co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0090400: stress-induced premature senescence	0.00E+00
3	GO:0048034: heme O biosynthetic process	0.00E+00
4	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
5	GO:1904250: positive regulation of age-related resistance	0.00E+00
6	GO:0010398: xylogalacturonan metabolic process	0.00E+00
7	GO:0016102: diterpenoid biosynthetic process	0.00E+00
8	GO:0046686: response to cadmium ion	5.66E-06
9	GO:0009636: response to toxic substance	6.92E-05
10	GO:0071669: plant-type cell wall organization or biogenesis	1.03E-04
11	GO:0019567: arabinose biosynthetic process	1.73E-04
12	GO:0019478: D-amino acid catabolic process	1.73E-04
13	GO:0042964: thioredoxin reduction	1.73E-04
14	GO:0046246: terpene biosynthetic process	1.73E-04
15	GO:0006680: glucosylceramide catabolic process	1.73E-04
16	GO:0055114: oxidation-reduction process	1.96E-04
17	GO:0009407: toxin catabolic process	3.66E-04
18	GO:0071422: succinate transmembrane transport	3.92E-04
19	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.92E-04
20	GO:0015709: thiosulfate transport	3.92E-04
21	GO:0055046: microgametogenesis	4.32E-04
22	GO:0042542: response to hydrogen peroxide	5.75E-04
23	GO:0010476: gibberellin mediated signaling pathway	6.40E-04
24	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.40E-04
25	GO:0010272: response to silver ion	6.40E-04
26	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	6.40E-04
27	GO:0006556: S-adenosylmethionine biosynthetic process	6.40E-04
28	GO:0006874: cellular calcium ion homeostasis	7.39E-04
29	GO:0016998: cell wall macromolecule catabolic process	8.10E-04
30	GO:0070301: cellular response to hydrogen peroxide	9.13E-04
31	GO:0015729: oxaloacetate transport	9.13E-04
32	GO:0080024: indolebutyric acid metabolic process	9.13E-04
33	GO:0045227: capsule polysaccharide biosynthetic process	1.21E-03
34	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.21E-03
35	GO:1902584: positive regulation of response to water deprivation	1.21E-03
36	GO:0033358: UDP-L-arabinose biosynthetic process	1.21E-03
37	GO:0033356: UDP-L-arabinose metabolic process	1.21E-03
38	GO:1901002: positive regulation of response to salt stress	1.21E-03
39	GO:0015867: ATP transport	1.21E-03
40	GO:0010188: response to microbial phytotoxin	1.21E-03
41	GO:0009651: response to salt stress	1.28E-03
42	GO:0006623: protein targeting to vacuole	1.50E-03
43	GO:0045927: positive regulation of growth	1.54E-03
44	GO:0071423: malate transmembrane transport	1.54E-03
45	GO:0000304: response to singlet oxygen	1.54E-03
46	GO:0006564: L-serine biosynthetic process	1.54E-03
47	GO:0006891: intra-Golgi vesicle-mediated transport	1.60E-03
48	GO:0015866: ADP transport	1.89E-03
49	GO:0006555: methionine metabolic process	1.89E-03
50	GO:0035435: phosphate ion transmembrane transport	1.89E-03
51	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.89E-03
52	GO:0019509: L-methionine salvage from methylthioadenosine	2.27E-03
53	GO:0030643: cellular phosphate ion homeostasis	2.27E-03
54	GO:0034389: lipid particle organization	2.27E-03
55	GO:0009082: branched-chain amino acid biosynthetic process	2.27E-03
56	GO:0009099: valine biosynthetic process	2.27E-03
57	GO:0080113: regulation of seed growth	2.27E-03
58	GO:0048444: floral organ morphogenesis	2.27E-03
59	GO:0080027: response to herbivore	2.67E-03
60	GO:0080186: developmental vegetative growth	2.67E-03
61	GO:0008272: sulfate transport	2.67E-03
62	GO:0050829: defense response to Gram-negative bacterium	2.67E-03
63	GO:1900057: positive regulation of leaf senescence	2.67E-03
64	GO:1902074: response to salt	2.67E-03
65	GO:0010150: leaf senescence	2.71E-03
66	GO:0006102: isocitrate metabolic process	3.09E-03
67	GO:0043068: positive regulation of programmed cell death	3.09E-03
68	GO:0006605: protein targeting	3.09E-03
69	GO:0010043: response to zinc ion	3.45E-03
70	GO:0006002: fructose 6-phosphate metabolic process	3.54E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	3.54E-03
72	GO:0010497: plasmodesmata-mediated intercellular transport	3.54E-03
73	GO:0019430: removal of superoxide radicals	3.54E-03
74	GO:0009097: isoleucine biosynthetic process	3.54E-03
75	GO:0006099: tricarboxylic acid cycle	3.95E-03
76	GO:0006783: heme biosynthetic process	4.00E-03
77	GO:0010112: regulation of systemic acquired resistance	4.00E-03
78	GO:0006754: ATP biosynthetic process	4.00E-03
79	GO:0009056: catabolic process	4.00E-03
80	GO:0006839: mitochondrial transport	4.30E-03
81	GO:0009098: leucine biosynthetic process	4.49E-03
82	GO:2000280: regulation of root development	4.49E-03
83	GO:0006032: chitin catabolic process	4.99E-03
84	GO:0006415: translational termination	5.52E-03
85	GO:0000272: polysaccharide catabolic process	5.52E-03
86	GO:0071365: cellular response to auxin stimulus	6.06E-03
87	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.06E-03
88	GO:0006807: nitrogen compound metabolic process	6.61E-03
89	GO:0010053: root epidermal cell differentiation	7.79E-03
90	GO:0009225: nucleotide-sugar metabolic process	7.79E-03
91	GO:0090351: seedling development	7.79E-03
92	GO:0000162: tryptophan biosynthetic process	8.41E-03
93	GO:0045333: cellular respiration	9.03E-03
94	GO:0051302: regulation of cell division	9.69E-03
95	GO:0019915: lipid storage	1.03E-02
96	GO:0016114: terpenoid biosynthetic process	1.03E-02
97	GO:0006730: one-carbon metabolic process	1.10E-02
98	GO:0030433: ubiquitin-dependent ERAD pathway	1.10E-02
99	GO:0006012: galactose metabolic process	1.17E-02
100	GO:0009693: ethylene biosynthetic process	1.17E-02
101	GO:0009561: megagametogenesis	1.24E-02
102	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
103	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
104	GO:0042631: cellular response to water deprivation	1.39E-02
105	GO:0045489: pectin biosynthetic process	1.47E-02
106	GO:0006662: glycerol ether metabolic process	1.47E-02
107	GO:0006979: response to oxidative stress	1.50E-02
108	GO:0048544: recognition of pollen	1.54E-02
109	GO:0010193: response to ozone	1.70E-02
110	GO:0006635: fatty acid beta-oxidation	1.70E-02
111	GO:0016032: viral process	1.78E-02
112	GO:0071281: cellular response to iron ion	1.87E-02
113	GO:0009617: response to bacterium	1.93E-02
114	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
115	GO:0019760: glucosinolate metabolic process	1.95E-02
116	GO:0006464: cellular protein modification process	1.95E-02
117	GO:0051607: defense response to virus	2.12E-02
118	GO:0015031: protein transport	2.12E-02
119	GO:0009611: response to wounding	2.16E-02
120	GO:0009615: response to virus	2.21E-02
121	GO:0010029: regulation of seed germination	2.30E-02
122	GO:0009816: defense response to bacterium, incompatible interaction	2.30E-02
123	GO:0009409: response to cold	2.33E-02
124	GO:0009627: systemic acquired resistance	2.39E-02
125	GO:0006888: ER to Golgi vesicle-mediated transport	2.48E-02
126	GO:0016311: dephosphorylation	2.58E-02
127	GO:0016049: cell growth	2.58E-02
128	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
129	GO:0030244: cellulose biosynthetic process	2.67E-02
130	GO:0009832: plant-type cell wall biogenesis	2.77E-02
131	GO:0048527: lateral root development	2.96E-02
132	GO:0045087: innate immune response	3.16E-02
133	GO:0034599: cellular response to oxidative stress	3.27E-02
134	GO:0044550: secondary metabolite biosynthetic process	3.38E-02
135	GO:0045454: cell redox homeostasis	3.72E-02
136	GO:0051707: response to other organism	3.79E-02
137	GO:0000209: protein polyubiquitination	3.90E-02
138	GO:0009965: leaf morphogenesis	4.12E-02
139	GO:0031347: regulation of defense response	4.34E-02
140	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.34E-02
141	GO:0009846: pollen germination	4.45E-02
142	GO:0009751: response to salicylic acid	4.51E-02
143	GO:0009809: lignin biosynthetic process	4.68E-02
144	GO:0009736: cytokinin-activated signaling pathway	4.68E-02
145	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
146	GO:0009414: response to water deprivation	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0016229: steroid dehydrogenase activity	0.00E+00
2	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0070401: NADP+ binding	0.00E+00
5	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
6	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
7	GO:0008495: protoheme IX farnesyltransferase activity	0.00E+00
8	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
9	GO:0016504: peptidase activator activity	0.00E+00
10	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
11	GO:0043295: glutathione binding	1.03E-04
12	GO:0004033: aldo-keto reductase (NADP) activity	1.32E-04
13	GO:0010179: IAA-Ala conjugate hydrolase activity	1.73E-04
14	GO:2001227: quercitrin binding	1.73E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.73E-04
16	GO:0004348: glucosylceramidase activity	1.73E-04
17	GO:2001147: camalexin binding	1.73E-04
18	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.73E-04
19	GO:0010297: heteropolysaccharide binding	3.92E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	3.92E-04
21	GO:0052691: UDP-arabinopyranose mutase activity	3.92E-04
22	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.92E-04
23	GO:0015117: thiosulfate transmembrane transporter activity	3.92E-04
24	GO:1901677: phosphate transmembrane transporter activity	3.92E-04
25	GO:0010331: gibberellin binding	3.92E-04
26	GO:0005217: intracellular ligand-gated ion channel activity	5.46E-04
27	GO:0004970: ionotropic glutamate receptor activity	5.46E-04
28	GO:0004364: glutathione transferase activity	5.75E-04
29	GO:0004478: methionine adenosyltransferase activity	6.40E-04
30	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
31	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.40E-04
32	GO:0015141: succinate transmembrane transporter activity	6.40E-04
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.40E-04
34	GO:0004601: peroxidase activity	8.57E-04
35	GO:0017077: oxidative phosphorylation uncoupler activity	9.13E-04
36	GO:0052655: L-valine transaminase activity	9.13E-04
37	GO:0004416: hydroxyacylglutathione hydrolase activity	9.13E-04
38	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.13E-04
39	GO:0015131: oxaloacetate transmembrane transporter activity	9.13E-04
40	GO:0008106: alcohol dehydrogenase (NADP+) activity	9.13E-04
41	GO:0016149: translation release factor activity, codon specific	9.13E-04
42	GO:0010178: IAA-amino acid conjugate hydrolase activity	9.13E-04
43	GO:0016656: monodehydroascorbate reductase (NADH) activity	9.13E-04
44	GO:0052656: L-isoleucine transaminase activity	9.13E-04
45	GO:0052654: L-leucine transaminase activity	9.13E-04
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.21E-03
47	GO:0004084: branched-chain-amino-acid transaminase activity	1.21E-03
48	GO:0070628: proteasome binding	1.21E-03
49	GO:0016866: intramolecular transferase activity	1.21E-03
50	GO:0004930: G-protein coupled receptor activity	1.21E-03
51	GO:0004659: prenyltransferase activity	1.21E-03
52	GO:0050373: UDP-arabinose 4-epimerase activity	1.21E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	1.40E-03
54	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.54E-03
55	GO:0018685: alkane 1-monooxygenase activity	1.54E-03
56	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.89E-03
57	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.89E-03
58	GO:0035252: UDP-xylosyltransferase activity	1.89E-03
59	GO:0008237: metallopeptidase activity	2.05E-03
60	GO:0015217: ADP transmembrane transporter activity	2.27E-03
61	GO:0003978: UDP-glucose 4-epimerase activity	2.27E-03
62	GO:0005347: ATP transmembrane transporter activity	2.27E-03
63	GO:0003872: 6-phosphofructokinase activity	2.67E-03
64	GO:0015140: malate transmembrane transporter activity	2.67E-03
65	GO:0052747: sinapyl alcohol dehydrogenase activity	3.09E-03
66	GO:0004311: farnesyltranstransferase activity	3.09E-03
67	GO:0004630: phospholipase D activity	3.54E-03
68	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.54E-03
69	GO:0005506: iron ion binding	3.95E-03
70	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.00E-03
71	GO:0003747: translation release factor activity	4.00E-03
72	GO:0045309: protein phosphorylated amino acid binding	4.49E-03
73	GO:0004568: chitinase activity	4.99E-03
74	GO:0019904: protein domain specific binding	5.52E-03
75	GO:0015116: sulfate transmembrane transporter activity	6.06E-03
76	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.06E-03
77	GO:0031625: ubiquitin protein ligase binding	7.25E-03
78	GO:0008061: chitin binding	7.79E-03
79	GO:0019825: oxygen binding	8.70E-03
80	GO:0020037: heme binding	9.00E-03
81	GO:0015035: protein disulfide oxidoreductase activity	9.61E-03
82	GO:0010333: terpene synthase activity	1.03E-02
83	GO:0047134: protein-disulfide reductase activity	1.32E-02
84	GO:0001085: RNA polymerase II transcription factor binding	1.47E-02
85	GO:0015297: antiporter activity	1.54E-02
86	GO:0010181: FMN binding	1.54E-02
87	GO:0016887: ATPase activity	1.78E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
89	GO:0016791: phosphatase activity	1.95E-02
90	GO:0046872: metal ion binding	1.98E-02
91	GO:0016597: amino acid binding	2.12E-02
92	GO:0000287: magnesium ion binding	2.46E-02
93	GO:0030145: manganese ion binding	2.96E-02
94	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.96E-02
95	GO:0030246: carbohydrate binding	3.05E-02
96	GO:0003746: translation elongation factor activity	3.16E-02
97	GO:0003993: acid phosphatase activity	3.27E-02
98	GO:0061630: ubiquitin protein ligase activity	3.27E-02
99	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.37E-02
100	GO:0004722: protein serine/threonine phosphatase activity	4.07E-02
101	GO:0005198: structural molecule activity	4.12E-02
102	GO:0051287: NAD binding	4.34E-02
103	GO:0005509: calcium ion binding	4.57E-02
104	GO:0003924: GTPase activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0017119: Golgi transport complex	7.54E-06
2	GO:0005794: Golgi apparatus	4.35E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.73E-04
4	GO:0005886: plasma membrane	4.42E-04
5	GO:0005829: cytosol	6.22E-04
6	GO:0005945: 6-phosphofructokinase complex	1.54E-03
7	GO:0009506: plasmodesma	2.32E-03
8	GO:0005788: endoplasmic reticulum lumen	2.43E-03
9	GO:0009986: cell surface	2.67E-03
10	GO:0005783: endoplasmic reticulum	2.71E-03
11	GO:0005779: integral component of peroxisomal membrane	3.54E-03
12	GO:0005811: lipid particle	3.54E-03
13	GO:0030665: clathrin-coated vesicle membrane	4.49E-03
14	GO:0016021: integral component of membrane	5.98E-03
15	GO:0000139: Golgi membrane	6.90E-03
16	GO:0005789: endoplasmic reticulum membrane	8.51E-03
17	GO:0005743: mitochondrial inner membrane	9.28E-03
18	GO:0005839: proteasome core complex	1.03E-02
19	GO:0016020: membrane	1.57E-02
20	GO:0031965: nuclear membrane	1.62E-02
21	GO:0005737: cytoplasm	1.66E-02
22	GO:0016592: mediator complex	1.78E-02
23	GO:0071944: cell periphery	1.87E-02
24	GO:0032580: Golgi cisterna membrane	1.95E-02
25	GO:0005667: transcription factor complex	2.39E-02
26	GO:0009707: chloroplast outer membrane	2.67E-02
27	GO:0005774: vacuolar membrane	3.43E-02
28	GO:0031902: late endosome membrane	3.58E-02
29	GO:0005802: trans-Golgi network	3.79E-02
30	GO:0009570: chloroplast stroma	4.07E-02
31	GO:0005618: cell wall	4.27E-02
32	GO:0005768: endosome	4.43E-02
33	GO:0005635: nuclear envelope	4.91E-02