Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0032502: developmental process1.73E-05
9GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.27E-05
10GO:0009228: thiamine biosynthetic process9.62E-05
11GO:1901259: chloroplast rRNA processing1.32E-04
12GO:0010189: vitamin E biosynthetic process1.32E-04
13GO:0052543: callose deposition in cell wall2.22E-04
14GO:0019252: starch biosynthetic process2.38E-04
15GO:0000476: maturation of 4.5S rRNA2.43E-04
16GO:0009443: pyridoxal 5'-phosphate salvage2.43E-04
17GO:0000967: rRNA 5'-end processing2.43E-04
18GO:0080112: seed growth2.43E-04
19GO:1905039: carboxylic acid transmembrane transport2.43E-04
20GO:1905200: gibberellic acid transmembrane transport2.43E-04
21GO:0046467: membrane lipid biosynthetic process2.43E-04
22GO:0043953: protein transport by the Tat complex2.43E-04
23GO:0051775: response to redox state2.43E-04
24GO:0006659: phosphatidylserine biosynthetic process2.43E-04
25GO:0065002: intracellular protein transmembrane transport2.43E-04
26GO:0071461: cellular response to redox state2.43E-04
27GO:0071482: cellular response to light stimulus2.74E-04
28GO:0005982: starch metabolic process3.94E-04
29GO:0015995: chlorophyll biosynthetic process5.26E-04
30GO:0019684: photosynthesis, light reaction5.33E-04
31GO:0051645: Golgi localization5.39E-04
32GO:0080005: photosystem stoichiometry adjustment5.39E-04
33GO:1902326: positive regulation of chlorophyll biosynthetic process5.39E-04
34GO:0034755: iron ion transmembrane transport5.39E-04
35GO:0060151: peroxisome localization5.39E-04
36GO:0071457: cellular response to ozone5.39E-04
37GO:1904143: positive regulation of carotenoid biosynthetic process5.39E-04
38GO:0034470: ncRNA processing5.39E-04
39GO:0006810: transport5.77E-04
40GO:0009767: photosynthetic electron transport chain6.91E-04
41GO:0055114: oxidation-reduction process7.44E-04
42GO:0048467: gynoecium development7.77E-04
43GO:0010020: chloroplast fission7.77E-04
44GO:0006954: inflammatory response8.75E-04
45GO:0051646: mitochondrion localization8.75E-04
46GO:0090436: leaf pavement cell development8.75E-04
47GO:0005977: glycogen metabolic process8.75E-04
48GO:0046653: tetrahydrofolate metabolic process1.25E-03
49GO:0006107: oxaloacetate metabolic process1.25E-03
50GO:0009052: pentose-phosphate shunt, non-oxidative branch1.25E-03
51GO:0009226: nucleotide-sugar biosynthetic process1.25E-03
52GO:0006168: adenine salvage1.25E-03
53GO:2001141: regulation of RNA biosynthetic process1.25E-03
54GO:0006166: purine ribonucleoside salvage1.25E-03
55GO:0071484: cellular response to light intensity1.25E-03
56GO:0009152: purine ribonucleotide biosynthetic process1.25E-03
57GO:0009765: photosynthesis, light harvesting1.67E-03
58GO:0006109: regulation of carbohydrate metabolic process1.67E-03
59GO:0010107: potassium ion import1.67E-03
60GO:0006546: glycine catabolic process1.67E-03
61GO:0006021: inositol biosynthetic process1.67E-03
62GO:0006734: NADH metabolic process1.67E-03
63GO:0010021: amylopectin biosynthetic process1.67E-03
64GO:0071486: cellular response to high light intensity1.67E-03
65GO:0009658: chloroplast organization1.78E-03
66GO:0006465: signal peptide processing2.13E-03
67GO:0071493: cellular response to UV-B2.13E-03
68GO:0098719: sodium ion import across plasma membrane2.13E-03
69GO:0006564: L-serine biosynthetic process2.13E-03
70GO:0010236: plastoquinone biosynthetic process2.13E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.13E-03
72GO:0000278: mitotic cell cycle2.13E-03
73GO:0044209: AMP salvage2.13E-03
74GO:0009791: post-embryonic development2.40E-03
75GO:0008654: phospholipid biosynthetic process2.40E-03
76GO:0050665: hydrogen peroxide biosynthetic process2.62E-03
77GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.62E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.62E-03
79GO:0015979: photosynthesis3.02E-03
80GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.15E-03
81GO:0009854: oxidative photosynthetic carbon pathway3.15E-03
82GO:0009955: adaxial/abaxial pattern specification3.15E-03
83GO:0071333: cellular response to glucose stimulus3.15E-03
84GO:0010027: thylakoid membrane organization3.71E-03
85GO:1900056: negative regulation of leaf senescence3.72E-03
86GO:0009769: photosynthesis, light harvesting in photosystem II3.72E-03
87GO:0009645: response to low light intensity stimulus3.72E-03
88GO:0042255: ribosome assembly4.31E-03
89GO:0009690: cytokinin metabolic process4.31E-03
90GO:0006353: DNA-templated transcription, termination4.31E-03
91GO:0010078: maintenance of root meristem identity4.31E-03
92GO:0055075: potassium ion homeostasis4.31E-03
93GO:0016559: peroxisome fission4.31E-03
94GO:0048564: photosystem I assembly4.31E-03
95GO:0019430: removal of superoxide radicals4.93E-03
96GO:0009657: plastid organization4.93E-03
97GO:0010204: defense response signaling pathway, resistance gene-independent4.93E-03
98GO:0032544: plastid translation4.93E-03
99GO:0043562: cellular response to nitrogen levels4.93E-03
100GO:0017004: cytochrome complex assembly4.93E-03
101GO:0009821: alkaloid biosynthetic process5.59E-03
102GO:0006098: pentose-phosphate shunt5.59E-03
103GO:0090333: regulation of stomatal closure5.59E-03
104GO:0006779: porphyrin-containing compound biosynthetic process6.27E-03
105GO:0010380: regulation of chlorophyll biosynthetic process6.27E-03
106GO:0007346: regulation of mitotic cell cycle6.27E-03
107GO:0051453: regulation of intracellular pH6.27E-03
108GO:0034599: cellular response to oxidative stress6.41E-03
109GO:0006782: protoporphyrinogen IX biosynthetic process6.99E-03
110GO:0009089: lysine biosynthetic process via diaminopimelate7.73E-03
111GO:0043085: positive regulation of catalytic activity7.73E-03
112GO:0015770: sucrose transport7.73E-03
113GO:0006879: cellular iron ion homeostasis7.73E-03
114GO:0006352: DNA-templated transcription, initiation7.73E-03
115GO:0018119: peptidyl-cysteine S-nitrosylation7.73E-03
116GO:0009684: indoleacetic acid biosynthetic process7.73E-03
117GO:0010114: response to red light7.90E-03
118GO:0016024: CDP-diacylglycerol biosynthetic process8.49E-03
119GO:0009644: response to high light intensity8.55E-03
120GO:0010588: cotyledon vascular tissue pattern formation9.29E-03
121GO:0030048: actin filament-based movement9.29E-03
122GO:0006108: malate metabolic process9.29E-03
123GO:0006094: gluconeogenesis9.29E-03
124GO:0010143: cutin biosynthetic process1.01E-02
125GO:0010207: photosystem II assembly1.01E-02
126GO:0009901: anther dehiscence1.10E-02
127GO:0019853: L-ascorbic acid biosynthetic process1.10E-02
128GO:0042023: DNA endoreduplication1.18E-02
129GO:0009768: photosynthesis, light harvesting in photosystem I1.37E-02
130GO:0019915: lipid storage1.46E-02
131GO:0009269: response to desiccation1.46E-02
132GO:0016114: terpenoid biosynthetic process1.46E-02
133GO:0019748: secondary metabolic process1.56E-02
134GO:0071215: cellular response to abscisic acid stimulus1.66E-02
135GO:0009686: gibberellin biosynthetic process1.66E-02
136GO:0006012: galactose metabolic process1.66E-02
137GO:0016117: carotenoid biosynthetic process1.86E-02
138GO:0080022: primary root development1.97E-02
139GO:0010087: phloem or xylem histogenesis1.97E-02
140GO:0009058: biosynthetic process2.01E-02
141GO:0009958: positive gravitropism2.07E-02
142GO:0006885: regulation of pH2.07E-02
143GO:0006520: cellular amino acid metabolic process2.07E-02
144GO:0071472: cellular response to salt stress2.07E-02
145GO:0010154: fruit development2.07E-02
146GO:0006662: glycerol ether metabolic process2.07E-02
147GO:0009741: response to brassinosteroid2.07E-02
148GO:0010268: brassinosteroid homeostasis2.07E-02
149GO:0006814: sodium ion transport2.18E-02
150GO:0009646: response to absence of light2.18E-02
151GO:0048825: cotyledon development2.29E-02
152GO:0009851: auxin biosynthetic process2.29E-02
153GO:0016132: brassinosteroid biosynthetic process2.41E-02
154GO:0010090: trichome morphogenesis2.64E-02
155GO:1901657: glycosyl compound metabolic process2.64E-02
156GO:0016125: sterol metabolic process2.76E-02
157GO:0009567: double fertilization forming a zygote and endosperm2.76E-02
158GO:0008380: RNA splicing3.15E-02
159GO:0006974: cellular response to DNA damage stimulus3.39E-02
160GO:0009735: response to cytokinin3.46E-02
161GO:0016311: dephosphorylation3.65E-02
162GO:0016049: cell growth3.65E-02
163GO:0009817: defense response to fungus, incompatible interaction3.78E-02
164GO:0018298: protein-chromophore linkage3.78E-02
165GO:0009416: response to light stimulus3.87E-02
166GO:0010218: response to far red light4.05E-02
167GO:0048527: lateral root development4.19E-02
168GO:0009910: negative regulation of flower development4.19E-02
169GO:0051301: cell division4.30E-02
170GO:0009853: photorespiration4.48E-02
171GO:0009637: response to blue light4.48E-02
172GO:0006099: tricarboxylic acid cycle4.62E-02
173GO:0009409: response to cold4.73E-02
174GO:0006839: mitochondrial transport4.91E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0010276: phytol kinase activity0.00E+00
7GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
8GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
9GO:0009011: starch synthase activity2.46E-07
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.12E-05
11GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.32E-04
12GO:0004033: aldo-keto reductase (NADP) activity2.22E-04
13GO:1905201: gibberellin transmembrane transporter activity2.43E-04
14GO:0051777: ent-kaurenoate oxidase activity2.43E-04
15GO:0005080: protein kinase C binding2.43E-04
16GO:0008746: NAD(P)+ transhydrogenase activity2.43E-04
17GO:0004328: formamidase activity2.43E-04
18GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.43E-04
19GO:0004312: fatty acid synthase activity5.39E-04
20GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.39E-04
21GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.39E-04
22GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity5.39E-04
23GO:0019156: isoamylase activity5.39E-04
24GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.39E-04
25GO:0004512: inositol-3-phosphate synthase activity5.39E-04
26GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.39E-04
27GO:0009977: proton motive force dependent protein transmembrane transporter activity5.39E-04
28GO:0004617: phosphoglycerate dehydrogenase activity5.39E-04
29GO:0004047: aminomethyltransferase activity5.39E-04
30GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity5.39E-04
31GO:0033201: alpha-1,4-glucan synthase activity5.39E-04
32GO:0004373: glycogen (starch) synthase activity8.75E-04
33GO:0004751: ribose-5-phosphate isomerase activity8.75E-04
34GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.75E-04
35GO:0070402: NADPH binding8.75E-04
36GO:0008864: formyltetrahydrofolate deformylase activity8.75E-04
37GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.75E-04
38GO:0003999: adenine phosphoribosyltransferase activity1.25E-03
39GO:0003883: CTP synthase activity1.25E-03
40GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.25E-03
41GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.25E-03
42GO:0016851: magnesium chelatase activity1.25E-03
43GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.25E-03
44GO:0001872: (1->3)-beta-D-glucan binding1.25E-03
45GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.25E-03
46GO:0042802: identical protein binding1.32E-03
47GO:0016491: oxidoreductase activity1.49E-03
48GO:0003727: single-stranded RNA binding1.66E-03
49GO:0004045: aminoacyl-tRNA hydrolase activity1.67E-03
50GO:0016987: sigma factor activity1.67E-03
51GO:0008891: glycolate oxidase activity1.67E-03
52GO:0001053: plastid sigma factor activity1.67E-03
53GO:0016846: carbon-sulfur lyase activity2.13E-03
54GO:0048038: quinone binding2.57E-03
55GO:0004556: alpha-amylase activity2.62E-03
56GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.62E-03
57GO:0004784: superoxide dismutase activity2.62E-03
58GO:0015081: sodium ion transmembrane transporter activity2.62E-03
59GO:0016615: malate dehydrogenase activity2.62E-03
60GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.62E-03
61GO:0008200: ion channel inhibitor activity2.62E-03
62GO:2001070: starch binding2.62E-03
63GO:0004605: phosphatidate cytidylyltransferase activity2.62E-03
64GO:0004332: fructose-bisphosphate aldolase activity2.62E-03
65GO:0030060: L-malate dehydrogenase activity3.15E-03
66GO:0008195: phosphatidate phosphatase activity3.15E-03
67GO:0019843: rRNA binding3.34E-03
68GO:0005381: iron ion transmembrane transporter activity6.27E-03
69GO:0016844: strictosidine synthase activity6.27E-03
70GO:0003993: acid phosphatase activity6.41E-03
71GO:0004712: protein serine/threonine/tyrosine kinase activity6.69E-03
72GO:0008047: enzyme activator activity6.99E-03
73GO:0008515: sucrose transmembrane transporter activity7.73E-03
74GO:0015386: potassium:proton antiporter activity7.73E-03
75GO:0008559: xenobiotic-transporting ATPase activity7.73E-03
76GO:0047372: acylglycerol lipase activity7.73E-03
77GO:0004185: serine-type carboxypeptidase activity7.90E-03
78GO:0008378: galactosyltransferase activity8.49E-03
79GO:0016788: hydrolase activity, acting on ester bonds8.98E-03
80GO:0003725: double-stranded RNA binding9.29E-03
81GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.01E-02
82GO:0003774: motor activity1.01E-02
83GO:0051119: sugar transmembrane transporter activity1.10E-02
84GO:0005215: transporter activity1.14E-02
85GO:0031409: pigment binding1.18E-02
86GO:0043130: ubiquitin binding1.27E-02
87GO:0005528: FK506 binding1.27E-02
88GO:0004857: enzyme inhibitor activity1.27E-02
89GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.30E-02
90GO:0004176: ATP-dependent peptidase activity1.46E-02
91GO:0030570: pectate lyase activity1.66E-02
92GO:0047134: protein-disulfide reductase activity1.86E-02
93GO:0010181: FMN binding2.18E-02
94GO:0004791: thioredoxin-disulfide reductase activity2.18E-02
95GO:0019901: protein kinase binding2.29E-02
96GO:0015385: sodium:proton antiporter activity2.64E-02
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.64E-02
98GO:0016791: phosphatase activity2.76E-02
99GO:0008483: transaminase activity2.88E-02
100GO:0016722: oxidoreductase activity, oxidizing metal ions2.88E-02
101GO:0008237: metallopeptidase activity2.88E-02
102GO:0016597: amino acid binding3.01E-02
103GO:0016168: chlorophyll binding3.26E-02
104GO:0016887: ATPase activity3.27E-02
105GO:0102483: scopolin beta-glucosidase activity3.52E-02
106GO:0004721: phosphoprotein phosphatase activity3.52E-02
107GO:0030247: polysaccharide binding3.52E-02
108GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.65E-02
109GO:0008168: methyltransferase activity3.92E-02
110GO:0015238: drug transmembrane transporter activity3.92E-02
111GO:0004222: metalloendopeptidase activity4.05E-02
112GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.05E-02
113GO:0004601: peroxidase activity4.07E-02
114GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.19E-02
115GO:0003746: translation elongation factor activity4.48E-02
116GO:0008422: beta-glucosidase activity4.76E-02
117GO:0042393: histone binding4.91E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast2.57E-23
4GO:0009570: chloroplast stroma7.87E-14
5GO:0009941: chloroplast envelope1.32E-10
6GO:0009535: chloroplast thylakoid membrane2.26E-10
7GO:0009543: chloroplast thylakoid lumen3.52E-07
8GO:0009579: thylakoid6.99E-07
9GO:0009654: photosystem II oxygen evolving complex2.58E-06
10GO:0030095: chloroplast photosystem II4.16E-05
11GO:0009534: chloroplast thylakoid4.71E-05
12GO:0031977: thylakoid lumen1.16E-04
13GO:0019898: extrinsic component of membrane2.38E-04
14GO:0005787: signal peptidase complex2.43E-04
15GO:0031361: integral component of thylakoid membrane2.43E-04
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.32E-04
17GO:0009295: nucleoid3.66E-04
18GO:0043036: starch grain5.39E-04
19GO:0080085: signal recognition particle, chloroplast targeting5.39E-04
20GO:0009508: plastid chromosome6.91E-04
21GO:0033281: TAT protein transport complex8.75E-04
22GO:0010007: magnesium chelatase complex8.75E-04
23GO:0030658: transport vesicle membrane1.25E-03
24GO:0009517: PSII associated light-harvesting complex II1.67E-03
25GO:0009522: photosystem I2.24E-03
26GO:0031969: chloroplast membrane2.47E-03
27GO:0010287: plastoglobule3.12E-03
28GO:0010319: stromule3.31E-03
29GO:0009501: amyloplast4.31E-03
30GO:0009539: photosystem II reaction center4.93E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.93E-03
32GO:0000307: cyclin-dependent protein kinase holoenzyme complex4.93E-03
33GO:0048046: apoplast5.01E-03
34GO:0005763: mitochondrial small ribosomal subunit5.59E-03
35GO:0016020: membrane6.69E-03
36GO:0016459: myosin complex6.99E-03
37GO:0030076: light-harvesting complex1.10E-02
38GO:0005773: vacuole1.21E-02
39GO:0005623: cell1.96E-02
40GO:0009523: photosystem II2.29E-02
41GO:0030529: intracellular ribonucleoprotein complex3.13E-02
42GO:0046658: anchored component of plasma membrane3.49E-02
43GO:0005886: plasma membrane3.52E-02
44GO:0009707: chloroplast outer membrane3.78E-02
45GO:0019005: SCF ubiquitin ligase complex3.78E-02
46GO:0000325: plant-type vacuole4.19E-02
47GO:0005777: peroxisome4.58E-02
<
Gene type



Gene DE type