co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0007037: vacuolar phosphate transport	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0009658: chloroplast organization	9.45E-07
8	GO:0010583: response to cyclopentenone	2.93E-05
9	GO:0016556: mRNA modification	3.12E-05
10	GO:0045038: protein import into chloroplast thylakoid membrane	8.85E-05
11	GO:0070574: cadmium ion transmembrane transport	2.92E-04
12	GO:0051247: positive regulation of protein metabolic process	2.92E-04
13	GO:1902458: positive regulation of stomatal opening	2.92E-04
14	GO:0015904: tetracycline transport	2.92E-04
15	GO:2000905: negative regulation of starch metabolic process	2.92E-04
16	GO:0000305: response to oxygen radical	2.92E-04
17	GO:0006419: alanyl-tRNA aminoacylation	2.92E-04
18	GO:0080173: male-female gamete recognition during double fertilization	2.92E-04
19	GO:0009443: pyridoxal 5'-phosphate salvage	2.92E-04
20	GO:0051775: response to redox state	2.92E-04
21	GO:0043266: regulation of potassium ion transport	2.92E-04
22	GO:0010080: regulation of floral meristem growth	2.92E-04
23	GO:0006659: phosphatidylserine biosynthetic process	2.92E-04
24	GO:2000021: regulation of ion homeostasis	2.92E-04
25	GO:0032502: developmental process	4.03E-04
26	GO:1900865: chloroplast RNA modification	5.10E-04
27	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.40E-04
28	GO:0006568: tryptophan metabolic process	6.40E-04
29	GO:0010024: phytochromobilin biosynthetic process	6.40E-04
30	GO:0060359: response to ammonium ion	6.40E-04
31	GO:0048255: mRNA stabilization	6.40E-04
32	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	6.40E-04
33	GO:1900871: chloroplast mRNA modification	6.40E-04
34	GO:1901959: positive regulation of cutin biosynthetic process	6.40E-04
35	GO:0010207: photosystem II assembly	9.97E-04
36	GO:0043157: response to cation stress	1.04E-03
37	GO:0006788: heme oxidation	1.04E-03
38	GO:0010022: meristem determinacy	1.04E-03
39	GO:1904278: positive regulation of wax biosynthetic process	1.04E-03
40	GO:0048586: regulation of long-day photoperiodism, flowering	1.04E-03
41	GO:0010623: programmed cell death involved in cell development	1.04E-03
42	GO:0090153: regulation of sphingolipid biosynthetic process	1.04E-03
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.48E-03
44	GO:0010371: regulation of gibberellin biosynthetic process	1.48E-03
45	GO:0006107: oxaloacetate metabolic process	1.48E-03
46	GO:0019048: modulation by virus of host morphology or physiology	1.48E-03
47	GO:0031048: chromatin silencing by small RNA	1.48E-03
48	GO:1990019: protein storage vacuole organization	1.48E-03
49	GO:0009226: nucleotide-sugar biosynthetic process	1.48E-03
50	GO:0043572: plastid fission	1.48E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.48E-03
52	GO:0090308: regulation of methylation-dependent chromatin silencing	1.48E-03
53	GO:0010431: seed maturation	1.66E-03
54	GO:0010109: regulation of photosynthesis	1.99E-03
55	GO:2000306: positive regulation of photomorphogenesis	1.99E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.99E-03
57	GO:0045723: positive regulation of fatty acid biosynthetic process	1.99E-03
58	GO:0051567: histone H3-K9 methylation	1.99E-03
59	GO:0010508: positive regulation of autophagy	1.99E-03
60	GO:0008295: spermidine biosynthetic process	1.99E-03
61	GO:0006749: glutathione metabolic process	1.99E-03
62	GO:0006021: inositol biosynthetic process	1.99E-03
63	GO:0006734: NADH metabolic process	1.99E-03
64	GO:0016123: xanthophyll biosynthetic process	2.54E-03
65	GO:0080110: sporopollenin biosynthetic process	2.54E-03
66	GO:0010182: sugar mediated signaling pathway	2.71E-03
67	GO:0008654: phospholipid biosynthetic process	3.12E-03
68	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.14E-03
69	GO:0009959: negative gravitropism	3.14E-03
70	GO:0016554: cytidine to uridine editing	3.14E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	3.14E-03
72	GO:0000741: karyogamy	3.14E-03
73	GO:0016458: gene silencing	3.14E-03
74	GO:2000033: regulation of seed dormancy process	3.77E-03
75	GO:0048280: vesicle fusion with Golgi apparatus	3.77E-03
76	GO:0010189: vitamin E biosynthetic process	3.77E-03
77	GO:0006955: immune response	4.45E-03
78	GO:0006400: tRNA modification	4.45E-03
79	GO:0010027: thylakoid membrane organization	4.82E-03
80	GO:0048564: photosystem I assembly	5.17E-03
81	GO:0042255: ribosome assembly	5.17E-03
82	GO:0006353: DNA-templated transcription, termination	5.17E-03
83	GO:0006875: cellular metal ion homeostasis	5.17E-03
84	GO:0009690: cytokinin metabolic process	5.17E-03
85	GO:0006605: protein targeting	5.17E-03
86	GO:2000070: regulation of response to water deprivation	5.17E-03
87	GO:0071482: cellular response to light stimulus	5.92E-03
88	GO:0015996: chlorophyll catabolic process	5.92E-03
89	GO:0007186: G-protein coupled receptor signaling pathway	5.92E-03
90	GO:0009657: plastid organization	5.92E-03
91	GO:0006629: lipid metabolic process	6.69E-03
92	GO:0000373: Group II intron splicing	6.71E-03
93	GO:0009451: RNA modification	7.25E-03
94	GO:0009638: phototropism	7.54E-03
95	GO:0031425: chloroplast RNA processing	7.54E-03
96	GO:0009641: shade avoidance	8.40E-03
97	GO:0031627: telomeric loop formation	8.40E-03
98	GO:0010162: seed dormancy process	8.40E-03
99	GO:0006896: Golgi to vacuole transport	8.40E-03
100	GO:0009299: mRNA transcription	8.40E-03
101	GO:0030422: production of siRNA involved in RNA interference	8.40E-03
102	GO:0010216: maintenance of DNA methylation	9.30E-03
103	GO:0009773: photosynthetic electron transport in photosystem I	9.30E-03
104	GO:0006415: translational termination	9.30E-03
105	GO:0009073: aromatic amino acid family biosynthetic process	9.30E-03
106	GO:0043085: positive regulation of catalytic activity	9.30E-03
107	GO:0006352: DNA-templated transcription, initiation	9.30E-03
108	GO:0006810: transport	1.01E-02
109	GO:0016024: CDP-diacylglycerol biosynthetic process	1.02E-02
110	GO:0045037: protein import into chloroplast stroma	1.02E-02
111	GO:0010582: floral meristem determinacy	1.02E-02
112	GO:0005975: carbohydrate metabolic process	1.08E-02
113	GO:0009725: response to hormone	1.12E-02
114	GO:0030048: actin filament-based movement	1.12E-02
115	GO:0010628: positive regulation of gene expression	1.12E-02
116	GO:0006108: malate metabolic process	1.12E-02
117	GO:0006855: drug transmembrane transport	1.20E-02
118	GO:0009887: animal organ morphogenesis	1.22E-02
119	GO:0010020: chloroplast fission	1.22E-02
120	GO:0019853: L-ascorbic acid biosynthetic process	1.32E-02
121	GO:0010030: positive regulation of seed germination	1.32E-02
122	GO:0006071: glycerol metabolic process	1.43E-02
123	GO:0019953: sexual reproduction	1.65E-02
124	GO:0006306: DNA methylation	1.76E-02
125	GO:0031408: oxylipin biosynthetic process	1.76E-02
126	GO:0016998: cell wall macromolecule catabolic process	1.76E-02
127	GO:0009740: gibberellic acid mediated signaling pathway	1.87E-02
128	GO:0030245: cellulose catabolic process	1.88E-02
129	GO:0006012: galactose metabolic process	2.00E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	2.11E-02
131	GO:0010089: xylem development	2.12E-02
132	GO:0010584: pollen exine formation	2.12E-02
133	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.25E-02
134	GO:0042147: retrograde transport, endosome to Golgi	2.25E-02
135	GO:0042631: cellular response to water deprivation	2.37E-02
136	GO:0008033: tRNA processing	2.37E-02
137	GO:0048868: pollen tube development	2.50E-02
138	GO:0006342: chromatin silencing	2.50E-02
139	GO:0045489: pectin biosynthetic process	2.50E-02
140	GO:0006662: glycerol ether metabolic process	2.50E-02
141	GO:0010197: polar nucleus fusion	2.50E-02
142	GO:0009646: response to absence of light	2.64E-02
143	GO:0048544: recognition of pollen	2.64E-02
144	GO:0055072: iron ion homeostasis	2.77E-02
145	GO:0006623: protein targeting to vacuole	2.77E-02
146	GO:0009791: post-embryonic development	2.77E-02
147	GO:0006891: intra-Golgi vesicle-mediated transport	2.91E-02
148	GO:0009630: gravitropism	3.05E-02
149	GO:0010090: trichome morphogenesis	3.19E-02
150	GO:0040008: regulation of growth	3.28E-02
151	GO:0009567: double fertilization forming a zygote and endosperm	3.34E-02
152	GO:0009828: plant-type cell wall loosening	3.34E-02
153	GO:0051607: defense response to virus	3.63E-02
154	GO:0010029: regulation of seed germination	3.93E-02
155	GO:0009816: defense response to bacterium, incompatible interaction	3.93E-02
156	GO:0006888: ER to Golgi vesicle-mediated transport	4.25E-02
157	GO:0071555: cell wall organization	4.49E-02
158	GO:0006499: N-terminal protein myristoylation	4.89E-02
159	GO:0009407: toxin catabolic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0004222: metalloendopeptidase activity	1.06E-04
6	GO:0004033: aldo-keto reductase (NADP) activity	2.91E-04
7	GO:0050139: nicotinate-N-glucosyltransferase activity	2.92E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.92E-04
9	GO:0042834: peptidoglycan binding	2.92E-04
10	GO:0004813: alanine-tRNA ligase activity	2.92E-04
11	GO:0008158: hedgehog receptor activity	2.92E-04
12	GO:0005080: protein kinase C binding	2.92E-04
13	GO:0008746: NAD(P)+ transhydrogenase activity	2.92E-04
14	GO:0004519: endonuclease activity	4.47E-04
15	GO:0043425: bHLH transcription factor binding	6.40E-04
16	GO:0004766: spermidine synthase activity	6.40E-04
17	GO:0008493: tetracycline transporter activity	6.40E-04
18	GO:0003988: acetyl-CoA C-acyltransferase activity	6.40E-04
19	GO:0004512: inositol-3-phosphate synthase activity	6.40E-04
20	GO:0048531: beta-1,3-galactosyltransferase activity	6.40E-04
21	GO:0004362: glutathione-disulfide reductase activity	6.40E-04
22	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.97E-04
23	GO:0070402: NADPH binding	1.04E-03
24	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.04E-03
25	GO:0035197: siRNA binding	1.48E-03
26	GO:0015086: cadmium ion transmembrane transporter activity	1.48E-03
27	GO:0016149: translation release factor activity, codon specific	1.48E-03
28	GO:0004176: ATP-dependent peptidase activity	1.66E-03
29	GO:0005215: transporter activity	1.82E-03
30	GO:0001053: plastid sigma factor activity	1.99E-03
31	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.99E-03
32	GO:0016987: sigma factor activity	1.99E-03
33	GO:0004392: heme oxygenase (decyclizing) activity	1.99E-03
34	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.99E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.54E-03
36	GO:0008200: ion channel inhibitor activity	3.14E-03
37	GO:0004605: phosphatidate cytidylyltransferase activity	3.14E-03
38	GO:0004462: lactoylglutathione lyase activity	3.14E-03
39	GO:0016615: malate dehydrogenase activity	3.14E-03
40	GO:0008195: phosphatidate phosphatase activity	3.77E-03
41	GO:0030060: L-malate dehydrogenase activity	3.77E-03
42	GO:0008237: metallopeptidase activity	4.30E-03
43	GO:0015103: inorganic anion transmembrane transporter activity	4.45E-03
44	GO:0015238: drug transmembrane transporter activity	6.61E-03
45	GO:0003747: translation release factor activity	6.71E-03
46	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.71E-03
47	GO:0004743: pyruvate kinase activity	7.54E-03
48	GO:0030955: potassium ion binding	7.54E-03
49	GO:0003993: acid phosphatase activity	8.35E-03
50	GO:0008047: enzyme activator activity	8.40E-03
51	GO:0015020: glucuronosyltransferase activity	8.40E-03
52	GO:0004712: protein serine/threonine/tyrosine kinase activity	8.72E-03
53	GO:0003691: double-stranded telomeric DNA binding	9.30E-03
54	GO:0004521: endoribonuclease activity	1.02E-02
55	GO:0000049: tRNA binding	1.02E-02
56	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.02E-02
57	GO:0003723: RNA binding	1.08E-02
58	GO:0031072: heat shock protein binding	1.12E-02
59	GO:0008081: phosphoric diester hydrolase activity	1.12E-02
60	GO:0003774: motor activity	1.22E-02
61	GO:0008266: poly(U) RNA binding	1.22E-02
62	GO:0003690: double-stranded DNA binding	1.44E-02
63	GO:0004857: enzyme inhibitor activity	1.54E-02
64	GO:0005528: FK506 binding	1.54E-02
65	GO:0005345: purine nucleobase transmembrane transporter activity	1.65E-02
66	GO:0008810: cellulase activity	2.00E-02
67	GO:0003727: single-stranded RNA binding	2.12E-02
68	GO:0008514: organic anion transmembrane transporter activity	2.12E-02
69	GO:0047134: protein-disulfide reductase activity	2.25E-02
70	GO:0046873: metal ion transmembrane transporter activity	2.50E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	2.64E-02
72	GO:0050662: coenzyme binding	2.64E-02
73	GO:0048038: quinone binding	2.91E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.19E-02
75	GO:0015297: antiporter activity	3.28E-02
76	GO:0016759: cellulose synthase activity	3.34E-02
77	GO:0016597: amino acid binding	3.63E-02
78	GO:0008375: acetylglucosaminyltransferase activity	4.09E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.93E-10
2	GO:0009570: chloroplast stroma	1.62E-04
3	GO:0009535: chloroplast thylakoid membrane	3.44E-04
4	GO:0010319: stromule	5.13E-04
5	GO:0080085: signal recognition particle, chloroplast targeting	6.40E-04
6	GO:0009528: plastid inner membrane	1.04E-03
7	GO:0009941: chloroplast envelope	1.06E-03
8	GO:0005719: nuclear euchromatin	1.48E-03
9	GO:0009527: plastid outer membrane	1.99E-03
10	GO:0046658: anchored component of plasma membrane	2.10E-03
11	GO:0031969: chloroplast membrane	3.70E-03
12	GO:0030529: intracellular ribonucleoprotein complex	4.82E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	5.17E-03
14	GO:0000783: nuclear telomere cap complex	5.92E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.92E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.71E-03
17	GO:0005720: nuclear heterochromatin	6.71E-03
18	GO:0009705: plant-type vacuole membrane	7.04E-03
19	GO:0015030: Cajal body	7.54E-03
20	GO:0043231: intracellular membrane-bounded organelle	7.76E-03
21	GO:0016459: myosin complex	8.40E-03
22	GO:0031225: anchored component of membrane	9.63E-03
23	GO:0005886: plasma membrane	9.89E-03
24	GO:0009508: plastid chromosome	1.12E-02
25	GO:0016021: integral component of membrane	1.14E-02
26	GO:0042651: thylakoid membrane	1.65E-02
27	GO:0009532: plastid stroma	1.76E-02
28	GO:0012505: endomembrane system	1.93E-02
29	GO:0009706: chloroplast inner membrane	1.99E-02
30	GO:0009295: nucleoid	3.48E-02
31	GO:0009707: chloroplast outer membrane	4.57E-02
32	GO:0000151: ubiquitin ligase complex	4.57E-02
33	GO:0005773: vacuole	4.97E-02