co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
2	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.00E-04
3	GO:0046939: nucleotide phosphorylation	2.36E-04
4	GO:0006672: ceramide metabolic process	2.36E-04
5	GO:0010372: positive regulation of gibberellin biosynthetic process	2.36E-04
6	GO:0006517: protein deglycosylation	3.92E-04
7	GO:0001927: exocyst assembly	3.92E-04
8	GO:0010359: regulation of anion channel activity	3.92E-04
9	GO:0043617: cellular response to sucrose starvation	3.92E-04
10	GO:0090630: activation of GTPase activity	3.92E-04
11	GO:0006511: ubiquitin-dependent protein catabolic process	5.38E-04
12	GO:0051601: exocyst localization	5.64E-04
13	GO:0006536: glutamate metabolic process	7.50E-04
14	GO:0006564: L-serine biosynthetic process	9.47E-04
15	GO:0097428: protein maturation by iron-sulfur cluster transfer	9.47E-04
16	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.16E-03
17	GO:0010555: response to mannitol	1.38E-03
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.38E-03
19	GO:0009554: megasporogenesis	1.38E-03
20	GO:0006499: N-terminal protein myristoylation	1.58E-03
21	GO:0006491: N-glycan processing	1.87E-03
22	GO:0006402: mRNA catabolic process	1.87E-03
23	GO:0060321: acceptance of pollen	2.14E-03
24	GO:0046685: response to arsenic-containing substance	2.41E-03
25	GO:0009821: alkaloid biosynthetic process	2.41E-03
26	GO:0005982: starch metabolic process	2.70E-03
27	GO:0009688: abscisic acid biosynthetic process	3.00E-03
28	GO:0043069: negative regulation of programmed cell death	3.00E-03
29	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-03
30	GO:0072593: reactive oxygen species metabolic process	3.31E-03
31	GO:0006790: sulfur compound metabolic process	3.63E-03
32	GO:0016925: protein sumoylation	3.63E-03
33	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	3.63E-03
34	GO:0006096: glycolytic process	3.68E-03
35	GO:0005986: sucrose biosynthetic process	3.95E-03
36	GO:0006829: zinc II ion transport	3.95E-03
37	GO:0006807: nitrogen compound metabolic process	3.95E-03
38	GO:0034605: cellular response to heat	4.30E-03
39	GO:0010167: response to nitrate	4.64E-03
40	GO:0005985: sucrose metabolic process	4.64E-03
41	GO:0046854: phosphatidylinositol phosphorylation	4.64E-03
42	GO:0009058: biosynthetic process	5.82E-03
43	GO:0010431: seed maturation	6.14E-03
44	GO:0015992: proton transport	6.14E-03
45	GO:0042744: hydrogen peroxide catabolic process	6.28E-03
46	GO:0030433: ubiquitin-dependent ERAD pathway	6.54E-03
47	GO:0010227: floral organ abscission	6.94E-03
48	GO:0010089: xylem development	7.35E-03
49	GO:0009561: megagametogenesis	7.35E-03
50	GO:0009306: protein secretion	7.35E-03
51	GO:0010118: stomatal movement	8.21E-03
52	GO:0009739: response to gibberellin	8.52E-03
53	GO:0009646: response to absence of light	9.10E-03
54	GO:0046686: response to cadmium ion	9.25E-03
55	GO:0009851: auxin biosynthetic process	9.56E-03
56	GO:0031047: gene silencing by RNA	1.05E-02
57	GO:1901657: glycosyl compound metabolic process	1.10E-02
58	GO:0030163: protein catabolic process	1.10E-02
59	GO:0010252: auxin homeostasis	1.15E-02
60	GO:0006914: autophagy	1.15E-02
61	GO:0016579: protein deubiquitination	1.25E-02
62	GO:0009615: response to virus	1.30E-02
63	GO:0006888: ER to Golgi vesicle-mediated transport	1.46E-02
64	GO:0010119: regulation of stomatal movement	1.74E-02
65	GO:0006099: tricarboxylic acid cycle	1.91E-02
66	GO:0030001: metal ion transport	2.03E-02
67	GO:0006887: exocytosis	2.10E-02
68	GO:0009751: response to salicylic acid	2.14E-02
69	GO:0009744: response to sucrose	2.22E-02
70	GO:0009926: auxin polar transport	2.22E-02
71	GO:0009753: response to jasmonic acid	2.33E-02
72	GO:0006855: drug transmembrane transport	2.48E-02
73	GO:0031347: regulation of defense response	2.55E-02
74	GO:0009809: lignin biosynthetic process	2.75E-02
75	GO:0009620: response to fungus	3.31E-02
76	GO:0009624: response to nematode	3.53E-02
77	GO:0018105: peptidyl-serine phosphorylation	3.61E-02
78	GO:0009611: response to wounding	3.92E-02
79	GO:0035556: intracellular signal transduction	4.05E-02
80	GO:0055085: transmembrane transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004298: threonine-type endopeptidase activity	1.36E-05
2	GO:0010013: N-1-naphthylphthalamic acid binding	1.00E-04
3	GO:0019786: Atg8-specific protease activity	1.00E-04
4	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.00E-04
5	GO:0048037: cofactor binding	1.00E-04
6	GO:0004743: pyruvate kinase activity	1.09E-04
7	GO:0030955: potassium ion binding	1.09E-04
8	GO:0004617: phosphoglycerate dehydrogenase activity	2.36E-04
9	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.36E-04
10	GO:0019779: Atg8 activating enzyme activity	2.36E-04
11	GO:0008517: folic acid transporter activity	2.36E-04
12	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.36E-04
13	GO:0004566: beta-glucuronidase activity	2.36E-04
14	GO:0052692: raffinose alpha-galactosidase activity	3.92E-04
15	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	3.92E-04
16	GO:0004557: alpha-galactosidase activity	3.92E-04
17	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	3.92E-04
18	GO:0004351: glutamate decarboxylase activity	5.64E-04
19	GO:0019201: nucleotide kinase activity	5.64E-04
20	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.64E-04
21	GO:0004031: aldehyde oxidase activity	7.50E-04
22	GO:0050302: indole-3-acetaldehyde oxidase activity	7.50E-04
23	GO:0019776: Atg8 ligase activity	7.50E-04
24	GO:0010279: indole-3-acetic acid amido synthetase activity	7.50E-04
25	GO:0004518: nuclease activity	8.35E-04
26	GO:0031386: protein tag	9.47E-04
27	GO:0031593: polyubiquitin binding	1.16E-03
28	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.16E-03
29	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.16E-03
30	GO:0036402: proteasome-activating ATPase activity	1.16E-03
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.38E-03
32	GO:0004017: adenylate kinase activity	1.38E-03
33	GO:0016157: sucrose synthase activity	1.38E-03
34	GO:0008233: peptidase activity	2.35E-03
35	GO:0005198: structural molecule activity	2.61E-03
36	GO:0016844: strictosidine synthase activity	2.70E-03
37	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.00E-03
38	GO:0004177: aminopeptidase activity	3.31E-03
39	GO:0008559: xenobiotic-transporting ATPase activity	3.31E-03
40	GO:0017025: TBP-class protein binding	4.64E-03
41	GO:0030170: pyridoxal phosphate binding	6.13E-03
42	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.14E-03
43	GO:0046873: metal ion transmembrane transporter activity	8.65E-03
44	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.00E-02
45	GO:0046872: metal ion binding	1.08E-02
46	GO:0000287: magnesium ion binding	1.16E-02
47	GO:0004601: peroxidase activity	1.18E-02
48	GO:0016597: amino acid binding	1.25E-02
49	GO:0005516: calmodulin binding	1.36E-02
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.40E-02
51	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.46E-02
52	GO:0102483: scopolin beta-glucosidase activity	1.46E-02
53	GO:0004683: calmodulin-dependent protein kinase activity	1.46E-02
54	GO:0005096: GTPase activator activity	1.62E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.74E-02
56	GO:0003993: acid phosphatase activity	1.91E-02
57	GO:0004722: protein serine/threonine phosphatase activity	1.93E-02
58	GO:0008422: beta-glucosidase activity	1.97E-02
59	GO:0051537: 2 iron, 2 sulfur cluster binding	2.35E-02
60	GO:0051287: NAD binding	2.55E-02
61	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.75E-02
62	GO:0016298: lipase activity	2.81E-02
63	GO:0008026: ATP-dependent helicase activity	3.68E-02
64	GO:0000166: nucleotide binding	3.84E-02
65	GO:0008565: protein transporter activity	4.70E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	8.62E-07
2	GO:0005839: proteasome core complex	1.36E-05
3	GO:0005829: cytosol	9.60E-05
4	GO:0016442: RISC complex	1.00E-04
5	GO:0048471: perinuclear region of cytoplasm	1.52E-04
6	GO:0005838: proteasome regulatory particle	3.92E-04
7	GO:0005775: vacuolar lumen	5.64E-04
8	GO:0005776: autophagosome	7.50E-04
9	GO:0031597: cytosolic proteasome complex	1.38E-03
10	GO:0031595: nuclear proteasome complex	1.62E-03
11	GO:0000421: autophagosome membrane	1.87E-03
12	GO:0005773: vacuole	2.01E-03
13	GO:0019773: proteasome core complex, alpha-subunit complex	2.14E-03
14	GO:0010494: cytoplasmic stress granule	2.41E-03
15	GO:0008540: proteasome regulatory particle, base subcomplex	2.70E-03
16	GO:0005774: vacuolar membrane	2.78E-03
17	GO:0005765: lysosomal membrane	3.31E-03
18	GO:0005665: DNA-directed RNA polymerase II, core complex	3.63E-03
19	GO:0005618: cell wall	3.63E-03
20	GO:0000419: DNA-directed RNA polymerase V complex	5.00E-03
21	GO:0031410: cytoplasmic vesicle	6.54E-03
22	GO:0000145: exocyst	1.05E-02
23	GO:0000932: P-body	1.30E-02
24	GO:0005886: plasma membrane	1.35E-02
25	GO:0005802: trans-Golgi network	1.48E-02
26	GO:0005768: endosome	1.74E-02
27	GO:0000325: plant-type vacuole	1.74E-02
28	GO:0005856: cytoskeleton	2.41E-02
29	GO:0005635: nuclear envelope	2.88E-02
30	GO:0048046: apoplast	3.28E-02
31	GO:0009524: phragmoplast	4.30E-02
32	GO:0005759: mitochondrial matrix	4.87E-02