co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015843: methylammonium transport	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
9	GO:0010207: photosystem II assembly	2.86E-05
10	GO:0034599: cellular response to oxidative stress	5.94E-05
11	GO:0009854: oxidative photosynthetic carbon pathway	1.02E-04
12	GO:0019252: starch biosynthetic process	1.71E-04
13	GO:0019544: arginine catabolic process to glutamate	2.06E-04
14	GO:0000481: maturation of 5S rRNA	2.06E-04
15	GO:0042371: vitamin K biosynthetic process	2.06E-04
16	GO:0065002: intracellular protein transmembrane transport	2.06E-04
17	GO:0071461: cellular response to redox state	2.06E-04
18	GO:0080093: regulation of photorespiration	2.06E-04
19	GO:0031998: regulation of fatty acid beta-oxidation	2.06E-04
20	GO:0034337: RNA folding	2.06E-04
21	GO:0000476: maturation of 4.5S rRNA	2.06E-04
22	GO:0009443: pyridoxal 5'-phosphate salvage	2.06E-04
23	GO:0000967: rRNA 5'-end processing	2.06E-04
24	GO:0043953: protein transport by the Tat complex	2.06E-04
25	GO:0046467: membrane lipid biosynthetic process	2.06E-04
26	GO:0051775: response to redox state	2.06E-04
27	GO:0071277: cellular response to calcium ion	2.06E-04
28	GO:0071482: cellular response to light stimulus	2.15E-04
29	GO:0006098: pentose-phosphate shunt	2.61E-04
30	GO:0005982: starch metabolic process	3.11E-04
31	GO:0005975: carbohydrate metabolic process	3.43E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	4.23E-04
33	GO:0043085: positive regulation of catalytic activity	4.23E-04
34	GO:0015979: photosynthesis	4.24E-04
35	GO:0034470: ncRNA processing	4.62E-04
36	GO:0051645: Golgi localization	4.62E-04
37	GO:0080005: photosystem stoichiometry adjustment	4.62E-04
38	GO:0071457: cellular response to ozone	4.62E-04
39	GO:0010541: acropetal auxin transport	4.62E-04
40	GO:0060151: peroxisome localization	4.62E-04
41	GO:0000256: allantoin catabolic process	4.62E-04
42	GO:0016024: CDP-diacylglycerol biosynthetic process	4.85E-04
43	GO:0010218: response to far red light	5.03E-04
44	GO:0006108: malate metabolic process	5.50E-04
45	GO:0006094: gluconeogenesis	5.50E-04
46	GO:0009637: response to blue light	6.01E-04
47	GO:0010143: cutin biosynthetic process	6.19E-04
48	GO:0005977: glycogen metabolic process	7.52E-04
49	GO:0051646: mitochondrion localization	7.52E-04
50	GO:0090391: granum assembly	7.52E-04
51	GO:0010160: formation of animal organ boundary	7.52E-04
52	GO:0010136: ureide catabolic process	7.52E-04
53	GO:0090436: leaf pavement cell development	7.52E-04
54	GO:0006636: unsaturated fatty acid biosynthetic process	7.70E-04
55	GO:0009768: photosynthesis, light harvesting in photosystem I	9.35E-04
56	GO:2001141: regulation of RNA biosynthetic process	1.07E-03
57	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.07E-03
58	GO:0071484: cellular response to light intensity	1.07E-03
59	GO:0006107: oxaloacetate metabolic process	1.07E-03
60	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.07E-03
61	GO:0006145: purine nucleobase catabolic process	1.07E-03
62	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.07E-03
63	GO:0010731: protein glutathionylation	1.07E-03
64	GO:0015696: ammonium transport	1.07E-03
65	GO:0019748: secondary metabolic process	1.12E-03
66	GO:0010021: amylopectin biosynthetic process	1.43E-03
67	GO:0010037: response to carbon dioxide	1.43E-03
68	GO:0015976: carbon utilization	1.43E-03
69	GO:0071486: cellular response to high light intensity	1.43E-03
70	GO:0009765: photosynthesis, light harvesting	1.43E-03
71	GO:0006109: regulation of carbohydrate metabolic process	1.43E-03
72	GO:0072488: ammonium transmembrane transport	1.43E-03
73	GO:2000122: negative regulation of stomatal complex development	1.43E-03
74	GO:0006546: glycine catabolic process	1.43E-03
75	GO:0006734: NADH metabolic process	1.43E-03
76	GO:0006662: glycerol ether metabolic process	1.66E-03
77	GO:0000278: mitotic cell cycle	1.81E-03
78	GO:0006097: glyoxylate cycle	1.81E-03
79	GO:0006465: signal peptide processing	1.81E-03
80	GO:0071493: cellular response to UV-B	1.81E-03
81	GO:0006564: L-serine biosynthetic process	1.81E-03
82	GO:0009791: post-embryonic development	1.91E-03
83	GO:0050665: hydrogen peroxide biosynthetic process	2.24E-03
84	GO:0042549: photosystem II stabilization	2.24E-03
85	GO:0006655: phosphatidylglycerol biosynthetic process	2.24E-03
86	GO:0060918: auxin transport	2.24E-03
87	GO:0010189: vitamin E biosynthetic process	2.69E-03
88	GO:0071333: cellular response to glucose stimulus	2.69E-03
89	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.69E-03
90	GO:0055114: oxidation-reduction process	2.84E-03
91	GO:1900056: negative regulation of leaf senescence	3.16E-03
92	GO:0009769: photosynthesis, light harvesting in photosystem II	3.16E-03
93	GO:0009645: response to low light intensity stimulus	3.16E-03
94	GO:0032508: DNA duplex unwinding	3.67E-03
95	GO:0050821: protein stabilization	3.67E-03
96	GO:0016559: peroxisome fission	3.67E-03
97	GO:0009642: response to light intensity	3.67E-03
98	GO:0070413: trehalose metabolism in response to stress	3.67E-03
99	GO:0009704: de-etiolation	3.67E-03
100	GO:0006810: transport	3.77E-03
101	GO:0018298: protein-chromophore linkage	3.82E-03
102	GO:0019430: removal of superoxide radicals	4.20E-03
103	GO:0009657: plastid organization	4.20E-03
104	GO:0010204: defense response signaling pathway, resistance gene-independent	4.20E-03
105	GO:0009821: alkaloid biosynthetic process	4.75E-03
106	GO:0090333: regulation of stomatal closure	4.75E-03
107	GO:0009853: photorespiration	4.84E-03
108	GO:0006099: tricarboxylic acid cycle	5.05E-03
109	GO:0010380: regulation of chlorophyll biosynthetic process	5.32E-03
110	GO:0007346: regulation of mitotic cell cycle	5.32E-03
111	GO:0010114: response to red light	6.23E-03
112	GO:0009658: chloroplast organization	6.48E-03
113	GO:0072593: reactive oxygen species metabolic process	6.55E-03
114	GO:0006352: DNA-templated transcription, initiation	6.55E-03
115	GO:0008361: regulation of cell size	7.20E-03
116	GO:0009767: photosynthetic electron transport chain	7.87E-03
117	GO:0030048: actin filament-based movement	7.87E-03
118	GO:0010540: basipetal auxin transport	8.56E-03
119	GO:0048467: gynoecium development	8.56E-03
120	GO:0010020: chloroplast fission	8.56E-03
121	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.89E-03
122	GO:0006096: glycolytic process	9.94E-03
123	GO:0042023: DNA endoreduplication	1.00E-02
124	GO:0009833: plant-type primary cell wall biogenesis	1.00E-02
125	GO:0010025: wax biosynthetic process	1.00E-02
126	GO:0016310: phosphorylation	1.03E-02
127	GO:0005992: trehalose biosynthetic process	1.08E-02
128	GO:0009624: response to nematode	1.20E-02
129	GO:0003333: amino acid transmembrane transport	1.23E-02
130	GO:0009269: response to desiccation	1.23E-02
131	GO:0030433: ubiquitin-dependent ERAD pathway	1.32E-02
132	GO:0071215: cellular response to abscisic acid stimulus	1.40E-02
133	GO:0009306: protein secretion	1.48E-02
134	GO:0048443: stamen development	1.48E-02
135	GO:0042631: cellular response to water deprivation	1.66E-02
136	GO:0009958: positive gravitropism	1.75E-02
137	GO:0071472: cellular response to salt stress	1.75E-02
138	GO:0006520: cellular amino acid metabolic process	1.75E-02
139	GO:0010154: fruit development	1.75E-02
140	GO:0008654: phospholipid biosynthetic process	1.94E-02
141	GO:0006413: translational initiation	1.94E-02
142	GO:0032502: developmental process	2.13E-02
143	GO:1901657: glycosyl compound metabolic process	2.23E-02
144	GO:0010090: trichome morphogenesis	2.23E-02
145	GO:0009567: double fertilization forming a zygote and endosperm	2.33E-02
146	GO:0009639: response to red or far red light	2.33E-02
147	GO:0010027: thylakoid membrane organization	2.64E-02
148	GO:0042128: nitrate assimilation	2.86E-02
149	GO:0015995: chlorophyll biosynthetic process	2.97E-02
150	GO:0016311: dephosphorylation	3.08E-02
151	GO:0016049: cell growth	3.08E-02
152	GO:0030244: cellulose biosynthetic process	3.19E-02
153	GO:0009910: negative regulation of flower development	3.54E-02
154	GO:0048527: lateral root development	3.54E-02
155	GO:0010119: regulation of stomatal movement	3.54E-02
156	GO:0009631: cold acclimation	3.54E-02
157	GO:0080167: response to karrikin	3.98E-02
158	GO:0046686: response to cadmium ion	4.11E-02
159	GO:0009926: auxin polar transport	4.52E-02
160	GO:0009640: photomorphogenesis	4.52E-02
161	GO:0000209: protein polyubiquitination	4.65E-02
162	GO:0045454: cell redox homeostasis	4.75E-02
163	GO:0009644: response to high light intensity	4.78E-02
164	GO:0009636: response to toxic substance	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0010276: phytol kinase activity	0.00E+00
9	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
10	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
11	GO:0009011: starch synthase activity	1.60E-07
12	GO:0016615: malate dehydrogenase activity	7.36E-05
13	GO:0004332: fructose-bisphosphate aldolase activity	7.36E-05
14	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	7.36E-05
15	GO:0030060: L-malate dehydrogenase activity	1.02E-04
16	GO:0008746: NAD(P)+ transhydrogenase activity	2.06E-04
17	GO:0004328: formamidase activity	2.06E-04
18	GO:0008047: enzyme activator activity	3.65E-04
19	GO:0004103: choline kinase activity	4.62E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.62E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	4.62E-04
22	GO:0004047: aminomethyltransferase activity	4.62E-04
23	GO:0033201: alpha-1,4-glucan synthase activity	4.62E-04
24	GO:0004312: fatty acid synthase activity	4.62E-04
25	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.62E-04
26	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	4.62E-04
27	GO:0019156: isoamylase activity	4.62E-04
28	GO:0004751: ribose-5-phosphate isomerase activity	7.52E-04
29	GO:0070402: NADPH binding	7.52E-04
30	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.52E-04
31	GO:0004373: glycogen (starch) synthase activity	7.52E-04
32	GO:0050734: hydroxycinnamoyltransferase activity	7.52E-04
33	GO:0004848: ureidoglycolate hydrolase activity	7.52E-04
34	GO:0031409: pigment binding	7.70E-04
35	GO:0042802: identical protein binding	9.25E-04
36	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.07E-03
37	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.07E-03
38	GO:0016851: magnesium chelatase activity	1.07E-03
39	GO:0003883: CTP synthase activity	1.07E-03
40	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.07E-03
41	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.07E-03
42	GO:0008891: glycolate oxidase activity	1.43E-03
43	GO:0047134: protein-disulfide reductase activity	1.43E-03
44	GO:0001053: plastid sigma factor activity	1.43E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.43E-03
46	GO:0008453: alanine-glyoxylate transaminase activity	1.43E-03
47	GO:0016987: sigma factor activity	1.43E-03
48	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-03
49	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.24E-03
50	GO:0008519: ammonium transmembrane transporter activity	2.24E-03
51	GO:2001070: starch binding	2.24E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	2.24E-03
53	GO:0004784: superoxide dismutase activity	2.24E-03
54	GO:0004556: alpha-amylase activity	2.24E-03
55	GO:0042578: phosphoric ester hydrolase activity	2.24E-03
56	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.32E-03
57	GO:0016791: phosphatase activity	2.46E-03
58	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.69E-03
59	GO:0016168: chlorophyll binding	3.10E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	3.67E-03
61	GO:0008135: translation factor activity, RNA binding	4.20E-03
62	GO:0003993: acid phosphatase activity	5.05E-03
63	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.28E-03
64	GO:0016844: strictosidine synthase activity	5.32E-03
65	GO:0015174: basic amino acid transmembrane transporter activity	5.32E-03
66	GO:0015020: glucuronosyltransferase activity	5.93E-03
67	GO:0004185: serine-type carboxypeptidase activity	6.23E-03
68	GO:0051287: NAD binding	7.55E-03
69	GO:0004089: carbonate dehydratase activity	7.87E-03
70	GO:0004565: beta-galactosidase activity	7.87E-03
71	GO:0003725: double-stranded RNA binding	7.87E-03
72	GO:0010329: auxin efflux transmembrane transporter activity	7.87E-03
73	GO:0004022: alcohol dehydrogenase (NAD) activity	7.87E-03
74	GO:0003774: motor activity	8.56E-03
75	GO:0008266: poly(U) RNA binding	8.56E-03
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.56E-03
77	GO:0016491: oxidoreductase activity	1.02E-02
78	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.03E-02
79	GO:0004857: enzyme inhibitor activity	1.08E-02
80	GO:0043130: ubiquitin binding	1.08E-02
81	GO:0005528: FK506 binding	1.08E-02
82	GO:0015035: protein disulfide oxidoreductase activity	1.23E-02
83	GO:0004672: protein kinase activity	1.23E-02
84	GO:0016760: cellulose synthase (UDP-forming) activity	1.40E-02
85	GO:0003727: single-stranded RNA binding	1.48E-02
86	GO:0010181: FMN binding	1.84E-02
87	GO:0019901: protein kinase binding	1.94E-02
88	GO:0048038: quinone binding	2.03E-02
89	GO:0016759: cellulose synthase activity	2.33E-02
90	GO:0008483: transaminase activity	2.43E-02
91	GO:0008237: metallopeptidase activity	2.43E-02
92	GO:0016597: amino acid binding	2.54E-02
93	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-02
94	GO:0008270: zinc ion binding	2.93E-02
95	GO:0102483: scopolin beta-glucosidase activity	2.97E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	3.28E-02
97	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.42E-02
98	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.54E-02
99	GO:0003746: translation elongation factor activity	3.78E-02
100	GO:0008422: beta-glucosidase activity	4.02E-02
101	GO:0042393: histone binding	4.15E-02
102	GO:0004364: glutathione transferase activity	4.40E-02
103	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-02
104	GO:0043621: protein self-association	4.78E-02
105	GO:0004871: signal transducer activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	1.54E-25
4	GO:0009570: chloroplast stroma	3.39E-11
5	GO:0009941: chloroplast envelope	8.61E-09
6	GO:0009535: chloroplast thylakoid membrane	3.16E-08
7	GO:0009579: thylakoid	2.44E-06
8	GO:0009543: chloroplast thylakoid lumen	3.07E-06
9	GO:0033281: TAT protein transport complex	7.40E-06
10	GO:0009534: chloroplast thylakoid	2.16E-05
11	GO:0010287: plastoglobule	3.90E-05
12	GO:0031977: thylakoid lumen	7.57E-05
13	GO:0009522: photosystem I	1.55E-04
14	GO:0009523: photosystem II	1.71E-04
15	GO:0005787: signal peptidase complex	2.06E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	2.06E-04
17	GO:0031361: integral component of thylakoid membrane	2.06E-04
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.61E-04
19	GO:0048046: apoplast	3.18E-04
20	GO:0043036: starch grain	4.62E-04
21	GO:0005777: peroxisome	5.75E-04
22	GO:0030076: light-harvesting complex	6.92E-04
23	GO:0010007: magnesium chelatase complex	7.52E-04
24	GO:0009654: photosystem II oxygen evolving complex	9.35E-04
25	GO:0030658: transport vesicle membrane	1.07E-03
26	GO:0009517: PSII associated light-harvesting complex II	1.43E-03
27	GO:0031969: chloroplast membrane	1.72E-03
28	GO:0019898: extrinsic component of membrane	1.91E-03
29	GO:0005773: vacuole	2.58E-03
30	GO:0009501: amyloplast	3.67E-03
31	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	4.20E-03
32	GO:0016459: myosin complex	5.93E-03
33	GO:0032040: small-subunit processome	7.20E-03
34	GO:0030095: chloroplast photosystem II	8.56E-03
35	GO:0042651: thylakoid membrane	1.15E-02
36	GO:0005623: cell	1.54E-02
37	GO:0010319: stromule	2.43E-02
38	GO:0019005: SCF ubiquitin ligase complex	3.19E-02
39	GO:0009707: chloroplast outer membrane	3.19E-02