anchor8.11E-05
16GO:0031409: pigment binding1.41E-04
17GO:0004332: fructose-bisphosphate aldolase activity1.82E-04
18GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.82E-04
19GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.46E-04
20GO:0010347: L-galactose-1-phosphate phosphatase activity3.63E-04
21GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.63E-04
22GO:0005344: oxygen transporter activity3.63E-04
23GO:0046906: tetrapyrrole binding3.63E-04
24GO:0051777: ent-kaurenoate oxidase activity3.63E-04
25GO:0004856: xylulokinase activity3.63E-04
26GO:0009374: biotin binding3.63E-04
27GO:0005080: protein kinase C binding3.63E-04
28GO:0004328: formamidase activity3.63E-04
29GO:0042802: identical protein binding6.99E-04
30GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.89E-04
31GO:0009977: proton motive force dependent protein transmembrane transporter activity7.89E-04
32GO:0004617: phosphoglycerate dehydrogenase activity7.89E-04
33GO:0004047: aminomethyltransferase activity7.89E-04
34GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.89E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity7.89E-04
36GO:0033201: alpha-1,4-glucan synthase activity7.89E-04
37GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.89E-04
38GO:0019156: isoamylase activity7.89E-04
39GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.89E-04
40GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.89E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity7.89E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity7.89E-04
43GO:0004512: inositol-3-phosphate synthase activity7.89E-04
44GO:0047746: chlorophyllase activity7.89E-04
45GO:0016788: hydrolase activity, acting on ester bonds1.02E-03
46GO:0008864: formyltetrahydrofolate deformylase activity1.28E-03
47GO:0090729: toxin activity1.28E-03
48GO:0004373: glycogen (starch) synthase activity1.28E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.28E-03
50GO:0002161: aminoacyl-tRNA editing activity1.28E-03
51GO:0004751: ribose-5-phosphate isomerase activity1.28E-03
52GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.28E-03
53GO:0070402: NADPH binding1.28E-03
54GO:0008266: poly(U) RNA binding1.36E-03
55GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.84E-03
56GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.84E-03
57GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.84E-03
58GO:0016149: translation release factor activity, codon specific1.84E-03
59GO:0003883: CTP synthase activity1.84E-03
60GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.84E-03
61GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.84E-03
62GO:0016851: magnesium chelatase activity1.84E-03
63GO:0005528: FK506 binding1.87E-03
64GO:0004185: serine-type carboxypeptidase activity2.30E-03
65GO:0008453: alanine-glyoxylate transaminase activity2.47E-03
66GO:0004045: aminoacyl-tRNA hydrolase activity2.47E-03
67GO:0045430: chalcone isomerase activity2.47E-03
68GO:0019199: transmembrane receptor protein kinase activity2.47E-03
69GO:0042277: peptide binding2.47E-03
70GO:0008891: glycolate oxidase activity2.47E-03
71GO:0022891: substrate-specific transmembrane transporter activity2.71E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.80E-03
73GO:0003989: acetyl-CoA carboxylase activity3.16E-03
74GO:0016846: carbon-sulfur lyase activity3.16E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor3.16E-03
76GO:2001070: starch binding3.91E-03
77GO:0004556: alpha-amylase activity3.91E-03
78GO:0004784: superoxide dismutase activity3.91E-03
79GO:0042578: phosphoric ester hydrolase activity3.91E-03
80GO:0015081: sodium ion transmembrane transporter activity3.91E-03
81GO:0016615: malate dehydrogenase activity3.91E-03
82GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.91E-03
83GO:0048038: quinone binding4.60E-03
84GO:0004849: uridine kinase activity4.71E-03
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.71E-03
86GO:0030060: L-malate dehydrogenase activity4.71E-03
87GO:0016491: oxidoreductase activity5.42E-03
88GO:0016791: phosphatase activity5.57E-03
89GO:0005200: structural constituent of cytoskeleton5.92E-03
90GO:0005525: GTP binding6.02E-03
91GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
92GO:0052689: carboxylic ester hydrolase activity7.04E-03
93GO:0008135: translation factor activity, RNA binding7.41E-03
94GO:0003747: translation release factor activity8.41E-03
95GO:0016844: strictosidine synthase activity9.46E-03
96GO:0008047: enzyme activator activity1.05E-02
97GO:0003924: GTPase activity1.09E-02
98GO:0003993: acid phosphatase activity1.16E-02
99GO:0047372: acylglycerol lipase activity1.17E-02
100GO:0015386: potassium:proton antiporter activity1.17E-02
101GO:0008378: galactosyltransferase activity1.29E-02
102GO:0000049: tRNA binding1.29E-02
103GO:0003725: double-stranded RNA binding1.41E-02
104GO:0004565: beta-galactosidase activity1.41E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity1.41E-02
106GO:0010329: auxin efflux transmembrane transporter activity1.41E-02
107GO:0003774: motor activity1.53E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.53E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding1.55E-02
110GO:0051287: NAD binding1.73E-02
111GO:0051536: iron-sulfur cluster binding1.93E-02
112GO:0004857: enzyme inhibitor activity1.93E-02
113GO:0030570: pectate lyase activity2.52E-02
114GO:0008810: cellulase activity2.52E-02
115GO:0003727: single-stranded RNA binding2.67E-02
116GO:0004812: aminoacyl-tRNA ligase activity2.83E-02
117GO:0047134: protein-disulfide reductase activity2.83E-02
118GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.16E-02
119GO:0004791: thioredoxin-disulfide reductase activity3.32E-02
120GO:0010181: FMN binding3.32E-02
121GO:0016787: hydrolase activity3.82E-02
122GO:0015385: sodium:proton antiporter activity4.02E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.02E-02
124GO:0009055: electron carrier activity4.29E-02
125GO:0008483: transaminase activity4.39E-02
126GO:0016722: oxidoreductase activity, oxidizing metal ions4.39E-02
127GO:0016413: O-acetyltransferase activity4.57E-02
128GO:0016597: amino acid binding4.57E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
4GO:0009507: chloroplast1.92E-38
5GO:0009535: chloroplast thylakoid membrane1.02E-23
6GO:0009570: chloroplast stroma5.69E-20
7GO:0009579: thylakoid1.39E-17
8GO:0009941: chloroplast envelope2.63E-14
9GO:0009534: chloroplast thylakoid6.06E-14
10GO:0009543: chloroplast thylakoid lumen6.89E-13
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.43E-09
12GO:0031977: thylakoid lumen8.71E-08
13GO:0009654: photosystem II oxygen evolving complex2.30E-07
14GO:0010287: plastoglobule2.70E-05
15GO:0019898: extrinsic component of membrane4.19E-05
16GO:0009523: photosystem II4.19E-05
17GO:0048046: apoplast5.20E-05
18GO:0010319: stromule7.79E-05
19GO:0030095: chloroplast photosystem II1.00E-04
20GO:0030076: light-harvesting complex1.20E-04
21GO:0042651: thylakoid membrane1.89E-04
22GO:0009547: plastid ribosome3.63E-04
23GO:0031361: integral component of thylakoid membrane3.63E-04
24GO:0005787: signal peptidase complex3.63E-04
25GO:0009522: photosystem I4.66E-04
26GO:0043036: starch grain7.89E-04
27GO:0033281: TAT protein transport complex1.28E-03
28GO:0010007: magnesium chelatase complex1.28E-03
29GO:0009317: acetyl-CoA carboxylase complex1.28E-03
30GO:0015630: microtubule cytoskeleton1.84E-03
31GO:0009517: PSII associated light-harvesting complex II2.47E-03
32GO:0005777: peroxisome2.97E-03
33GO:0005840: ribosome3.30E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.91E-03
35GO:0005773: vacuole3.97E-03
36GO:0005618: cell wall4.23E-03
37GO:0009501: amyloplast6.46E-03
38GO:0009539: photosystem II reaction center7.41E-03
39GO:0005763: mitochondrial small ribosomal subunit8.41E-03
40GO:0045298: tubulin complex8.41E-03
41GO:0016459: myosin complex1.05E-02
42GO:0000311: plastid large ribosomal subunit1.29E-02
43GO:0032040: small-subunit processome1.29E-02
44GO:0009536: plastid1.34E-02
45GO:0031969: chloroplast membrane2.43E-02
46GO:0030529: intracellular ribonucleoprotein complex4.76E-02
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Gene type



Gene DE type