Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G66890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0001778: plasma membrane repair0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
8GO:0080127: fruit septum development0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0031222: arabinan catabolic process0.00E+00
12GO:0061157: mRNA destabilization0.00E+00
13GO:0043392: negative regulation of DNA binding0.00E+00
14GO:0009733: response to auxin7.71E-10
15GO:0040008: regulation of growth6.07E-07
16GO:0009734: auxin-activated signaling pathway1.68E-06
17GO:0046620: regulation of organ growth2.49E-06
18GO:1900033: negative regulation of trichome patterning2.78E-05
19GO:1900865: chloroplast RNA modification2.07E-04
20GO:0048629: trichome patterning3.04E-04
21GO:0016554: cytidine to uridine editing6.28E-04
22GO:0000025: maltose catabolic process8.15E-04
23GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.15E-04
24GO:0005980: glycogen catabolic process8.15E-04
25GO:0030198: extracellular matrix organization8.15E-04
26GO:0046520: sphingoid biosynthetic process8.15E-04
27GO:0010480: microsporocyte differentiation8.15E-04
28GO:0042759: long-chain fatty acid biosynthetic process8.15E-04
29GO:0042371: vitamin K biosynthetic process8.15E-04
30GO:1902458: positive regulation of stomatal opening8.15E-04
31GO:0015904: tetracycline transport8.15E-04
32GO:0042372: phylloquinone biosynthetic process8.30E-04
33GO:0030488: tRNA methylation8.30E-04
34GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.24E-03
35GO:2000070: regulation of response to water deprivation1.31E-03
36GO:0010497: plasmodesmata-mediated intercellular transport1.60E-03
37GO:0006741: NADP biosynthetic process1.77E-03
38GO:0080005: photosystem stoichiometry adjustment1.77E-03
39GO:1900871: chloroplast mRNA modification1.77E-03
40GO:0018026: peptidyl-lysine monomethylation1.77E-03
41GO:0071497: cellular response to freezing1.77E-03
42GO:0006423: cysteinyl-tRNA aminoacylation1.77E-03
43GO:0080009: mRNA methylation1.77E-03
44GO:0009786: regulation of asymmetric cell division1.77E-03
45GO:0046740: transport of virus in host, cell to cell1.77E-03
46GO:0031648: protein destabilization1.77E-03
47GO:1903426: regulation of reactive oxygen species biosynthetic process1.77E-03
48GO:0006568: tryptophan metabolic process1.77E-03
49GO:2000123: positive regulation of stomatal complex development1.77E-03
50GO:0048507: meristem development1.93E-03
51GO:0000373: Group II intron splicing1.93E-03
52GO:0009741: response to brassinosteroid1.99E-03
53GO:0009638: phototropism2.29E-03
54GO:0009926: auxin polar transport2.34E-03
55GO:0009641: shade avoidance2.68E-03
56GO:0032502: developmental process2.84E-03
57GO:1902448: positive regulation of shade avoidance2.93E-03
58GO:0071398: cellular response to fatty acid2.93E-03
59GO:0019674: NAD metabolic process2.93E-03
60GO:0045910: negative regulation of DNA recombination2.93E-03
61GO:0090506: axillary shoot meristem initiation2.93E-03
62GO:0033591: response to L-ascorbic acid2.93E-03
63GO:0009416: response to light stimulus3.44E-03
64GO:0005983: starch catabolic process3.56E-03
65GO:0010628: positive regulation of gene expression4.06E-03
66GO:0010102: lateral root morphogenesis4.06E-03
67GO:0009725: response to hormone4.06E-03
68GO:0009767: photosynthetic electron transport chain4.06E-03
69GO:0010027: thylakoid membrane organization4.20E-03
70GO:0010306: rhamnogalacturonan II biosynthetic process4.26E-03
71GO:0006612: protein targeting to membrane4.26E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.26E-03
73GO:0046739: transport of virus in multicellular host4.26E-03
74GO:1990019: protein storage vacuole organization4.26E-03
75GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis4.26E-03
76GO:0019363: pyridine nucleotide biosynthetic process4.26E-03
77GO:0010371: regulation of gibberellin biosynthetic process4.26E-03
78GO:0051513: regulation of monopolar cell growth4.26E-03
79GO:0007231: osmosensory signaling pathway4.26E-03
80GO:0009102: biotin biosynthetic process4.26E-03
81GO:0032456: endocytic recycling4.26E-03
82GO:0010207: photosystem II assembly4.58E-03
83GO:0045892: negative regulation of transcription, DNA-templated5.73E-03
84GO:0033500: carbohydrate homeostasis5.77E-03
85GO:2000038: regulation of stomatal complex development5.77E-03
86GO:0009755: hormone-mediated signaling pathway5.77E-03
87GO:1901141: regulation of lignin biosynthetic process5.77E-03
88GO:0010109: regulation of photosynthesis5.77E-03
89GO:0042274: ribosomal small subunit biogenesis5.77E-03
90GO:0009765: photosynthesis, light harvesting5.77E-03
91GO:0080110: sporopollenin biosynthetic process7.43E-03
92GO:0010375: stomatal complex patterning7.43E-03
93GO:0016131: brassinosteroid metabolic process7.43E-03
94GO:0016120: carotene biosynthetic process7.43E-03
95GO:0010236: plastoquinone biosynthetic process7.43E-03
96GO:0045038: protein import into chloroplast thylakoid membrane7.43E-03
97GO:0045487: gibberellin catabolic process7.43E-03
98GO:0048497: maintenance of floral organ identity7.43E-03
99GO:0016123: xanthophyll biosynthetic process7.43E-03
100GO:0010438: cellular response to sulfur starvation7.43E-03
101GO:0006351: transcription, DNA-templated7.73E-03
102GO:0016042: lipid catabolic process7.92E-03
103GO:0009658: chloroplast organization8.67E-03
104GO:0009913: epidermal cell differentiation9.24E-03
105GO:0010358: leaf shaping9.24E-03
106GO:1902456: regulation of stomatal opening9.24E-03
107GO:0042793: transcription from plastid promoter9.24E-03
108GO:0033365: protein localization to organelle9.24E-03
109GO:0003006: developmental process involved in reproduction9.24E-03
110GO:0018258: protein O-linked glycosylation via hydroxyproline9.24E-03
111GO:0010405: arabinogalactan protein metabolic process9.24E-03
112GO:0042549: photosystem II stabilization9.24E-03
113GO:0009959: negative gravitropism9.24E-03
114GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.32E-03
115GO:0009686: gibberellin biosynthetic process9.32E-03
116GO:0006631: fatty acid metabolic process1.00E-02
117GO:0009640: photomorphogenesis1.11E-02
118GO:0009612: response to mechanical stimulus1.12E-02
119GO:0009082: branched-chain amino acid biosynthetic process1.12E-02
120GO:0006458: 'de novo' protein folding1.12E-02
121GO:0042026: protein refolding1.12E-02
122GO:0048509: regulation of meristem development1.12E-02
123GO:0009099: valine biosynthetic process1.12E-02
124GO:0031930: mitochondria-nucleus signaling pathway1.12E-02
125GO:0080086: stamen filament development1.12E-02
126GO:0071333: cellular response to glucose stimulus1.12E-02
127GO:0010305: leaf vascular tissue pattern formation1.29E-02
128GO:0010182: sugar mediated signaling pathway1.29E-02
129GO:0010268: brassinosteroid homeostasis1.29E-02
130GO:0009793: embryo development ending in seed dormancy1.31E-02
131GO:0030497: fatty acid elongation1.33E-02
132GO:0010098: suspensor development1.33E-02
133GO:0048437: floral organ development1.33E-02
134GO:0030307: positive regulation of cell growth1.33E-02
135GO:0015693: magnesium ion transport1.33E-02
136GO:0010161: red light signaling pathway1.33E-02
137GO:0006955: immune response1.33E-02
138GO:0009772: photosynthetic electron transport in photosystem II1.33E-02
139GO:0048544: recognition of pollen1.39E-02
140GO:0006402: mRNA catabolic process1.55E-02
141GO:0010439: regulation of glucosinolate biosynthetic process1.55E-02
142GO:0009819: drought recovery1.55E-02
143GO:0009690: cytokinin metabolic process1.55E-02
144GO:0006605: protein targeting1.55E-02
145GO:0009704: de-etiolation1.55E-02
146GO:0000105: histidine biosynthetic process1.55E-02
147GO:0010583: response to cyclopentenone1.71E-02
148GO:0016032: viral process1.71E-02
149GO:0007186: G-protein coupled receptor signaling pathway1.78E-02
150GO:0009097: isoleucine biosynthetic process1.78E-02
151GO:0010100: negative regulation of photomorphogenesis1.78E-02
152GO:0010099: regulation of photomorphogenesis1.78E-02
153GO:0015996: chlorophyll catabolic process1.78E-02
154GO:0007275: multicellular organism development1.82E-02
155GO:0010090: trichome morphogenesis1.82E-02
156GO:1901657: glycosyl compound metabolic process1.82E-02
157GO:0009828: plant-type cell wall loosening1.94E-02
158GO:0051865: protein autoubiquitination2.03E-02
159GO:0006783: heme biosynthetic process2.03E-02
160GO:0000902: cell morphogenesis2.03E-02
161GO:0006779: porphyrin-containing compound biosynthetic process2.29E-02
162GO:0009098: leucine biosynthetic process2.29E-02
163GO:0031425: chloroplast RNA processing2.29E-02
164GO:0043067: regulation of programmed cell death2.29E-02
165GO:0009299: mRNA transcription2.55E-02
166GO:0009870: defense response signaling pathway, resistance gene-dependent2.55E-02
167GO:0006782: protoporphyrinogen IX biosynthetic process2.55E-02
168GO:0048829: root cap development2.55E-02
169GO:0006298: mismatch repair2.55E-02
170GO:0016441: posttranscriptional gene silencing2.55E-02
171GO:0006949: syncytium formation2.55E-02
172GO:0010629: negative regulation of gene expression2.55E-02
173GO:0009826: unidimensional cell growth2.67E-02
174GO:0015995: chlorophyll biosynthetic process2.73E-02
175GO:0048573: photoperiodism, flowering2.73E-02
176GO:0009742: brassinosteroid mediated signaling pathway2.75E-02
177GO:0006816: calcium ion transport2.83E-02
178GO:0009773: photosynthetic electron transport in photosystem I2.83E-02
179GO:0009073: aromatic amino acid family biosynthetic process2.83E-02
180GO:0043085: positive regulation of catalytic activity2.83E-02
181GO:0009682: induced systemic resistance2.83E-02
182GO:0048229: gametophyte development2.83E-02
183GO:0012501: programmed cell death3.12E-02
184GO:0010105: negative regulation of ethylene-activated signaling pathway3.12E-02
185GO:0045037: protein import into chloroplast stroma3.12E-02
186GO:0010582: floral meristem determinacy3.12E-02
187GO:0010588: cotyledon vascular tissue pattern formation3.42E-02
188GO:0030048: actin filament-based movement3.42E-02
189GO:2000012: regulation of auxin polar transport3.42E-02
190GO:0009785: blue light signaling pathway3.42E-02
191GO:0006006: glucose metabolic process3.42E-02
192GO:0009691: cytokinin biosynthetic process3.42E-02
193GO:2000028: regulation of photoperiodism, flowering3.42E-02
194GO:0010075: regulation of meristem growth3.42E-02
195GO:0006865: amino acid transport3.67E-02
196GO:0048467: gynoecium development3.72E-02
197GO:0010020: chloroplast fission3.72E-02
198GO:0010223: secondary shoot formation3.72E-02
199GO:0009266: response to temperature stimulus3.72E-02
200GO:0009934: regulation of meristem structural organization3.72E-02
201GO:0009867: jasmonic acid mediated signaling pathway3.84E-02
202GO:0090351: seedling development4.04E-02
203GO:0010030: positive regulation of seed germination4.04E-02
204GO:0070588: calcium ion transmembrane transport4.04E-02
205GO:0009790: embryo development4.09E-02
206GO:0000162: tryptophan biosynthetic process4.36E-02
207GO:0010025: wax biosynthetic process4.36E-02
208GO:0006839: mitochondrial transport4.37E-02
209GO:0006355: regulation of transcription, DNA-templated4.58E-02
210GO:0080147: root hair cell development4.69E-02
211GO:0051017: actin filament bundle assembly4.69E-02
212GO:0010187: negative regulation of seed germination4.69E-02
213GO:0005992: trehalose biosynthetic process4.69E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0015267: channel activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
9GO:0005201: extracellular matrix structural constituent0.00E+00
10GO:0004076: biotin synthase activity0.00E+00
11GO:0001872: (1->3)-beta-D-glucan binding1.82E-04
12GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.83E-04
13GO:0008184: glycogen phosphorylase activity8.15E-04
14GO:0042834: peptidoglycan binding8.15E-04
15GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.15E-04
16GO:0004134: 4-alpha-glucanotransferase activity8.15E-04
17GO:0050308: sugar-phosphatase activity8.15E-04
18GO:0004645: phosphorylase activity8.15E-04
19GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.15E-04
20GO:0019203: carbohydrate phosphatase activity8.15E-04
21GO:0008395: steroid hydroxylase activity8.15E-04
22GO:0052381: tRNA dimethylallyltransferase activity8.15E-04
23GO:0010313: phytochrome binding8.15E-04
24GO:0042736: NADH kinase activity8.15E-04
25GO:0010012: steroid 22-alpha hydroxylase activity8.15E-04
26GO:0000170: sphingosine hydroxylase activity8.15E-04
27GO:0050139: nicotinate-N-glucosyltransferase activity8.15E-04
28GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity8.15E-04
29GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity8.15E-04
30GO:0005227: calcium activated cation channel activity8.15E-04
31GO:0004425: indole-3-glycerol-phosphate synthase activity8.15E-04
32GO:0008805: carbon-monoxide oxygenase activity1.77E-03
33GO:0042284: sphingolipid delta-4 desaturase activity1.77E-03
34GO:0008493: tetracycline transporter activity1.77E-03
35GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.77E-03
36GO:1901981: phosphatidylinositol phosphate binding1.77E-03
37GO:0017118: lipoyltransferase activity1.77E-03
38GO:0045543: gibberellin 2-beta-dioxygenase activity1.77E-03
39GO:0043425: bHLH transcription factor binding1.77E-03
40GO:0004817: cysteine-tRNA ligase activity1.77E-03
41GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.77E-03
42GO:0005504: fatty acid binding2.93E-03
43GO:0016805: dipeptidase activity2.93E-03
44GO:0015462: ATPase-coupled protein transmembrane transporter activity2.93E-03
45GO:0004180: carboxypeptidase activity2.93E-03
46GO:0004519: endonuclease activity3.29E-03
47GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity4.26E-03
48GO:0052656: L-isoleucine transaminase activity4.26E-03
49GO:0052654: L-leucine transaminase activity4.26E-03
50GO:0052655: L-valine transaminase activity4.26E-03
51GO:0045430: chalcone isomerase activity5.77E-03
52GO:0004084: branched-chain-amino-acid transaminase activity5.77E-03
53GO:0019199: transmembrane receptor protein kinase activity5.77E-03
54GO:0046556: alpha-L-arabinofuranosidase activity5.77E-03
55GO:0004659: prenyltransferase activity5.77E-03
56GO:0016279: protein-lysine N-methyltransferase activity5.77E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.77E-03
58GO:0005528: FK506 binding6.39E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity7.43E-03
60GO:0033612: receptor serine/threonine kinase binding7.78E-03
61GO:0016788: hydrolase activity, acting on ester bonds8.96E-03
62GO:0016208: AMP binding9.24E-03
63GO:2001070: starch binding9.24E-03
64GO:0030983: mismatched DNA binding9.24E-03
65GO:0080030: methyl indole-3-acetate esterase activity9.24E-03
66GO:1990714: hydroxyproline O-galactosyltransferase activity9.24E-03
67GO:0004709: MAP kinase kinase kinase activity9.24E-03
68GO:0003700: transcription factor activity, sequence-specific DNA binding1.04E-02
69GO:0003723: RNA binding1.06E-02
70GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.10E-02
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.12E-02
72GO:0016832: aldehyde-lyase activity1.12E-02
73GO:0003886: DNA (cytosine-5-)-methyltransferase activity1.12E-02
74GO:0043621: protein self-association1.23E-02
75GO:0001085: RNA polymerase II transcription factor binding1.29E-02
76GO:0052689: carboxylic ester hydrolase activity1.50E-02
77GO:0016298: lipase activity1.70E-02
78GO:0003951: NAD+ kinase activity1.78E-02
79GO:0008173: RNA methyltransferase activity1.78E-02
80GO:0003724: RNA helicase activity1.78E-02
81GO:0044212: transcription regulatory region DNA binding1.79E-02
82GO:0004871: signal transducer activity1.87E-02
83GO:0008138: protein tyrosine/serine/threonine phosphatase activity2.03E-02
84GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.03E-02
85GO:0004805: trehalose-phosphatase activity2.55E-02
86GO:0008047: enzyme activator activity2.55E-02
87GO:0015035: protein disulfide oxidoreductase activity2.65E-02
88GO:0102483: scopolin beta-glucosidase activity2.73E-02
89GO:0030247: polysaccharide binding2.73E-02
90GO:0009055: electron carrier activity2.77E-02
91GO:0044183: protein binding involved in protein folding2.83E-02
92GO:0046983: protein dimerization activity3.39E-02
93GO:0003725: double-stranded RNA binding3.42E-02
94GO:0015266: protein channel activity3.42E-02
95GO:0015095: magnesium ion transmembrane transporter activity3.42E-02
96GO:0005262: calcium channel activity3.42E-02
97GO:0003677: DNA binding3.49E-02
98GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.50E-02
99GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.50E-02
100GO:0008266: poly(U) RNA binding3.72E-02
101GO:0003774: motor activity3.72E-02
102GO:0003712: transcription cofactor activity4.04E-02
103GO:0008146: sulfotransferase activity4.04E-02
104GO:0004190: aspartic-type endopeptidase activity4.04E-02
105GO:0008422: beta-glucosidase activity4.19E-02
106GO:0051536: iron-sulfur cluster binding4.69E-02
107GO:0031418: L-ascorbic acid binding4.69E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009507: chloroplast6.49E-08
3GO:0009570: chloroplast stroma7.14E-04
4GO:0009941: chloroplast envelope7.49E-04
5GO:0032541: cortical endoplasmic reticulum8.15E-04
6GO:0009654: photosystem II oxygen evolving complex9.32E-04
7GO:0031357: integral component of chloroplast inner membrane1.77E-03
8GO:0000427: plastid-encoded plastid RNA polymerase complex1.77E-03
9GO:0010494: cytoplasmic stress granule1.93E-03
10GO:0019898: extrinsic component of membrane2.39E-03
11GO:0009528: plastid inner membrane2.93E-03
12GO:0019897: extrinsic component of plasma membrane2.93E-03
13GO:0008287: protein serine/threonine phosphatase complex2.93E-03
14GO:0030139: endocytic vesicle2.93E-03
15GO:0032585: multivesicular body membrane4.26E-03
16GO:0009534: chloroplast thylakoid5.38E-03
17GO:0009898: cytoplasmic side of plasma membrane5.77E-03
18GO:0009544: chloroplast ATP synthase complex5.77E-03
19GO:0009527: plastid outer membrane5.77E-03
20GO:0046658: anchored component of plasma membrane6.59E-03
21GO:0015629: actin cytoskeleton9.32E-03
22GO:0009986: cell surface1.33E-02
23GO:0009501: amyloplast1.55E-02
24GO:0010319: stromule2.06E-02
25GO:0030529: intracellular ribonucleoprotein complex2.32E-02
26GO:0031225: anchored component of membrane2.43E-02
27GO:0016459: myosin complex2.55E-02
28GO:0005667: transcription factor complex2.59E-02
29GO:0009707: chloroplast outer membrane3.03E-02
30GO:0009543: chloroplast thylakoid lumen3.38E-02
31GO:0009508: plastid chromosome3.42E-02
32GO:0005578: proteinaceous extracellular matrix3.42E-02
33GO:0030095: chloroplast photosystem II3.72E-02
34GO:0031969: chloroplast membrane3.87E-02
35GO:0005886: plasma membrane4.02E-02
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Gene type



Gene DE type