co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0043972: histone H3-K23 acetylation	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0044154: histone H3-K14 acetylation	0.00E+00
6	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.37E-04
7	GO:0043971: histone H3-K18 acetylation	2.48E-04
8	GO:0043087: regulation of GTPase activity	2.48E-04
9	GO:0043609: regulation of carbon utilization	2.48E-04
10	GO:0034757: negative regulation of iron ion transport	2.48E-04
11	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.48E-04
12	GO:0051171: regulation of nitrogen compound metabolic process	2.48E-04
13	GO:0006002: fructose 6-phosphate metabolic process	2.82E-04
14	GO:0080005: photosystem stoichiometry adjustment	5.49E-04
15	GO:0010271: regulation of chlorophyll catabolic process	5.49E-04
16	GO:0001736: establishment of planar polarity	5.49E-04
17	GO:0045037: protein import into chloroplast stroma	6.25E-04
18	GO:0010540: basipetal auxin transport	7.98E-04
19	GO:0080188: RNA-directed DNA methylation	8.92E-04
20	GO:0006013: mannose metabolic process	8.92E-04
21	GO:0080117: secondary growth	8.92E-04
22	GO:0030029: actin filament-based process	8.92E-04
23	GO:0006000: fructose metabolic process	8.92E-04
24	GO:0009926: auxin polar transport	1.14E-03
25	GO:0009800: cinnamic acid biosynthetic process	1.27E-03
26	GO:0010255: glucose mediated signaling pathway	1.27E-03
27	GO:0051639: actin filament network formation	1.27E-03
28	GO:0015846: polyamine transport	1.70E-03
29	GO:0006021: inositol biosynthetic process	1.70E-03
30	GO:0009956: radial pattern formation	1.70E-03
31	GO:0051764: actin crosslink formation	1.70E-03
32	GO:0010158: abaxial cell fate specification	2.17E-03
33	GO:0080167: response to karrikin	2.58E-03
34	GO:0002229: defense response to oomycetes	2.64E-03
35	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.67E-03
36	GO:0006559: L-phenylalanine catabolic process	2.67E-03
37	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.67E-03
38	GO:0048831: regulation of shoot system development	2.67E-03
39	GO:0048827: phyllome development	2.67E-03
40	GO:0042549: photosystem II stabilization	2.67E-03
41	GO:0009942: longitudinal axis specification	3.21E-03
42	GO:0048509: regulation of meristem development	3.21E-03
43	GO:0048444: floral organ morphogenesis	3.21E-03
44	GO:0006401: RNA catabolic process	3.79E-03
45	GO:0009610: response to symbiotic fungus	3.79E-03
46	GO:0010050: vegetative phase change	3.79E-03
47	GO:0006353: DNA-templated transcription, termination	4.39E-03
48	GO:0009850: auxin metabolic process	4.39E-03
49	GO:0000105: histidine biosynthetic process	4.39E-03
50	GO:0009657: plastid organization	5.03E-03
51	GO:0010052: guard cell differentiation	5.03E-03
52	GO:0007389: pattern specification process	5.03E-03
53	GO:0044030: regulation of DNA methylation	5.03E-03
54	GO:0007186: G-protein coupled receptor signaling pathway	5.03E-03
55	GO:0000160: phosphorelay signal transduction system	5.22E-03
56	GO:0009451: RNA modification	5.36E-03
57	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.70E-03
58	GO:0000373: Group II intron splicing	5.70E-03
59	GO:0009910: negative regulation of flower development	5.75E-03
60	GO:0010380: regulation of chlorophyll biosynthetic process	6.40E-03
61	GO:0016571: histone methylation	6.40E-03
62	GO:0008202: steroid metabolic process	6.40E-03
63	GO:0016573: histone acetylation	6.40E-03
64	GO:0006535: cysteine biosynthetic process from serine	7.12E-03
65	GO:0048829: root cap development	7.12E-03
66	GO:0009734: auxin-activated signaling pathway	7.85E-03
67	GO:0006415: translational termination	7.88E-03
68	GO:0009750: response to fructose	7.88E-03
69	GO:0016485: protein processing	7.88E-03
70	GO:0048765: root hair cell differentiation	7.88E-03
71	GO:0051707: response to other organism	8.13E-03
72	GO:0010582: floral meristem determinacy	8.66E-03
73	GO:0006790: sulfur compound metabolic process	8.66E-03
74	GO:0010229: inflorescence development	9.47E-03
75	GO:0010020: chloroplast fission	1.03E-02
76	GO:0009933: meristem structural organization	1.03E-02
77	GO:0009266: response to temperature stimulus	1.03E-02
78	GO:0009934: regulation of meristem structural organization	1.03E-02
79	GO:0009736: cytokinin-activated signaling pathway	1.10E-02
80	GO:0009416: response to light stimulus	1.11E-02
81	GO:0046854: phosphatidylinositol phosphorylation	1.12E-02
82	GO:0009825: multidimensional cell growth	1.12E-02
83	GO:0006863: purine nucleobase transport	1.21E-02
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.25E-02
85	GO:0006338: chromatin remodeling	1.30E-02
86	GO:0010187: negative regulation of seed germination	1.30E-02
87	GO:0051017: actin filament bundle assembly	1.30E-02
88	GO:0006289: nucleotide-excision repair	1.30E-02
89	GO:0019344: cysteine biosynthetic process	1.30E-02
90	GO:0006096: glycolytic process	1.30E-02
91	GO:0010073: meristem maintenance	1.39E-02
92	GO:0051302: regulation of cell division	1.39E-02
93	GO:0009740: gibberellic acid mediated signaling pathway	1.47E-02
94	GO:0003333: amino acid transmembrane transport	1.49E-02
95	GO:0006306: DNA methylation	1.49E-02
96	GO:0009624: response to nematode	1.57E-02
97	GO:0035428: hexose transmembrane transport	1.59E-02
98	GO:0016226: iron-sulfur cluster assembly	1.59E-02
99	GO:0051726: regulation of cell cycle	1.66E-02
100	GO:0071215: cellular response to abscisic acid stimulus	1.69E-02
101	GO:0070417: cellular response to cold	1.90E-02
102	GO:0010087: phloem or xylem histogenesis	2.01E-02
103	GO:0048653: anther development	2.01E-02
104	GO:0010305: leaf vascular tissue pattern formation	2.12E-02
105	GO:0009958: positive gravitropism	2.12E-02
106	GO:0048868: pollen tube development	2.12E-02
107	GO:0046323: glucose import	2.12E-02
108	GO:0048825: cotyledon development	2.34E-02
109	GO:0009749: response to glucose	2.34E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
111	GO:0006633: fatty acid biosynthetic process	2.47E-02
112	GO:0010583: response to cyclopentenone	2.58E-02
113	GO:0031047: gene silencing by RNA	2.58E-02
114	GO:0045490: pectin catabolic process	2.71E-02
115	GO:0010252: auxin homeostasis	2.82E-02
116	GO:0009911: positive regulation of flower development	3.19E-02
117	GO:0010468: regulation of gene expression	3.24E-02
118	GO:0010029: regulation of seed germination	3.32E-02
119	GO:0010411: xyloglucan metabolic process	3.59E-02
120	GO:0009733: response to auxin	3.77E-02
121	GO:0018298: protein-chromophore linkage	3.86E-02
122	GO:0010311: lateral root formation	4.00E-02
123	GO:0006499: N-terminal protein myristoylation	4.14E-02
124	GO:0009793: embryo development ending in seed dormancy	4.14E-02
125	GO:0009658: chloroplast organization	4.19E-02
126	GO:0007568: aging	4.28E-02
127	GO:0006865: amino acid transport	4.42E-02
128	GO:0006970: response to osmotic stress	4.50E-02
129	GO:0007049: cell cycle	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
7	GO:0008859: exoribonuclease II activity	0.00E+00
8	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.48E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.48E-04
10	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.48E-04
11	GO:0008934: inositol monophosphate 1-phosphatase activity	5.49E-04
12	GO:0052833: inositol monophosphate 4-phosphatase activity	5.49E-04
13	GO:0009884: cytokinin receptor activity	5.49E-04
14	GO:0050017: L-3-cyanoalanine synthase activity	5.49E-04
15	GO:0004047: aminomethyltransferase activity	5.49E-04
16	GO:0052832: inositol monophosphate 3-phosphatase activity	5.49E-04
17	GO:0008805: carbon-monoxide oxygenase activity	5.49E-04
18	GO:0016805: dipeptidase activity	8.92E-04
19	GO:0005034: osmosensor activity	8.92E-04
20	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.92E-04
21	GO:0045548: phenylalanine ammonia-lyase activity	8.92E-04
22	GO:0003913: DNA photolyase activity	8.92E-04
23	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.27E-03
24	GO:0030570: pectate lyase activity	1.57E-03
25	GO:0070628: proteasome binding	1.70E-03
26	GO:0010011: auxin binding	1.70E-03
27	GO:0010328: auxin influx transmembrane transporter activity	1.70E-03
28	GO:0010385: double-stranded methylated DNA binding	1.70E-03
29	GO:0005471: ATP:ADP antiporter activity	2.17E-03
30	GO:0019901: protein kinase binding	2.47E-03
31	GO:0031593: polyubiquitin binding	2.67E-03
32	GO:0004462: lactoylglutathione lyase activity	2.67E-03
33	GO:2001070: starch binding	2.67E-03
34	GO:0019900: kinase binding	3.21E-03
35	GO:0004559: alpha-mannosidase activity	3.21E-03
36	GO:0004124: cysteine synthase activity	3.21E-03
37	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.21E-03
38	GO:0008237: metallopeptidase activity	3.40E-03
39	GO:0003872: 6-phosphofructokinase activity	3.79E-03
40	GO:0019899: enzyme binding	3.79E-03
41	GO:0009881: photoreceptor activity	3.79E-03
42	GO:0008142: oxysterol binding	5.03E-03
43	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.48E-03
44	GO:0003747: translation release factor activity	5.70E-03
45	GO:0009672: auxin:proton symporter activity	6.40E-03
46	GO:0004673: protein histidine kinase activity	7.12E-03
47	GO:0015020: glucuronosyltransferase activity	7.12E-03
48	GO:0008327: methyl-CpG binding	7.88E-03
49	GO:0035091: phosphatidylinositol binding	8.79E-03
50	GO:0043621: protein self-association	8.79E-03
51	GO:0010329: auxin efflux transmembrane transporter activity	9.47E-03
52	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
53	GO:0009982: pseudouridine synthase activity	9.47E-03
54	GO:0000175: 3'-5'-exoribonuclease activity	9.47E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.21E-02
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.21E-02
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.21E-02
58	GO:0004857: enzyme inhibitor activity	1.30E-02
59	GO:0043130: ubiquitin binding	1.30E-02
60	GO:0043424: protein histidine kinase binding	1.39E-02
61	GO:0005345: purine nucleobase transmembrane transporter activity	1.39E-02
62	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.43E-02
63	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.43E-02
64	GO:0004540: ribonuclease activity	1.49E-02
65	GO:0004871: signal transducer activity	1.59E-02
66	GO:0004402: histone acetyltransferase activity	2.01E-02
67	GO:0001085: RNA polymerase II transcription factor binding	2.12E-02
68	GO:0016829: lyase activity	2.13E-02
69	GO:0010181: FMN binding	2.23E-02
70	GO:0005355: glucose transmembrane transporter activity	2.23E-02
71	GO:0015144: carbohydrate transmembrane transporter activity	2.35E-02
72	GO:0008565: protein transporter activity	2.35E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.46E-02
74	GO:0046872: metal ion binding	2.55E-02
75	GO:0004518: nuclease activity	2.58E-02
76	GO:0005351: sugar:proton symporter activity	2.65E-02
77	GO:0000156: phosphorelay response regulator activity	2.70E-02
78	GO:0051015: actin filament binding	2.70E-02
79	GO:0003684: damaged DNA binding	2.82E-02
80	GO:0005200: structural constituent of cytoskeleton	2.94E-02
81	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
82	GO:0042802: identical protein binding	3.44E-02
83	GO:0004806: triglyceride lipase activity	3.59E-02
84	GO:0004721: phosphoprotein phosphatase activity	3.59E-02
85	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
86	GO:0005096: GTPase activator activity	4.00E-02
87	GO:0004222: metalloendopeptidase activity	4.14E-02
88	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.28E-02
89	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0010370: perinucleolar chromocenter	2.48E-04
4	GO:0045254: pyruvate dehydrogenase complex	5.49E-04
5	GO:0032432: actin filament bundle	1.27E-03
6	GO:0000178: exosome (RNase complex)	2.17E-03
7	GO:0005945: 6-phosphofructokinase complex	2.17E-03
8	GO:0009986: cell surface	3.79E-03
9	GO:0005720: nuclear heterochromatin	5.70E-03
10	GO:0009507: chloroplast	7.24E-03
11	GO:0005884: actin filament	7.88E-03
12	GO:0016602: CCAAT-binding factor complex	9.47E-03
13	GO:0009574: preprophase band	9.47E-03
14	GO:0000419: DNA-directed RNA polymerase V complex	1.21E-02
15	GO:0009706: chloroplast inner membrane	1.57E-02
16	GO:0005886: plasma membrane	1.65E-02
17	GO:0005623: cell	2.02E-02
18	GO:0005770: late endosome	2.12E-02
19	GO:0005759: mitochondrial matrix	2.47E-02
20	GO:0010319: stromule	2.94E-02
21	GO:0030529: intracellular ribonucleoprotein complex	3.19E-02
22	GO:0000932: P-body	3.19E-02
23	GO:0005667: transcription factor complex	3.46E-02
24	GO:0009707: chloroplast outer membrane	3.86E-02
25	GO:0009536: plastid	4.28E-02
26	GO:0009570: chloroplast stroma	4.71E-02
27	GO:0005819: spindle	4.86E-02
28	GO:0009579: thylakoid	4.97E-02