co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0009069: serine family amino acid metabolic process	0.00E+00
3	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
4	GO:0070178: D-serine metabolic process	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0017038: protein import	0.00E+00
12	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
13	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.13E-06
14	GO:0018026: peptidyl-lysine monomethylation	3.13E-06
15	GO:0009658: chloroplast organization	6.53E-06
16	GO:0010027: thylakoid membrane organization	3.88E-05
17	GO:0015995: chlorophyll biosynthetic process	5.34E-05
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.07E-04
19	GO:0042793: transcription from plastid promoter	1.07E-04
20	GO:0015979: photosynthesis	1.47E-04
21	GO:0043686: co-translational protein modification	2.60E-04
22	GO:1902458: positive regulation of stomatal opening	2.60E-04
23	GO:0005980: glycogen catabolic process	2.60E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.60E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	2.60E-04
26	GO:1904143: positive regulation of carotenoid biosynthetic process	5.74E-04
27	GO:0001682: tRNA 5'-leader removal	5.74E-04
28	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.74E-04
29	GO:0006568: tryptophan metabolic process	5.74E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.74E-04
31	GO:0006423: cysteinyl-tRNA aminoacylation	5.74E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	5.84E-04
33	GO:0019684: photosynthesis, light reaction	5.84E-04
34	GO:0010207: photosystem II assembly	8.52E-04
35	GO:2001295: malonyl-CoA biosynthetic process	9.31E-04
36	GO:0006418: tRNA aminoacylation for protein translation	1.28E-03
37	GO:0007231: osmosensory signaling pathway	1.33E-03
38	GO:0009102: biotin biosynthetic process	1.33E-03
39	GO:0051085: chaperone mediated protein folding requiring cofactor	1.33E-03
40	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.33E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.33E-03
42	GO:0010731: protein glutathionylation	1.33E-03
43	GO:0046739: transport of virus in multicellular host	1.33E-03
44	GO:0016556: mRNA modification	1.33E-03
45	GO:0006986: response to unfolded protein	1.33E-03
46	GO:0010109: regulation of photosynthesis	1.78E-03
47	GO:0019464: glycine decarboxylation via glycine cleavage system	1.78E-03
48	GO:0033500: carbohydrate homeostasis	1.78E-03
49	GO:0031365: N-terminal protein amino acid modification	2.27E-03
50	GO:0009107: lipoate biosynthetic process	2.27E-03
51	GO:0000304: response to singlet oxygen	2.27E-03
52	GO:0016120: carotene biosynthetic process	2.27E-03
53	GO:0032543: mitochondrial translation	2.27E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
55	GO:0010197: polar nucleus fusion	2.29E-03
56	GO:0006662: glycerol ether metabolic process	2.29E-03
57	GO:0009646: response to absence of light	2.47E-03
58	GO:0006563: L-serine metabolic process	2.80E-03
59	GO:0016554: cytidine to uridine editing	2.80E-03
60	GO:0006655: phosphatidylglycerol biosynthetic process	2.80E-03
61	GO:0010190: cytochrome b6f complex assembly	2.80E-03
62	GO:0000741: karyogamy	2.80E-03
63	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.80E-03
64	GO:0032502: developmental process	3.02E-03
65	GO:0009742: brassinosteroid mediated signaling pathway	3.05E-03
66	GO:0080086: stamen filament development	3.36E-03
67	GO:0042372: phylloquinone biosynthetic process	3.36E-03
68	GO:1901259: chloroplast rRNA processing	3.36E-03
69	GO:0017148: negative regulation of translation	3.36E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.36E-03
71	GO:0009772: photosynthetic electron transport in photosystem II	3.97E-03
72	GO:0000105: histidine biosynthetic process	4.60E-03
73	GO:0009231: riboflavin biosynthetic process	4.60E-03
74	GO:0007155: cell adhesion	4.60E-03
75	GO:0048564: photosystem I assembly	4.60E-03
76	GO:0046620: regulation of organ growth	4.60E-03
77	GO:0006605: protein targeting	4.60E-03
78	GO:0010078: maintenance of root meristem identity	4.60E-03
79	GO:2000070: regulation of response to water deprivation	4.60E-03
80	GO:0043562: cellular response to nitrogen levels	5.27E-03
81	GO:0071482: cellular response to light stimulus	5.27E-03
82	GO:0015996: chlorophyll catabolic process	5.27E-03
83	GO:0007186: G-protein coupled receptor signaling pathway	5.27E-03
84	GO:0010497: plasmodesmata-mediated intercellular transport	5.27E-03
85	GO:0009657: plastid organization	5.27E-03
86	GO:0032544: plastid translation	5.27E-03
87	GO:0009813: flavonoid biosynthetic process	5.59E-03
88	GO:0046685: response to arsenic-containing substance	5.98E-03
89	GO:0048507: meristem development	5.98E-03
90	GO:0046916: cellular transition metal ion homeostasis	5.98E-03
91	GO:0009638: phototropism	6.71E-03
92	GO:0043067: regulation of programmed cell death	6.71E-03
93	GO:0006779: porphyrin-containing compound biosynthetic process	6.71E-03
94	GO:1900865: chloroplast RNA modification	6.71E-03
95	GO:0045087: innate immune response	6.74E-03
96	GO:0034599: cellular response to oxidative stress	7.05E-03
97	GO:0045036: protein targeting to chloroplast	7.47E-03
98	GO:0009641: shade avoidance	7.47E-03
99	GO:0006896: Golgi to vacuole transport	7.47E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	7.47E-03
101	GO:0030001: metal ion transport	7.69E-03
102	GO:0009684: indoleacetic acid biosynthetic process	8.27E-03
103	GO:0006816: calcium ion transport	8.27E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	8.27E-03
105	GO:0006415: translational termination	8.27E-03
106	GO:0005983: starch catabolic process	9.09E-03
107	GO:0016024: CDP-diacylglycerol biosynthetic process	9.09E-03
108	GO:0045037: protein import into chloroplast stroma	9.09E-03
109	GO:0009767: photosynthetic electron transport chain	9.94E-03
110	GO:0010588: cotyledon vascular tissue pattern formation	9.94E-03
111	GO:0009266: response to temperature stimulus	1.08E-02
112	GO:0048467: gynoecium development	1.08E-02
113	GO:0009735: response to cytokinin	1.08E-02
114	GO:0010020: chloroplast fission	1.08E-02
115	GO:0019853: L-ascorbic acid biosynthetic process	1.17E-02
116	GO:0010030: positive regulation of seed germination	1.17E-02
117	GO:0070588: calcium ion transmembrane transport	1.17E-02
118	GO:0000162: tryptophan biosynthetic process	1.27E-02
119	GO:0048367: shoot system development	1.44E-02
120	GO:0008299: isoprenoid biosynthetic process	1.46E-02
121	GO:0048511: rhythmic process	1.56E-02
122	GO:0031408: oxylipin biosynthetic process	1.56E-02
123	GO:0045454: cell redox homeostasis	1.64E-02
124	GO:0030245: cellulose catabolic process	1.67E-02
125	GO:0006730: one-carbon metabolic process	1.67E-02
126	GO:0006012: galactose metabolic process	1.77E-02
127	GO:0009306: protein secretion	1.88E-02
128	GO:0016117: carotenoid biosynthetic process	1.99E-02
129	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.99E-02
130	GO:0042147: retrograde transport, endosome to Golgi	1.99E-02
131	GO:0010087: phloem or xylem histogenesis	2.11E-02
132	GO:0042631: cellular response to water deprivation	2.11E-02
133	GO:0080022: primary root development	2.11E-02
134	GO:0008033: tRNA processing	2.11E-02
135	GO:0000413: protein peptidyl-prolyl isomerization	2.11E-02
136	GO:0010182: sugar mediated signaling pathway	2.22E-02
137	GO:0009741: response to brassinosteroid	2.22E-02
138	GO:0009958: positive gravitropism	2.22E-02
139	GO:0010305: leaf vascular tissue pattern formation	2.22E-02
140	GO:0042752: regulation of circadian rhythm	2.34E-02
141	GO:0048544: recognition of pollen	2.34E-02
142	GO:0015986: ATP synthesis coupled proton transport	2.34E-02
143	GO:0009851: auxin biosynthetic process	2.46E-02
144	GO:0006623: protein targeting to vacuole	2.46E-02
145	GO:0048825: cotyledon development	2.46E-02
146	GO:0071554: cell wall organization or biogenesis	2.58E-02
147	GO:0006891: intra-Golgi vesicle-mediated transport	2.58E-02
148	GO:0006633: fatty acid biosynthetic process	2.64E-02
149	GO:0010583: response to cyclopentenone	2.70E-02
150	GO:0006413: translational initiation	2.71E-02
151	GO:0040008: regulation of growth	2.77E-02
152	GO:0010090: trichome morphogenesis	2.83E-02
153	GO:0055114: oxidation-reduction process	3.45E-02
154	GO:0009607: response to biotic stimulus	3.49E-02
155	GO:0006888: ER to Golgi vesicle-mediated transport	3.77E-02
156	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
157	GO:0048481: plant ovule development	4.05E-02
158	GO:0018298: protein-chromophore linkage	4.05E-02
159	GO:0009416: response to light stimulus	4.35E-02
160	GO:0009910: negative regulation of flower development	4.49E-02
161	GO:0048527: lateral root development	4.49E-02
162	GO:0009793: embryo development ending in seed dormancy	4.63E-02
163	GO:0009853: photorespiration	4.79E-02
164	GO:0016051: carbohydrate biosynthetic process	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0030378: serine racemase activity	0.00E+00
8	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
11	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
12	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
13	GO:0004823: leucine-tRNA ligase activity	0.00E+00
14	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
15	GO:0002161: aminoacyl-tRNA editing activity	1.13E-05
16	GO:0016279: protein-lysine N-methyltransferase activity	4.61E-05
17	GO:0045430: chalcone isomerase activity	4.61E-05
18	GO:0008266: poly(U) RNA binding	4.83E-05
19	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.60E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.60E-04
21	GO:0008184: glycogen phosphorylase activity	2.60E-04
22	GO:0050308: sugar-phosphatase activity	2.60E-04
23	GO:0004856: xylulokinase activity	2.60E-04
24	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.60E-04
25	GO:0004645: phosphorylase activity	2.60E-04
26	GO:0042586: peptide deformylase activity	2.60E-04
27	GO:0019203: carbohydrate phosphatase activity	2.60E-04
28	GO:0005080: protein kinase C binding	2.60E-04
29	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.60E-04
30	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.74E-04
31	GO:0004817: cysteine-tRNA ligase activity	5.74E-04
32	GO:0030385: ferredoxin:thioredoxin reductase activity	5.74E-04
33	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.74E-04
34	GO:0016630: protochlorophyllide reductase activity	5.74E-04
35	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.74E-04
36	GO:0031072: heat shock protein binding	7.57E-04
37	GO:0070402: NADPH binding	9.31E-04
38	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.31E-04
39	GO:0004180: carboxypeptidase activity	9.31E-04
40	GO:0016992: lipoate synthase activity	9.31E-04
41	GO:0003913: DNA photolyase activity	9.31E-04
42	GO:0005504: fatty acid binding	9.31E-04
43	GO:0004148: dihydrolipoyl dehydrogenase activity	9.31E-04
44	GO:0004075: biotin carboxylase activity	9.31E-04
45	GO:0004751: ribose-5-phosphate isomerase activity	9.31E-04
46	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.31E-04
47	GO:0016805: dipeptidase activity	9.31E-04
48	GO:0005528: FK506 binding	1.17E-03
49	GO:0043023: ribosomal large subunit binding	1.33E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.33E-03
51	GO:0016149: translation release factor activity, codon specific	1.33E-03
52	GO:0016851: magnesium chelatase activity	1.33E-03
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.51E-03
54	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.78E-03
55	GO:0043495: protein anchor	1.78E-03
56	GO:0047134: protein-disulfide reductase activity	1.97E-03
57	GO:0004812: aminoacyl-tRNA ligase activity	1.97E-03
58	GO:0003989: acetyl-CoA carboxylase activity	2.27E-03
59	GO:0016846: carbon-sulfur lyase activity	2.27E-03
60	GO:0003959: NADPH dehydrogenase activity	2.27E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.27E-03
62	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-03
63	GO:2001070: starch binding	2.80E-03
64	GO:0004526: ribonuclease P activity	2.80E-03
65	GO:0016208: AMP binding	2.80E-03
66	GO:0051082: unfolded protein binding	2.83E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.22E-03
68	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.36E-03
69	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.36E-03
70	GO:0019843: rRNA binding	3.77E-03
71	GO:0019899: enzyme binding	3.97E-03
72	GO:0030170: pyridoxal phosphate binding	4.31E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	4.60E-03
74	GO:0046914: transition metal ion binding	5.27E-03
75	GO:0003747: translation release factor activity	5.98E-03
76	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.98E-03
77	GO:0015020: glucuronosyltransferase activity	7.47E-03
78	GO:0051539: 4 iron, 4 sulfur cluster binding	7.69E-03
79	GO:0042802: identical protein binding	7.71E-03
80	GO:0008559: xenobiotic-transporting ATPase activity	8.27E-03
81	GO:0000049: tRNA binding	9.09E-03
82	GO:0035091: phosphatidylinositol binding	9.42E-03
83	GO:0004089: carbonate dehydratase activity	9.94E-03
84	GO:0005262: calcium channel activity	9.94E-03
85	GO:0051087: chaperone binding	1.46E-02
86	GO:0043424: protein histidine kinase binding	1.46E-02
87	GO:0004176: ATP-dependent peptidase activity	1.56E-02
88	GO:0046872: metal ion binding	1.70E-02
89	GO:0015035: protein disulfide oxidoreductase activity	1.73E-02
90	GO:0022891: substrate-specific transmembrane transporter activity	1.77E-02
91	GO:0008810: cellulase activity	1.77E-02
92	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.16E-02
93	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.22E-02
94	GO:0016853: isomerase activity	2.34E-02
95	GO:0008565: protein transporter activity	2.52E-02
96	GO:0008483: transaminase activity	3.09E-02
97	GO:0008237: metallopeptidase activity	3.09E-02
98	GO:0005509: calcium ion binding	3.13E-02
99	GO:0016413: O-acetyltransferase activity	3.22E-02
100	GO:0003743: translation initiation factor activity	3.39E-02
101	GO:0016168: chlorophyll binding	3.49E-02
102	GO:0003723: RNA binding	3.55E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.63E-02
104	GO:0004721: phosphoprotein phosphatase activity	3.77E-02
105	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.05E-02
106	GO:0016787: hydrolase activity	4.08E-02
107	GO:0015238: drug transmembrane transporter activity	4.20E-02
108	GO:0030145: manganese ion binding	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.68E-43
3	GO:0009570: chloroplast stroma	3.40E-29
4	GO:0009941: chloroplast envelope	6.48E-15
5	GO:0009535: chloroplast thylakoid membrane	5.13E-12
6	GO:0009534: chloroplast thylakoid	6.14E-11
7	GO:0009579: thylakoid	1.08E-07
8	GO:0009543: chloroplast thylakoid lumen	4.91E-07
9	GO:0009508: plastid chromosome	8.77E-07
10	GO:0031969: chloroplast membrane	1.14E-06
11	GO:0009295: nucleoid	1.22E-06
12	GO:0009654: photosystem II oxygen evolving complex	9.40E-05
13	GO:0031977: thylakoid lumen	1.37E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	2.60E-04
15	GO:0009547: plastid ribosome	2.60E-04
16	GO:0019898: extrinsic component of membrane	2.70E-04
17	GO:0010319: stromule	4.15E-04
18	GO:0009536: plastid	4.71E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.74E-04
20	GO:0030095: chloroplast photosystem II	8.52E-04
21	GO:0009528: plastid inner membrane	9.31E-04
22	GO:0010007: magnesium chelatase complex	9.31E-04
23	GO:0033281: TAT protein transport complex	9.31E-04
24	GO:0042651: thylakoid membrane	1.28E-03
25	GO:0005960: glycine cleavage complex	1.33E-03
26	GO:0009532: plastid stroma	1.41E-03
27	GO:0009527: plastid outer membrane	1.78E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.80E-03
29	GO:0009533: chloroplast stromal thylakoid	3.97E-03
30	GO:0030529: intracellular ribonucleoprotein complex	4.08E-03
31	GO:0012507: ER to Golgi transport vesicle membrane	4.60E-03
32	GO:0009707: chloroplast outer membrane	5.32E-03
33	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.98E-03
34	GO:0000311: plastid large ribosomal subunit	9.09E-03
35	GO:0043234: protein complex	1.27E-02
36	GO:0009523: photosystem II	2.46E-02
37	GO:0005778: peroxisomal membrane	3.09E-02
38	GO:0046658: anchored component of plasma membrane	3.84E-02
39	GO:0000325: plant-type vacuole	4.49E-02